Cyclin A-CDK activity during G1 phase impairs MCM chromatin loading and inhibits DNA synthesis in mammalian cells

Progression through the mammalian cell division cycle is regulated by the sequential activation of cyclin-dependent kinases, CDKs, at specific phases of the cell cycle. Cyclin A-CDK2 and cyclin A-CDK1 phosphorylate nuclear substrates during S and G2 phases, respectfully. However, the DNA helicase complex, MCM2-7, is loaded onto the origin of replications in G1, prior to the normally scheduled induction of cyclin A. It has previously been shown that cyclin A-CDKs phosphorylate MCM2 and MCM4 in vitro, thereby diminishing helicase activity. Thus, in this study we hypothesize that, in vivo, cyclin A-CDK activity during G1 would result in an inhibition of progression into the S phase. To test this, we establish an in vivo method of inducing cyclin A-CDK activity in G1 phase and observe that activation of cyclin A-CDK, but not cyclin E-CDK complexes, inhibit DNA synthesis without affecting other G1 events such as cyclin D synthesis, E2F activation and cdc6 loading onto chromatin. We further report that the mechanism of this S phase inhibition occurs, at least in part, through impaired loading of MCM onto chromatin, presumably due to decreased levels of cdt1 and premature phosphorylation of MCM by cyclin A-CDK. In addition to providing in vivo confirmation of in vitro predictions regarding cyclin A-CDK phosphorylation of the MCM complex, our results provide insight into the cellular effects of unscheduled cyclin A-CDK activity in mammalian cells.

[1]  K. Nakayama,et al.  Two E3 ubiquitin ligases, SCF‐Skp2 and DDB1‐Cul4, target human Cdt1 for proteolysis , 2006, The EMBO journal.

[2]  A. Schulze,et al.  Cell cycle regulation of the cyclin A gene promoter is mediated by a variant E2F site. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Chaowei Wu,et al.  p42, a Novel Cyclin-dependent Kinase-activating Kinase in Mammalian Cells* , 2004, Journal of Biological Chemistry.

[4]  J. Julian Blow,et al.  Preventing re-replication of chromosomal DNA , 2005, Nature Reviews Molecular Cell Biology.

[5]  M. Kitagawa,et al.  Inhibition of Mcm4,6,7 Helicase Activity by Phosphorylation with Cyclin A/Cdk2* , 2000, The Journal of Biological Chemistry.

[6]  J. Nevins,et al.  Regulation of the cyclin E gene by transcription factor E2F1. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[7]  Nathan H. Lents,et al.  Activation and Phosphorylation on Thr‐160 of Nuclear‐Targeted CDK2 Is ERK Dependent , 2002, Annals of the New York Academy of Sciences.

[8]  Anindya Dutta,et al.  Multiple Mechanisms Regulate Subcellular Localization of Human CDC6* , 2001, The Journal of Biological Chemistry.

[9]  J. Olson,et al.  Expression of neurogenic basic helix-loop-helix genes in primitive neuroectodermal tumors. , 1997, Cancer research.

[10]  D. Cortez,et al.  DDB1 Maintains Genome Integrity through Regulation of Cdt1 , 2006, Molecular and Cellular Biology.

[11]  J. Nevins,et al.  Cellular targets for activation by the E2F1 transcription factor include DNA synthesis- and G1/S-regulatory genes , 1995, Molecular and cellular biology.

[12]  Anindya Dutta,et al.  An ATR- and BRCA1-Mediated Fanconi Anemia Pathway Is Required for Activating the G2/M Checkpoint and DNA Damage Repair upon Rereplication , 2006, Molecular and Cellular Biology.

[13]  N. Dyson,et al.  A revised picture of the E2F transcriptional network and RB function. , 2002, Current opinion in cell biology.

[14]  R. Laskey,et al.  Unphosphorylatable mutants of Cdc6 disrupt its nuclear export but still support DNA replication once per cell cycle. , 2000, Genes & development.

[15]  Robert T. Johnson,et al.  Mammalian Cell Fusion : Studies on the Regulation of DNA Synthesis and Mitosis , 1970, Nature.

