Mycobacterium tuberculosis Adaptation in Response to Isoniazid Treatment in a Multi-Stress System That Mimics the Host Environment

Isoniazid (INH) is an antibiotic that is widely used to treat tuberculosis (TB). Adaptation to environmental stress is a survival strategy for Mycobacterium tuberculosis and is associated with antibiotic resistance development. Here, mycobacterial adaptation following INH treatment was studied using a multi-stress system (MS), which mimics host-derived stress. Mtb H37Rv (drug-susceptible), mono-isoniazid resistant (INH-R), mono-rifampicin resistant (RIF-R), and multidrug-resistant (MDR) strains were cultivated in the MS with or without INH. The expression of stress-response genes (hspX, tgs1, icl1, and sigE) and lipoarabinomannan (LAM)-related genes (pimB, mptA, mptC, dprE1, dprE2, and embC), which play important roles in the host–pathogen interaction, were measured using real-time PCR. The different adaptations of the drug-resistant (DR) and drug-susceptible (DS) strains were presented in this work. icl1 and dprE1 were up-regulated in the DR strains in the MS, implying their roles as markers of virulence and potential drug targets. In the presence of INH, hspX, tgs1, and sigE were up-regulated in the INH-R and RIF-R strains, while icl1 and LAM-related genes were up-regulated in the H37Rv strain. This study demonstrates the complexity of mycobacterial adaptation through stress response regulation and LAM expression in response to INH under the MS, which could potentially be applied for TB treatment and monitoring in the future.

[1]  S. Sampson,et al.  Phenotypic adaptation of Mycobacterium tuberculosis to host-associated stressors that induce persister formation , 2022, Frontiers in Cellular and Infection Microbiology.

[2]  Hyungjin Eoh,et al.  Fatty acid metabolism of Mycobacterium tuberculosis: A double-edged sword , 2022, Microbial cell.

[3]  C. Tayapiwatana,et al.  The Regulation of ManLAM-Related Gene Expression in Mycobacterium tuberculosis with Different Drug Resistance Profiles Following Isoniazid Treatment , 2022, Infection and drug resistance.

[4]  R. Bhatnagar,et al.  Insights into the molecular determinants involved in Mycobacterium tuberculosis persistence and their therapeutic implications , 2021, Virulence.

[5]  Fahad Alhusain HspX-mediated survival pathways of pathogenic mycobacteria , 2021, Saudi medical journal.

[6]  Anna Allué-Guardia,et al.  Evolution of Drug-Resistant Mycobacterium tuberculosis Strains and Their Adaptation to the Human Lung Environment , 2021, Frontiers in Microbiology.

[7]  G. Prosser,et al.  Role of post‐translational modifications in the acquisition of drug resistance in Mycobacterium tuberculosis , 2020, The FEBS journal.

[8]  Huanchun Chen,et al.  Orphan response regulator Rv3143 increases antibiotic sensitivity by regulating cell wall permeability in Mycobacterium smegmatis. , 2020, Archives of biochemistry and biophysics.

[9]  Charles L. Dulberger,et al.  The mycobacterial cell envelope — a moving target , 2019, Nature Reviews Microbiology.

[10]  R. B. Abramovitch,et al.  Acid Fasting: Modulation of Mycobacterium tuberculosis Metabolism at Acidic pH. , 2019, Trends in microbiology.

[11]  C. Sundling,et al.  Lipoarabinomannan in Active and Passive Protection Against Tuberculosis , 2019, Front. Immunol..

[12]  W. Jacobs,et al.  The Mycobacterium tuberculosis capsule: a cell structure with key implications in pathogenesis. , 2019, The Biochemical journal.

[13]  Xiao-lian Zhang,et al.  Mycobacterial mannose-capped lipoarabinomannan: a modulator bridging innate and adaptive immunity , 2019, Emerging microbes & infections.

[14]  S. Gandotra,et al.  The MmpS6-MmpL6 Operon Is an Oxidative Stress Response System Providing Selective Advantage to Mycobacterium tuberculosis in Stress , 2018, The Journal of infectious diseases.

[15]  B. Kana,et al.  Application of model systems to study adaptive responses of Mycobacterium tuberculosis during infection and disease. , 2019, Advances in applied microbiology.

[16]  J. Belisle,et al.  Biochemical Characterization of Isoniazid-resistant Mycobacterium tuberculosis: Can the Analysis of Clonal Strains Reveal Novel Targetable Pathways?* , 2018, Molecular & Cellular Proteomics.

[17]  S. Gandotra,et al.  Phospholipid homeostasis, membrane tenacity and survival of Mtb in lipid rich conditions is determined by MmpL11 function , 2018, Scientific Reports.

[18]  Jesse C. J. van Dam,et al.  Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story , 2018, International journal of molecular sciences.

[19]  P. Phunpae,et al.  A comparison of Rv0559c and Rv0560c expression in drug-resistant Mycobacterium tuberculosis in response to first-line antituberculosis drugs. , 2018, Tuberculosis.

