Morphological Image Analysis for Foodborne Bacteria Classification

The hyperspectral imaging methods used previously for analyzing food quality and safety focused on spectral data analysis to elucidate the spectral characteristics relevant to the quality and safety of food and agricultural commodities. However, the use of spatial information, including physical size, geometric characteristics, orientation, shape, color, and texture, in hyperspectral imaging analysis of food safety and quality has been limited. In this study, image processing techniques were employed for extracting information related to the morphological features of fifteen different foodborne bacterial species and serotypes, including eight Gram-negatives and seven Gram-positives, for classification. The values of nine morphological features (maximum axial length, minimum axial length, orientation, equivalent diameter, solidity, extent, perimeter, eccentricity, and equivalent circular diameter) of bacterial cells were calculated from their spectral images at 570 nm, which were selected from hyperspectral images at 89 wavelengths based on peak scattering intensity. First, two classes (Gram-negative and Gram-positive) were classified using a support vector machine (SVM) algorithm, resulted in a classification accuracy of 82.9% and kappa coefficient (kc) of 0.65. Thereafter, a classification model was developed with two features (cell orientation and perimeter) selected by principal component analysis. In addition, a decision tree (DT) algorithm was used for classification with all nine morphological features. With respect to differentiation into two classes (Gram-positive and Gram-negative), the classification accuracy for five selected bacteria species (, , Typhimurium, , and ) decreased to 80.0% (0.74 of kc) with the DT algorithm and to only 72.5% (0.64 of kc) with the SVM algorithm. Thus, the hyperspectral microscopy image analysis with morphological features is limited for classifying foodborne pathogens, so additional spectral features would be helpful for classification of foodborne bacteria.

[1]  A. E. Ritchie,et al.  Characterization of an unclassified microaerophilic bacterium associated with gastroenteritis , 1988, Journal of clinical microbiology.

[2]  Kurt C. Lawrence,et al.  Classification of Shiga toxin-producing escherichia coli (STEC) serotypes with hyperspectral microscope imagery , 2012, Defense + Commercial Sensing.

[3]  K. Young The Selective Value of Bacterial Shape , 2006, Microbiology and Molecular Biology Reviews.

[4]  Takeo Kanade,et al.  Cell segmentation in phase contrast microscopy images via semi-supervised classification over optics-related features , 2013, Medical Image Anal..

[5]  M. Koohmaraie,et al.  Prevalence and Characterization of Salmonellae in Commercial Ground Beef in the United States , 2009, Applied and Environmental Microbiology.

[6]  Wei-Yin Loh,et al.  Classification and regression trees , 2011, WIREs Data Mining Knowl. Discov..

[7]  Jitendra Malik,et al.  Color- and texture-based image segmentation using EM and its application to content-based image retrieval , 1998, Sixth International Conference on Computer Vision (IEEE Cat. No.98CH36271).

[8]  K. Lawrence,et al.  Identification of Staphylococcus species with hyperspectral microscope imaging and classification algorithms , 2016, Journal of Food Measurement and Characterization.

[9]  Abdul Rahman Ramli,et al.  A Framework for White Blood Cell Segmentation in Microscopic Blood Images Using Digital Image Processing , 2009, Biological Procedures Online.

[10]  S. Roseman,et al.  Periplasmic space in Salmonella typhimurium and Escherichia coli. , 1977, The Journal of biological chemistry.

[11]  R M Macnab,et al.  Examination of bacterial flagellation by dark-field microscopy , 1976, Journal of clinical microbiology.

[12]  Henry Horng-Shing Lu,et al.  Segmentation of cDNA microarray images by kernel density estimation , 2008, J. Biomed. Informatics.

[13]  Tianxu Zhang,et al.  Local entropy-based transition region extraction and thresholding , 2003, Pattern Recognit. Lett..

[14]  Michael Brady,et al.  Automatic segmentation of adherent biological cell boundaries and nuclei from brightfield microscopy images , 2012, Machine Vision and Applications.

[15]  C. Jacobs-Wagner,et al.  Bacterial cell shape , 2005, Nature Reviews Microbiology.

[16]  Euiwon Bae,et al.  Label‐free identification of bacterial microcolonies via elastic scattering , 2011, Biotechnology and bioengineering.

[17]  Fengxi Song,et al.  Feature Selection Using Principal Component Analysis , 2010, 2010 International Conference on System Science, Engineering Design and Manufacturing Informatization.

[18]  J. Sim,et al.  The kappa statistic in reliability studies: use, interpretation, and sample size requirements. , 2005, Physical therapy.

[19]  Quansheng Chen,et al.  Classification of foodborne pathogens using near infrared (NIR) laser scatter imaging system with multivariate calibration , 2015, Scientific Reports.

[20]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[21]  W. R. Windham,et al.  Hyperspectral Microscope Imaging Methods to Classify Gram-Positive and Gram-Negative Foodborne Pathogenic Bacteria , 2015 .

[22]  Kurt C. Lawrence,et al.  Acousto-Optic Tunable Filter Hyperspectral Microscope Imaging Method for Characterizing Spectra from Foodborne Pathogens , 2012 .

[23]  J. Miller,et al.  Comparison of traditional and molecular methods of typing isolates of Staphylococcus aureus , 1994, Journal of clinical microbiology.

[24]  Daniel Heim,et al.  Detection and Segmentation of Cell Nuclei in Virtual Microscopy Images: A Minimum-Model Approach , 2012, Scientific Reports.

[25]  Y. Millemann,et al.  Value of plasmid profiling, ribotyping, and detection of IS200 for tracing avian isolates of Salmonella typhimurium and S. enteritidis , 1995, Journal of clinical microbiology.

[26]  Fabian J. Theis,et al.  An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy , 2013, BMC Bioinformatics.

[27]  J. Paul Robinson,et al.  Light‐scattering sensor for real‐time identification of Vibrio parahaemolyticus, Vibrio vulnificus and Vibrio cholerae colonies on solid agar plate , 2012, Microbial biotechnology.