[16]  Kiyoshi Ohtani,et al.  Regulation of cell growth-dependent expression of mammalian CDC6 gene by the cell cycle transcription factor E2F , 1998, Oncogene.

[17]  C. Sherr Cancer Cell Cycles , 1996, Science.

[18]  Steven K. Hanks,et al.  Identification and properties of an atypical catalytic subunit (p34PSK-J3/cdk4) for mammalian D type G1 cyclins , 1992, Cell.

[19]  N. Dyson The regulation of E2F by pRB-family proteins. , 1998, Genes & development.

[20]  J. Baldassare,et al.  α-Thrombin Induces Rapid and Sustained Akt Phosphorylation by β-Arrestin1-dependent and -independent Mechanisms, and Only the Sustained Akt Phosphorylation Is Essential for G1 Phase Progression* , 2002, The Journal of Biological Chemistry.

[21]  W. Heyer,et al.  Characterization of a cDNA encoding the 70-kDa single-stranded DNA-binding subunit of human replication protein A and the role of the protein in DNA replication. , 1991, The Journal of biological chemistry.

[22]  J. Nevins,et al.  Analysis of Cdc6 function in the assembly of mammalian prereplication complexes , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[23]  O. Olopade,et al.  Molecular analysis of deletions of the short arm of chromosome 9 in human gliomas. , 1992, Cancer research.

[24]  M. Kitagawa,et al.  The consensus motif for phosphorylation by cyclin D1‐Cdk4 is different from that for phosphorylation by cyclin A/E‐Cdk2. , 1996, The EMBO journal.

[25]  A. Pardee,et al.  Thymidine kinase transcription is regulated at G1/S phase by a complex that contains retinoblastoma-like protein and a cdc2 kinase. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[26]  S. Elsasser,et al.  Regulation of the localization and stability of Cdc6 in living yeast cells. , 2003, Biochemical and biophysical research communications.

[27]  H. Nojima,et al.  Licensing of DNA replication by a multi‐protein complex of MCM/P1 proteins in Xenopus eggs , 1997, The EMBO journal.

[28]  J. Gautier,et al.  Phosphorylation of MCM4 by cdc2 protein kinase inhibits the activity of the minichromosome maintenance complex. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Xiaohua Wu,et al.  Cyclin-dependent Kinases Phosphorylate Human Cdt1 and Induce Its Degradation* , 2004, Journal of Biological Chemistry.

[30]  David O. Morgan,et al.  A novel cyclin associates with M015/CDK7 to form the CDK-activating kinase , 1994, Cell.

[31]  D. Takeda,et al.  DNA replication and progression through S phase , 2005, Oncogene.

[32]  Charles J. Sherr,et al.  Mammalian G1 cyclins , 1993, Cell.

[33]  D. Prescott,et al.  Late S phase cells (Chinese hamster ovary) induce early S phase DNA labeling patterns in G1 phase nuclei. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[34]  Bruce Stillman,et al.  ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex , 1992, Nature.

[35]  F. McKeon,et al.  Budding yeast Cdc6p induces re-replication in fission yeast by inhibition of SCFPop-mediated proteolysis , 1999, Molecular and General Genetics MGG.

[36]  P. Farnham,et al.  A protein synthesis-dependent increase in E2F1 mRNA correlates with growth regulation of the dihydrofolate reductase promoter , 1993, Molecular and cellular biology.

[37]  James M. Roberts,et al.  Turnover of cyclin E by the ubiquitin-proteasome pathway is regulated by cdk2 binding and cyclin phosphorylation. , 1996, Genes & development.

[38]  D. Takeda,et al.  Degradation of Cdt1 during S Phase Is Skp2-independent and Is Required for Efficient Progression of Mammalian Cells through S Phase* , 2005, Journal of Biological Chemistry.

[39]  J. Parvin,et al.  Human CDC6/Cdc18 Associates with Orc1 and Cyclin-cdk and Is Selectively Eliminated from the Nucleus at the Onset of S Phase , 1998, Molecular and Cellular Biology.

