Multiplex matrix network analysis of protein complexes in the human TCR signalosome
暂无分享,去创建一个
Claudia Neuhauser | Jeanette E. Eckel-Passow | Jason P. Sinnwell | C. Neuhauser | J. Eckel-Passow | J. Sinnwell | Diana Gil | A. Schrum | Stephen E P Smith | Stephen E. P. Smith | Steven C. Neier | Brendan K. Reed | Tessa R. Davis | Gabriel F. Sciallis | Carilyn N. Wieland | Rochelle R. Torgerson | Diana Gil | Adam G. Schrum | R. Torgerson | C. Wieland | Steven C Neier | T. Davis | G. Sciallis | Brendan Reed
[1] A. Schrum. Visualization of Multiprotein Complexes by Flow Cytometry , 2009, Current protocols in immunology.
[2] S. Raychaudhuri,et al. Immune cell profiling to guide therapeutic decisions in rheumatic diseases , 2015, Nature Reviews Rheumatology.
[3] Diana Gil,et al. Robustness and Specificity in Signal Transduction via Physiologic Protein Interaction Networks , 2012, Clinical & experimental pharmacology.
[4] R. Clark,et al. A novel method for the isolation of skin resident T cells from normal and diseased human skin. , 2006, The Journal of investigative dermatology.
[5] Hon Wai Leong,et al. A survey of computational methods for protein complex prediction from protein interaction networks , 2012, J. Bioinform. Comput. Biol..
[6] P. Allen,et al. How the TCR balances sensitivity and specificity for the recognition of self and pathogens , 2012, Nature Immunology.
[7] T. Pawson,et al. Efficient T‐cell receptor signaling requires a high‐affinity interaction between the Gads C‐SH3 domain and the SLP‐76 RxxK motif , 2007, The EMBO journal.
[8] S. L. Wong,et al. Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.
[9] T. Pawson. ReviewSpecificity in Signal Transduction : From Phosphotyrosine-SH 2 Domain Interactions to Complex Cellular Systems , 2004 .
[10] E. Palmer,et al. High-Sensitivity Detection and Quantitative Analysis of Native Protein-Protein Interactions and Multiprotein Complexes by Flow Cytometry , 2007, Science's STKE.
[11] Benjamin A. Shoemaker,et al. Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners , 2007, PLoS Comput. Biol..
[12] Tony Pawson,et al. Specificity in Signal Transduction From Phosphotyrosine-SH2 Domain Interactions to Complex Cellular Systems , 2004, Cell.
[13] Lennart Martens,et al. Annotating the human proteome: beyond establishing a parts list. , 2007, Biochimica et biophysica acta.
[14] A. Weiss,et al. Jurkat T cells and development of the T-cell receptor signalling paradigm , 2004, Nature Reviews Immunology.
[15] B. Kholodenko,et al. Computational Approaches for Analyzing Information Flow in Biological Networks , 2012, Science Signaling.
[16] Barbara Hausmann,et al. A motif in the αβ T-cell receptor controls positive selection by modulating ERK activity , 2000, Nature.
[17] K. Takase,et al. [T cell activation]. , 1995, Ryumachi. [Rheumatism].
[18] J Douglas Armstrong,et al. Reconstructing protein complexes: From proteomics to systems biology , 2006, Proteomics.
[19] Jianmin Wu,et al. PINA v2.0: mining interactome modules , 2011, Nucleic Acids Res..
[20] M. Pittelkow,et al. Signalling protein complexes isolated from primary human skin‐resident T cells can be analysed by Multiplex IP‐FCM , 2014, Experimental dermatology.
[21] A. Weiss,et al. Signal transduction by the TCR for antigen. , 2000, Current opinion in immunology.
[22] Jason A. Papin,et al. Reconstruction of cellular signalling networks and analysis of their properties , 2005, Nature Reviews Molecular Cell Biology.
[23] Tony Pawson,et al. Modular evolution of phosphorylation-based signalling systems , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.
[24] Michiko Kato,et al. Systems for the detection and analysis of protein–protein interactions , 2006, Applied Microbiology and Biotechnology.
[25] F. Avilés,et al. Detecting and interfering protein interactions: towards the control of biochemical pathways. , 2009, Current medicinal chemistry.
[26] G. von Heijne,et al. Tissue-based map of the human proteome , 2015, Science.
[27] Steve Horvath,et al. WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.
[28] Xiufen Zou,et al. A theoretical framework for specificity in cell signaling , 2005, Molecular systems biology.
[29] P. Linsley,et al. Binding of the B cell activation antigen B7 to CD28 costimulates T cell proliferation and interleukin 2 mRNA accumulation , 1991, The Journal of experimental medicine.
[30] Diana Gil,et al. Multiplex IP-FCM (immunoprecipitation-flow cytometry): Principles and guidelines for assessing physiologic protein-protein interactions in multiprotein complexes. , 2012, Methods.
[31] Ursula Pieper,et al. Protein complex compositions predicted by structural similarity , 2006, Nucleic acids research.
[32] Jonathan M. Green,et al. An enigmatic tail of CD28 signaling. , 2010, Cold Spring Harbor perspectives in biology.
[33] Rainer Breitling,et al. What is Systems Biology? , 2010, Front. Physiology.
[34] M. Hayden,et al. Ultrasensitive measurement of huntingtin protein in cerebrospinal fluid demonstrates increase with Huntington disease stage and decrease following brain huntingtin suppression , 2015, Scientific Reports.
[35] Tony Pawson,et al. Dynamic control of signaling by modular adaptor proteins. , 2007, Current opinion in cell biology.
[36] Peter Langfelder,et al. Fast R Functions for Robust Correlations and Hierarchical Clustering. , 2012, Journal of statistical software.
[37] H. Lähdesmäki,et al. Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor–independent TCR signaling hub , 2014, Nature Immunology.
[38] William J. R. Longabaugh,et al. Combing the hairball with BioFabric: a new approach for visualization of large networks , 2012, BMC Bioinformatics.
[39] Annette Lee,et al. Genome-wide association study in alopecia areata implicates both innate and adaptive immunity , 2010, Nature.
[40] D. Vignali,et al. Organization of proximal signal initiation at the TCR:CD3 complex , 2009, Immunological reviews.
[41] M. Tyers,et al. From genomics to proteomics , 2003, Nature.
[42] A. Barabasi,et al. Uncovering disease-disease relationships through the incomplete interactome , 2015, Science.
[43] Ronald N Germain,et al. Modeling T Cell Antigen Discrimination Based on Feedback Control of Digital ERK Responses , 2005, PLoS biology.
[44] Mark M. Davis,et al. Significance analysis of xMap cytokine bead arrays , 2012, Proceedings of the National Academy of Sciences.