[20]  D. Sherman,et al.  Cell envelope stress in mycobacteria is regulated by the novel signal transduction ATPase IniR in response to trehalose , 2017, PLoS genetics.

[21]  E. Sancho-Vaello,et al.  Structural basis of phosphatidyl-myo-inositol mannosides biosynthesis in mycobacteria. , 2017, Biochimica et biophysica acta. Molecular and cell biology of lipids.

[22]  V. Shahrezaei,et al.  Mycobacteria Modify Their Cell Size Control under Sub-Optimal Carbon Sources , 2017, Front. Cell Dev. Biol..

[23]  J. Sperry,et al.  Targeting isocitrate lyase for the treatment of latent tuberculosis. , 2017, Drug discovery today.

[24]  D. Sarkar,et al.  Mycobacterium tuberculosis virulence‐regulator PhoP interacts with alternative sigma factor SigE during acid‐stress response , 2017, Molecular microbiology.

[25]  P. Sharma,et al.  IL-10 down-regulates the expression of survival associated gene hspX of Mycobacterium tuberculosis in murine macrophage , 2017, The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases.

[26]  N. Ahmed,et al.  Mycobacterial Dormancy Systems and Host Responses in Tuberculosis , 2017, Front. Immunol..

[27]  L. Hanna,et al.  Overview on mechanisms of isoniazid action and resistance in Mycobacterium tuberculosis. , 2016, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[28]  E. Iona,et al.  Mycobacterium tuberculosis gene expression at different stages of hypoxia-induced dormancy and upon resuscitation , 2016, Journal of Microbiology.

[29]  Liem Nguyen Antibiotic resistance mechanisms in M. tuberculosis: an update , 2016, Archives of Toxicology.

[30]  M. Barer,et al.  Phenotypically Adapted Mycobacterium tuberculosis Populations from Sputum Are Tolerant to First-Line Drugs , 2016, Antimicrobial Agents and Chemotherapy.

[31]  C. Nathan,et al.  A multi-stress model for high throughput screening against non-replicating Mycobacterium tuberculosis. , 2015, Methods in molecular biology.

[32]  M. Voskuil,et al.  In vitro models that utilize hypoxia to induce non-replicating persistence in Mycobacteria. , 2015, Methods in molecular biology.

[33]  Benjamin K. Johnson,et al.  Slow growth of Mycobacterium tuberculosis at acidic pH is regulated by phoPR and host‐associated carbon sources , 2014, Molecular microbiology.

[34]  G. Palù,et al.  Mycobacterium tuberculosis Requires the ECF Sigma Factor SigE to Arrest Phagosome Maturation , 2014, PloS one.

[35]  W. Wheat,et al.  The cell envelope glycoconjugates of Mycobacterium tuberculosis , 2014, Critical reviews in biochemistry and molecular biology.

[36]  C. Nathan,et al.  Isocitrate lyase mediates broad antibiotic tolerance in Mycobacterium tuberculosis , 2014, Nature Communications.

[37]  J. Anzola,et al.  Global Adaptation to a Lipid Environment Triggers the Dormancy-Related Phenotype of Mycobacterium tuberculosis , 2014, mBio.

[38]  Kim A. Hatch,et al.  Non-Replicating Mycobacterium tuberculosis Elicits a Reduced Infectivity Profile with Corresponding Modifications to the Cell Wall and Extracellular Matrix , 2014, PloS one.

[39]  A. Golas,et al.  Identification of novel inhibitors of nonreplicating Mycobacterium tuberculosis using a carbon starvation model. , 2013, ACS chemical biology.

[40]  Xuelin Huang,et al.  An improvement of the 2ˆ(-delta delta CT) method for quantitative real-time polymerase chain reaction data analysis. , 2013, Biostatistics, bioinformatics and biomathematics.

[41]  P. Ortiz de Montellano,et al.  The DosS-DosT/DosR Mycobacterial Sensor System , 2013, Biosensors.

[42]  Jianping Xie,et al.  The Mycobacterium DosR regulon structure and diversity revealed by comparative genomic analysis , 2013, Journal of cellular biochemistry.

[43]  S. Kaufmann,et al.  Mycobacterium tuberculosis: success through dormancy. , 2012, FEMS microbiology reviews.

[44]  Daniel J. Bretl,et al.  Adaptation to Environmental Stimuli within the Host: Two-Component Signal Transduction Systems of Mycobacterium tuberculosis , 2011, Microbiology and Molecular Reviews.

[45]  H. Maamar,et al.  Mycobacterium tuberculosis Uses Host Triacylglycerol to Accumulate Lipid Droplets and Acquires a Dormancy-Like Phenotype in Lipid-Loaded Macrophages , 2011, PLoS pathogens.

[46]  Gurdyal S Besra,et al.  Lipoarabinomannan and related glycoconjugates: structure, biogenesis and role in Mycobacterium tuberculosis physiology and host–pathogen interaction , 2011, FEMS microbiology reviews.