[40]  O. Aparicio,et al.  Components and Dynamics of DNA Replication Complexes in S. cerevisiae: Redistribution of MCM Proteins and Cdc45p during S Phase , 1997, Cell.

[41]  U. Strausfeld,et al.  Cyclin A-dependent kinase activity affects chromatin binding of ORC, Cdc6, and MCM in egg extracts of Xenopus laevis. , 1999, European journal of biochemistry.

[42]  J. Roberts,et al.  Identification of a substrate-targeting domain in cyclin E necessary for phosphorylation of the retinoblastoma protein. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[43]  F. Oswald,et al.  The E2F transcription factor activates a replication-dependent human H2A gene in early S phase of the cell cycle , 1996, Molecular and cellular biology.

[44]  J. Pouysségur,et al.  Cyclin D1 Expression Is Regulated Positively by the p42/p44MAPK and Negatively by the p38/HOGMAPK Pathway* , 1996, The Journal of Biological Chemistry.

[45]  D. Fesquet,et al.  Cyclin A is required in S phase in normal epithelial cells. , 1992, Biochemical and biophysical research communications.

[46]  H. Nasheuer,et al.  Human DNA polymerase alpha gene: sequences controlling expression in cycling and serum-stimulated cells , 1991, Molecular and cellular biology.

[47]  Joseph R. Nevins,et al.  The E2F transcription factor is a cellular target for the RB protein , 1991, Cell.

[48]  G. Stein T98G: An anchorage‐independent human tumor cell line that exhibits stationary phase G1 arrest in vitro , 1979, Journal of cellular physiology.

[49]  D O Morgan,et al.  Cell cycle regulation of CDK2 activity by phosphorylation of Thr160 and Tyr15. , 1992, The EMBO journal.

[50]  B. Dynlacht,et al.  Differential regulation of E2F transactivation by cyclin/cdk2 complexes. , 1994, Genes & development.

[51]  S. Shurtleff,et al.  D-type cyclin-dependent kinase activity in mammalian cells , 1994, Molecular and cellular biology.

[52]  M. Pagano,et al.  Differential expression and regulation of Cyclin D1 protein in normal and tumor human cells: association with Cdk4 is required for Cyclin D1 function in G1 progression. , 1994, Oncogene.

[53]  Jiri Bartek,et al.  Phosphorylation of mammalian CDC6 by Cyclin A/CDK2 regulates its subcellular localization , 1999, The EMBO journal.

[54]  James M. Roberts,et al.  Multisite phosphorylation by Cdk2 and GSK3 controls cyclin E degradation. , 2003, Molecular cell.

[55]  T. Möröy,et al.  The Oncogenic Activity of Cyclin E Is Not Confined to Cdk2 Activation Alone but Relies on Several Other, Distinct Functions of the Protein* , 2002, The Journal of Biological Chemistry.

[56]  Anne Fernandez,et al.  Cyclin a is required for the onset of DNA replication in mammalian fibroblasts , 1991, Cell.

[57]  J. Bartek,et al.  Loss of Geminin induces rereplication in the presence of functional p53 , 2004, The Journal of cell biology.

[58]  Xiaohua Wu,et al.  The SCFSkp2 Ubiquitin Ligase Complex Interacts with the Human Replication Licensing Factor Cdt1 and Regulates Cdt1 Degradation* , 2003, Journal of Biological Chemistry.

[59]  Y. Ishimi,et al.  Phosphorylation of Mcm4 at Specific Sites by Cyclin-dependent Kinase Leads to Loss of Mcm4,6,7 Helicase Activity* , 2001, The Journal of Biological Chemistry.

[60]  D. Morgan,et al.  Activation of human cyclin-dependent kinases in vitro. , 1992, Molecular biology of the cell.

[61]  N. Dyson,et al.  pRB and p107/p130 are required for the regulated expression of different sets of E2F responsive genes. , 1997, Genes & development.

[62]  J. Nevins,et al.  The Regulated Association of Cdt1 with Minichromosome Maintenance Proteins and Cdc6 in Mammalian Cells* , 2004, Journal of Biological Chemistry.

