Functional connectivity as revealed by independent component analysis of resting-state fNIRS measurements

As a promising non-invasive imaging technique, functional near infrared spectroscopy (fNIRS) has recently earned increasing attention in resting-state functional connectivity (RSFC) studies. Preliminary fNIRS-based RSFC studies adopted a seed correlation approach and yielded interesting results. However, the seed correlation approach has several inherent problems, such as neglecting of interactions among multiple regions and a dependence on seed region selection. Moreover, ineffectively reduced noise and artifacts in fNIRS measurements also negatively affect RSFC results. In this study, independent component analysis (ICA) was introduced to meet these challenges in RSFC detection based on resting-state fNIRS measurements. The results of ICA on data from the sensorimotor and the visual systems both showed functional system-specific RSFC maps. Results from comparison between ICA and the conventional seed correlation approach demonstrated, both qualitatively and quantitatively, the superior performance of ICA with higher sensitivity and specificity, especially in the case of higher noise level. The capability of ICA to separate noise and artifacts from resting-state fNIRS data was also demonstrated, and the extracted noise and artifacts were illustrated. Finally, some practical issues on performing ICA on resting-state fNIRS data were discussed.

[1]  J. Markham,et al.  Blind identification of evoked human brain activity with independent component analysis of optical data , 2009, Human brain mapping.

[2]  J. Rissanen A UNIVERSAL PRIOR FOR INTEGERS AND ESTIMATION BY MINIMUM DESCRIPTION LENGTH , 1983 .

[3]  R. Oostenveld,et al.  Frontal theta EEG activity correlates negatively with the default mode network in resting state. , 2008, International journal of psychophysiology : official journal of the International Organization of Psychophysiology.

[4]  F. Irani,et al.  Functional Near Infrared Spectroscopy (fNIRS): An Emerging Neuroimaging Technology with Important Applications for the Study of Brain Disorders , 2007, The Clinical neuropsychologist.

[5]  Karl J. Friston Modes or models: a critique on independent component analysis for fMRI , 1998, Trends in Cognitive Sciences.

[6]  L. Parsons,et al.  Interregional connectivity to primary motor cortex revealed using MRI resting state images , 1999, Human brain mapping.

[7]  J. Pekar,et al.  A method for making group inferences from functional MRI data using independent component analysis , 2001, Human brain mapping.

[8]  H. Akaike A new look at the statistical model identification , 1974 .

[9]  Aapo Hyvärinen,et al.  Independent component analysis of short-time Fourier transforms for spontaneous EEG/MEG analysis , 2010, NeuroImage.

[10]  A. Fingelkurts,et al.  Functional connectivity in the brain—is it an elusive concept? , 2005, Neuroscience & Biobehavioral Reviews.

[11]  E. Formisano,et al.  Functional connectivity as revealed by spatial independent component analysis of fMRI measurements during rest , 2004, Human brain mapping.

[12]  Emery N Brown,et al.  Adaptive filtering for global interference cancellation and real-time recovery of evoked brain activity: a Monte Carlo simulation study. , 2007, Journal of biomedical optics.

[13]  M. Fox,et al.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging , 2007, Nature Reviews Neuroscience.

[14]  James V. Stone Independent component analysis: an introduction , 2002, Trends in Cognitive Sciences.

[15]  S Makeig,et al.  Analysis of fMRI data by blind separation into independent spatial components , 1998, Human brain mapping.

[16]  Aapo Hyvärinen,et al.  Fast and robust fixed-point algorithms for independent component analysis , 1999, IEEE Trans. Neural Networks.

[17]  V. Haughton,et al.  Frequencies contributing to functional connectivity in the cerebral cortex in "resting-state" data. , 2001, AJNR. American journal of neuroradiology.

[18]  R. C. Oldfield The assessment and analysis of handedness: the Edinburgh inventory. , 1971, Neuropsychologia.

[19]  D. Boas,et al.  HomER: a review of time-series analysis methods for near-infrared spectroscopy of the brain. , 2009, Applied optics.

[20]  Quan Zhang,et al.  Adaptive filtering to reduce global interference in non-invasive NIRS measures of brain activation: How well and when does it work? , 2009, NeuroImage.

[21]  Abraham Z. Snyder,et al.  Resting-state functional connectivity in the human brain revealed with diffuse optical tomography , 2009, NeuroImage.

[22]  Aapo Hyvärinen,et al.  Independent component analysis of nondeterministic fMRI signal sources , 2003, NeuroImage.

[23]  D. Delpy,et al.  System for long-term measurement of cerebral blood and tissue oxygenation on newborn infants by near infra-red transillumination , 1988, Medical and Biological Engineering and Computing.

[24]  T. Sejnowski,et al.  Human Brain Mapping 6:368–372(1998) � Independent Component Analysis of fMRI Data: Examining the Assumptions , 2022 .

[25]  Bülent Sankur,et al.  Extraction of cognitive activity-related waveforms from functional near-infrared spectroscopy signals , 2006, Medical and Biological Engineering and Computing.

[26]  I. Miyai,et al.  Removal of the skin blood flow artifact in functional near-infrared spectroscopic imaging data through independent component analysis. , 2007, Journal of biomedical optics.

[27]  Yoko Hoshi,et al.  Functional near-infrared spectroscopy: current status and future prospects. , 2007, Journal of biomedical optics.

[28]  J. VanMeter,et al.  Event-related fast optical signal in a rapid object recognition task: Improving detection by the independent component analysis , 2008, Brain Research.

[29]  Armando Malanda,et al.  Independent Component Analysis as a Tool to Eliminate Artifacts in EEG: A Quantitative Study , 2003, Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society.

[30]  Masako Okamoto,et al.  Automated cortical projection of head-surface locations for transcranial functional brain mapping , 2005, NeuroImage.

[31]  Chaozhe Zhu,et al.  Use of fNIRS to assess resting state functional connectivity , 2010, Journal of Neuroscience Methods.

[32]  C. F. Beckmann,et al.  Tensorial extensions of independent component analysis for multisubject FMRI analysis , 2005, NeuroImage.

[33]  A. Villringer,et al.  Spontaneous Low Frequency Oscillations of Cerebral Hemodynamics and Metabolism in Human Adults , 2000, NeuroImage.

[34]  H. Jasper,et al.  The ten-twenty electrode system of the International Federation. The International Federation of Clinical Neurophysiology. , 1999, Electroencephalography and clinical neurophysiology. Supplement.

[35]  M. Greicius,et al.  Default-mode network activity distinguishes Alzheimer's disease from healthy aging: Evidence from functional MRI , 2004, Proc. Natl. Acad. Sci. USA.

[36]  L. Lathauwer,et al.  Detection of fast neuronal signals in the motor cortex from functional near infrared spectroscopy measurements using independent component analysis , 2006, Medical and Biological Engineering and Computing.