STAT1-cooperative DNA binding distinguishes type 1 from type 2 interferon signaling

STAT1 is an indispensable component of a heterotrimer (ISGF3) and a STAT1 homodimer (GAF) that function as transcription regulators in type 1 and type 2 interferon signaling, respectively. To investigate the importance of STAT1-cooperative DNA binding, we generated gene-targeted mice expressing cooperativity-deficient STAT1 with alanine substituted for Phe77. Neither ISGF3 nor GAF bound DNA cooperatively in the STAT1F77A mouse strain, but type 1 and type 2 interferon responses were affected differently. Type 2 interferon–mediated transcription and antibacterial immunity essentially disappeared owing to defective promoter recruitment of GAF. In contrast, STAT1 recruitment to ISGF3 binding sites and type 1 interferon–dependent responses, including antiviral protection, remained intact. We conclude that STAT1 cooperativity is essential for its biological activity and underlies the cellular responses to type 2, but not type 1 interferon.

[1]  R. Zimmer,et al.  High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. , 2008, RNA.

[2]  Guido Tiana,et al.  Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs. , 2010, Molecular cell.

[3]  Andreas Marg,et al.  DNA binding controls inactivation and nuclear accumulation of the transcription factor Stat1. , 2003, Genes & development.

[4]  E. Furlong,et al.  Transcription factors: from enhancer binding to developmental control , 2012, Nature Reviews Genetics.

[5]  Philipp Bucher,et al.  MER41 Repeat Sequences Contain Inducible STAT1 Binding Sites , 2010, PloS one.

[6]  U. Vinkemeier,et al.  Activated STAT1 transcription factors conduct distinct saltatory movements in the cell nucleus. , 2011, Biophysical journal.

[7]  J. Darnell,et al.  Tyrosine-phosphorylated Stat1 and Stat2 plus a 48-kDa protein all contact DNA in forming interferon-stimulated-gene factor 3. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[8]  M Aguet,et al.  Functional role of type I and type II interferons in antiviral defense. , 1994, Science.

[9]  E. Yang,et al.  Recruitment of Stat1 to chromatin is required for interferon-induced serine phosphorylation of Stat1 transactivation domain , 2008, Proceedings of the National Academy of Sciences.

[10]  D. Levy,et al.  Targeted Disruption of the Mouse Stat1 Gene Results in Compromised Innate Immunity to Viral Disease , 1996, Cell.

[11]  Eran Segal,et al.  From DNA sequence to transcriptional behaviour: a quantitative approach , 2009, Nature Reviews Genetics.

[12]  Andreas Marg,et al.  STAT1 Signaling Is Not Regulated by a Phosphorylation-Acetylation Switch , 2011, Molecular and Cellular Biology.

[13]  I. Bechmann,et al.  Local Type I IFN Receptor Signaling Protects against Virus Spread within the Central Nervous System1 , 2009, The Journal of Immunology.

[14]  Mary Goldman,et al.  The UCSC Genome Browser database: extensions and updates 2011 , 2011, Nucleic Acids Res..

[15]  Mary Goldman,et al.  The UCSC Genome Browser database: extensions and updates 2013 , 2012, Nucleic Acids Res..

[16]  G. Stark,et al.  How cells respond to interferons. , 1998, Annual review of biochemistry.

[17]  John Kuriyan,et al.  A reinterpretation of the dimerization interface of the N‐terminal Domains of STATs , 2003, Protein science : a publication of the Protein Society.

[18]  J. Darnell,et al.  Structural bases of unphosphorylated STAT1 association and receptor binding. , 2005, Molecular cell.

[19]  D. Levy,et al.  Central role for type I interferons and Tyk2 in lipopolysaccharide-induced endotoxin shock , 2003, Nature Immunology.

[20]  U. Vinkemeier,et al.  Green fluorescent protein‐tagging reduces the nucleocytoplasmic shuttling specifically of unphosphorylated STAT1 , 2007, The FEBS journal.

[21]  G. Stark,et al.  Cooperative binding of Stat1-2 heterodimers and ISGF3 to tandem DNA elements. , 1998, Biochimie.

[22]  U. Vinkemeier,et al.  Evidence against a Role for β-Arrestin1 in STAT1 Dephosphorylation and the Inhibition of Interferon-γ Signaling , 2013, Molecular cell.

[23]  D. Levy,et al.  Interferon-alpha regulates nuclear translocation and DNA-binding affinity of ISGF3, a multimeric transcriptional activator. , 1990, Genes & development.

[24]  G. Stark,et al.  Alternative Activation of STAT 1 and STAT 3 in Response to Interferon-* , 2004 .

[25]  R. Schreiber,et al.  Requirement of endogenous interferon-gamma production for resolution of Listeria monocytogenes infection. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[26]  D. Levy,et al.  Stat2 Is a Transcriptional Activator That Requires Sequence-specific Contacts Provided by Stat1 and p48 for Stable Interaction with DNA* , 1997, The Journal of Biological Chemistry.