[63]  Yan Geng,et al.  Cyclin E Ablation in the Mouse , 2003, Cell.

[64]  J. Baldassare,et al.  Phosphatidylinositol 3-Kinase Activity Regulates α-Thrombin-stimulated G1 Progression by Its Effect on Cyclin D1 Expression and Cyclin-dependent Kinase 4 Activity* , 2000, The Journal of Biological Chemistry.

[65]  J. Nevins,et al.  The interaction of RB with E2F coincides with an inhibition of the transcriptional activity of E2F. , 1992, Genes & development.

[66]  M. Ewen,et al.  A‐ and B‐type cyclins differentially modulate substrate specificity of cyclin‐cdk complexes. , 1993, The EMBO journal.

[67]  Anindya Dutta,et al.  Rereplication by Depletion of Geminin Is Seen Regardless of p53 Status and Activates a G2/M Checkpoint , 2004, Molecular and Cellular Biology.

[68]  H Nagahara,et al.  Hypo-phosphorylation of the retinoblastoma protein (pRb) by cyclin D:Cdk4/6 complexes results in active pRb. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[69]  S. Keenan,et al.  Cyclin-dependent Kinase 2 Nucleocytoplasmic Translocation Is Regulated by Extracellular Regulated Kinase* , 2001, The Journal of Biological Chemistry.

[70]  J. Baldassare,et al.  Sustained activation of extracellular-signal-regulated kinase 1 (ERK1) is required for the continued expression of cyclin D1 in G1 phase. , 1997, The Biochemical journal.

[71]  W. Sellers,et al.  Retinoblastoma Protein Contains a C-terminal Motif That Targets It for Phosphorylation by Cyclin-cdk Complexes , 1999, Molecular and Cellular Biology.

[72]  S. Elledge,et al.  G1 cyclin-dependent kinases are sufficient to initiate DNA synthesis in quiescent human fibroblasts , 1998, Current Biology.

[73]  P. K. Davis,et al.  Vivo Cyclin-dependent Kinase Complexes in 1 Tumor Suppressor Protein by G Differential Regulation of Retinoblastoma , 2001 .

[74]  S. Elledge,et al.  Phosphorylation-Dependent Ubiquitination of Cyclin E by the SCFFbw7 Ubiquitin Ligase , 2001, Science.

[75]  Bruce Stillman,et al.  Chromatin Association of Human Origin Recognition Complex, Cdc6, and Minichromosome Maintenance Proteins during the Cell Cycle: Assembly of Prereplication Complexes in Late Mitosis , 2000, Molecular and Cellular Biology.

[76]  J. Nevins,et al.  E2F3 activity is regulated during the cell cycle and is required for the induction of S phase. , 1998, Genes & development.

[77]  Stéphane Larochelle,et al.  Requirements for Cdk7 in the assembly of Cdk1/cyclin B and activation of Cdk2 revealed by chemical genetics in human cells. , 2007, Molecular cell.

[78]  Youngjo Kim,et al.  Cdt1 degradation to prevent DNA re-replication: conserved and non-conserved pathways , 2007, Cell Division.

[79]  E. Huang,et al.  E2F mediates dihydrofolate reductase promoter activation and multiprotein complex formation in human cytomegalovirus infection , 1992, Molecular and cellular biology.

[80]  J. Azizkhan,et al.  Transcription factor E2F is required for efficient expression of the hamster dihydrofolate reductase gene in vitro and in vivo , 1989, Molecular and cellular biology.

[81]  J. Nevins,et al.  E2F: a link between the Rb tumor suppressor protein and viral oncoproteins. , 1992, Science.

[82]  Nathan H. Lents,et al.  Stimulation of the Raf/MEK/ERK Cascade Is Necessary and Sufficient for Activation and Thr-160 Phosphorylation of a Nuclear-targeted CDK2* , 2002, The Journal of Biological Chemistry.

[83]  Y. Tatsumi,et al.  Cdt1 Phosphorylation by Cyclin A-dependent Kinases Negatively Regulates Its Function without Affecting Geminin Binding* , 2004, Journal of Biological Chemistry.