[47]  C. Sedwick Playing TAG with a Bacterial Stress Response , 2011, PLoS biology.

[48]  C. Sassetti,et al.  Metabolic Regulation of Mycobacterial Growth and Antibiotic Sensitivity , 2011, PLoS biology.

[49]  J. Mckinney,et al.  Mycobacterium tuberculosis persistence mutants identified by screening in isoniazid-treated mice , 2010, Proceedings of the National Academy of Sciences.

[50]  Anuj Gupta,et al.  Microarray analysis of efflux pump genes in multidrug-resistant Mycobacterium tuberculosis during stress induced by common anti-tuberculous drugs. , 2010, Microbial drug resistance.

[51]  Y. Maeda,et al.  Controlled Expression of Branch-forming Mannosyltransferase Is Critical for Mycobacterial Lipoarabinomannan Biosynthesis , 2010, The Journal of Biological Chemistry.

[52]  A. Benedetti,et al.  Standardized Treatment of Active Tuberculosis in Patients with Previous Treatment and/or with Mono-resistance to Isoniazid: A Systematic Review and Meta-analysis , 2009, PLoS medicine.

[53]  T. Parish,et al.  The Arabinosyltransferase EmbC Is Inhibited by Ethambutol in Mycobacterium tuberculosis , 2009, Antimicrobial Agents and Chemotherapy.

[54]  B. Abomoelak,et al.  A Novel In Vitro Multiple-Stress Dormancy Model for Mycobacterium tuberculosis Generates a Lipid-Loaded, Drug-Tolerant, Dormant Pathogen , 2009, PloS one.

[55]  I. Smith,et al.  Mycobacterium tuberculosis sigma factor E regulon modulates the host inflammatory response. , 2008, The Journal of infectious diseases.

[56]  Thomas D. Schmittgen,et al.  Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.

[57]  T. Parish,et al.  The Critical Role of embC in Mycobacterium tuberculosis , 2008, Journal of bacteriology.

[58]  William R Bishai,et al.  Altered expression of isoniazid-regulated genes in drug-treated dormant Mycobacterium tuberculosis. , 2008, The Journal of antimicrobial chemotherapy.

[59]  G. Besra,et al.  Identification of an α(1→6) mannopyranosyltransferase (MptA), involved in Corynebacterium glutamicum lipomanann biosynthesis, and identification of its orthologue in Mycobacterium tuberculosis , 2007, Molecular microbiology.

[60]  Sébastien Rodrigue,et al.  The sigma factors of Mycobacterium tuberculosis. , 2006, FEMS microbiology reviews.

[61]  P. Brennan,et al.  Biosynthesis of mycobacterial lipoarabinomannan: Role of a branching mannosyltransferase , 2006, Proceedings of the National Academy of Sciences.

[62]  B. Abomoelak,et al.  Identification of a diacylglycerol acyltransferase gene involved in accumulation of triacylglycerol in Mycobacterium tuberculosis under stress. , 2006, Microbiology.

[63]  F. Movahedzadeh,et al.  Deletion of the Mycobacterium tuberculosis α-Crystallin-Like hspX Gene Causes Increased Bacterial Growth In Vivo , 2006, Infection and Immunity.

[64]  P. Brennan,et al.  Decaprenylphosphoryl Arabinofuranose, the Donor of the d-Arabinofuranosyl Residues of Mycobacterial Arabinan, Is Formed via a Two-Step Epimerization of Decaprenylphosphoryl Ribose , 2005, Journal of bacteriology.

[65]  E. Muñoz-Elías,et al.  Mycobacterium tuberculosis isocitrate lyases 1 and 2 are jointly required for in vivo growth and virulence , 2005, Nature Medicine.

[66]  D. Chatterji,et al.  Stress Responses in Mycobacteria , 2005, IUBMB life.

[67]  P. Brennan,et al.  Roles of Conserved Proline and Glycosyltransferase Motifs of EmbC in Biosynthesis of Lipoarabinomannan* , 2005, Journal of Biological Chemistry.

[68]  R. Wilkinson,et al.  The stress‐responsive chaperone α‐crystallin 2 is required for pathogenesis of Mycobacterium tuberculosis , 2004, Molecular microbiology.

[69]  D. Saini,et al.  DevR-DevS is a bona fide two-component system of Mycobacterium tuberculosis that is hypoxia-responsive in the absence of the DNA-binding domain of DevR. , 2004, Microbiology.

[70]  G. Besra,et al.  The use of microarray analysis to determine the gene expression profiles of Mycobacterium tuberculosis in response to anti-bacterial compounds. , 2004, Tuberculosis.

[71]  Thomas M. Shinnick,et al.  Microarray Analysis of the Mycobacterium tuberculosis Transcriptional Response to the Acidic Conditions Found in Phagosomes , 2002, Journal of bacteriology.

[72]  J. Betts,et al.  Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling , 2002, Molecular microbiology.

[73]  James C. Sacchettini,et al.  Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase , 2000, Nature.