[27]  C. Rice,et al.  IFNβ-dependent increases in STAT1, STAT2, and IRF9 mediate resistance to viruses and DNA damage , 2013, The EMBO journal.

[28]  J. Darnell,et al.  Implications of an antiparallel dimeric structure of nonphosphorylated STAT1 for the activation-inactivation cycle. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[29]  T. Decker,et al.  Stimulation of Inducible Nitric Oxide Synthase Expression by Beta Interferon Increases Necrotic Death of Macrophages upon Listeria monocytogenes Infection , 2008, Infection and Immunity.

[30]  Chilakamarti V. Ramana,et al.  Stat1-dependent and -independent pathways in IFN-γ-dependent signaling , 2002 .

[31]  Norbert O. Reich,et al.  STAT1:DNA sequence-dependent binding modulation by phosphorylation, protein:protein interactions and small-molecule inhibition , 2012, Nucleic acids research.

[32]  L. Platanias Mechanisms of type-I- and type-II-interferon-mediated signalling , 2005, Nature Reviews Immunology.

[33]  Xiaoyu Hu,et al.  Sensitization of IFN-γ Jak-STAT signaling during macrophage activation , 2002, Nature Immunology.

[34]  D. Levy,et al.  Production of Type I IFN Sensitizes Macrophages to Cell Death Induced by Listeria monocytogenes1 , 2002, The Journal of Immunology.

[35]  Mark Ptashne,et al.  A Genetic Switch, Phage Lambda Revisited , 2004 .

[36]  T. Hoey,et al.  Cooperative DNA Binding and Sequence-Selective Recognition Conferred by the STAT Amino-Terminal Domain , 1996, Science.

[37]  K. Knobeloch,et al.  SUMO conjugation of STAT1 protects cells from hyperresponsiveness to IFNγ. , 2011, Blood.

[38]  J. Casanova,et al.  Inborn errors of human STAT1: allelic heterogeneity governs the diversity of immunological and infectious phenotypes , 2012, Current Opinion in Immunology.

[39]  J. Darnell,et al.  The JAK-STAT pathway at twenty. , 2012, Immunity.

[40]  U. Vinkemeier,et al.  Tyrosine phosphorylation regulates the partitioning of STAT1 between different dimer conformations , 2008, Proceedings of the National Academy of Sciences.

[41]  Terence P Speed,et al.  Proximal genomic localization of STAT1 binding and regulated transcriptional activity , 2006, BMC Genomics.

[42]  Lionel B Ivashkiv,et al.  Sensitization of IFN-gamma Jak-STAT signaling during macrophage activation. , 2002, Nature immunology.

[43]  U. Vinkemeier,et al.  Getting the message across, STAT! Design principles of a molecular signaling circuit , 2004, The Journal of cell biology.

[44]  J. Darnell,et al.  Structure of the amino-terminal protein interaction domain of STAT-4. , 1998, Science.

[45]  B. Chait,et al.  DNA binding of in vitro activated Stat1 alpha, Stat1 beta and truncated Stat1: interaction between NH2‐terminal domains stabilizes binding of two dimers to tandem DNA sites. , 1996, The EMBO journal.

[46]  R. Shackleton A Quantitative Approach , 2005 .

[47]  T. Taniguchi,et al.  Characterization of the Interferon-Producing Cell in Mice Infected with Listeria monocytogenes , 2009, PLoS pathogens.

[48]  Yulan Qing,et al.  Alternative Activation of STAT1 and STAT3 in Response to Interferon-γ* , 2004, Journal of Biological Chemistry.

[49]  John Reinitz,et al.  Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[50]  Mark Gerstein,et al.  Global changes in STAT target selection and transcription regulation upon interferon treatments. , 2005, Genes & development.

[51]  U. Vinkemeier,et al.  A Single Residue Modulates Tyrosine Dephosphorylation, Oligomerization, and Nuclear Accumulation of Stat Transcription Factors* , 2004, Journal of Biological Chemistry.

[52]  G. Stark,et al.  Stat1-dependent and -independent pathways in IFN-gamma-dependent signaling. , 2002, Trends in immunology.

[53]  A. Dinner,et al.  Epigenetic repression of the Igk locus by STAT5-mediated recruitment of the histone methyltransferase Ezh2 , 2011, Nature Immunology.

[54]  Kairong Cui,et al.  Critical Role of STAT5 transcription factor tetramerization for cytokine responses and normal immune function. , 2012, Immunity.

[55]  S. Snyder,et al.  Expression of the nitric oxide synthase gene in mouse macrophages activated for tumor cell killing. Molecular basis for the synergy between interferon-gamma and lipopolysaccharide. , 1993, The Journal of biological chemistry.