Global roles of Ssn6 in Tup1- and Nrg1-dependent gene regulation in the fungal pathogen, Candida albicans.

In budding yeast, Tup1 and Ssn6/Cyc8 form a corepressor that regulates a large number of genes. This Tup1-Ssn6 corepressor appears to be conserved from yeast to man. In the pathogenic fungus Candida albicans, Tup1 regulates cellular morphogenesis, phenotypic switching, and metabolism, but the role of Ssn6 remains unclear. We show that there are clear differences in the morphological and invasive phenotypes of C. albicans ssn6 and tup1 mutants. Unlike Tup1, Ssn6 depletion promoted morphological events reminiscent of phenotypic switching rather than filamentous growth. Transcript profiling revealed minimal overlap between the Ssn6 and Tup1 regulons. Hypha-specific genes, which are repressed by Tup1 and Nrg1, were not derepressed in ssn6 cells under the conditions studied. In contrast, the phase specific gene WH11 was derepressed in ssn6 cells, but not in tup1 or nrg1 cells. Hence Ssn6 and Tup1 play distinct roles in C. albicans. Nevertheless, both Ssn6 and Tup1 were required for the Nrg1-mediated repression of an artificial NRE promoter, and lexA-Nrg1 mediated repression in the C. albicans one-hybrid system. These observations are explained in models that are generally consistent with the Tup1-Ssn6 paradigm in budding yeast.

[1]  G. Fink,et al.  Suppression of hyphal formation in Candida albicans by mutation of a STE12 homolog. , 1994, Science.

[2]  A. Johnson,et al.  Development of Streptococcus thermophilus lacZ as a reporter gene for Candida albicans. , 2001, Microbiology.

[3]  M. Carlson Genetics of transcriptional regulation in yeast: connections to the RNA polymerase II CTD. , 1997, Annual review of cell and developmental biology.

[4]  M. Redd,et al.  A Complex Composed of Tup1 and Ssn6 Represses Transcription in Vitro* , 1997, The Journal of Biological Chemistry.

[5]  K. Luo,et al.  SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast. , 1997, Genes & development.

[6]  C. Russell,et al.  Expression of one-hybrid fusions with Staphylococcus aureus lexA in Candida albicans confirms that Nrg1 is a transcriptional repressor and that Gcn4 is a transcriptional activator. , 2005, Fungal genetics and biology : FG & B.

[7]  Alistair J. P. Brown,et al.  CIp10, an efficient and convenient integrating vector for Candida albicans , 2000 .

[8]  G. Fink,et al.  Methods in yeast genetics , 1979 .

[9]  N. Martin,et al.  CandidaDB: a genome database for Candida albicans pathogenomics , 2004, Nucleic Acids Res..

[10]  Alistair J. P. Brown,et al.  APSES proteins regulate morphogenesis and metabolism in Candida albicans. , 2004, Molecular biology of the cell.

[11]  J. Nuessen,et al.  ALS3 and ALS8 represent a single locus that encodes a Candida albicans adhesin; functional comparisons between Als3p and Als1p. , 2004, Microbiology.

[12]  A. Johnson,et al.  Control of filament formation in Candida albicans by the transcriptional repressor TUP1. , 1997, Science.

[13]  Alexander D. Johnson,et al.  Ssn6-Tup1 is a general repressor of transcription in yeast , 1992, Cell.

[14]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[15]  J. Davie,et al.  Histone-Dependent Association of Tup1-Ssn6 with Repressed Genes In Vivo , 2002, Molecular and Cellular Biology.

[16]  J. Ernst,et al.  A potential phosphorylation site for an A-type kinase in the Efg1 regulator protein contributes to hyphal morphogenesis of Candida albicans. , 2001, Genetics.

[17]  N. Lehming,et al.  Srb7p is a physical and physiological target of Tup1p , 2000, The EMBO journal.

[18]  M. Feldbrügge,et al.  A homologue of the transcriptional repressor Ssn6p antagonizes cAMP signalling in Ustilago maydis , 2001, Molecular microbiology.

[19]  D. Soll,et al.  High-frequency switching of colony morphology in Candida albicans. , 1985, Science.

[20]  Ronald W. Davis,et al.  Metabolic specialization associated with phenotypic switching in Candida albicans , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[21]  D. Kadosh,et al.  Induction of the Candida albicans filamentous growth program by relief of transcriptional repression: a genome-wide analysis. , 2005, Molecular biology of the cell.

[22]  J. Davie,et al.  Tup1-Ssn6 Interacts with Multiple Class I Histone Deacetylases in Vivo* , 2003, Journal of Biological Chemistry.

[23]  F E Williams,et al.  The CYC8 and TUP1 proteins involved in glucose repression in Saccharomyces cerevisiae are associated in a protein complex , 1991, Molecular and cellular biology.

[24]  Zhengjian Zhang,et al.  Redundant Mechanisms Are Used by Ssn6-Tup1 in Repressing Chromosomal Gene Transcription in Saccharomyces cerevisiae* , 2004, Journal of Biological Chemistry.

[25]  D. Tzamarias,et al.  The Snf1 kinase controls glucose repression in yeast by modulating interactions between the Mig1 repressor and the Cyc8‐Tup1 co‐repressor , 2004, EMBO reports.

[26]  D. Soll,et al.  Roles of TUP1 in Switching, Phase Maintenance, and Phase-Specific Gene Expression in Candida albicans , 2002, Eukaryotic Cell.

[27]  D. Tzamarias,et al.  The Tup1-Cyc8 Protein Complex Can Shift from a Transcriptional Co-repressor to a Transcriptional Co-activator* , 1999, The Journal of Biological Chemistry.

[28]  Yudong D. He,et al.  Functional Discovery via a Compendium of Expression Profiles , 2000, Cell.

[29]  D. Tzamarias,et al.  Identification of residues in the TPR domain of Ssn6 responsible for interaction with the Tup1 protein , 2000, FEBS letters.

[30]  J. Berman,et al.  The distinct morphogenic states of Candida albicans. , 2004, Trends in microbiology.

[31]  K. Komachi,et al.  The WD repeats of Tup1 interact with the homeo domain protein alpha 2. , 1994, Genes & development.

[32]  S. R. Green,et al.  Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae. , 2004, Molecular biology of the cell.

[33]  M. Schaller,et al.  Differential expression of secreted aspartyl proteinases in a model of human oral candidosis and in patient samples from the oral cavity , 1998, Molecular microbiology.

[34]  B. R. Braun,et al.  NRG1, a repressor of filamentous growth in C.albicans, is down‐regulated during filament induction , 2001, The EMBO journal.

[35]  F. Tekaia,et al.  Transcript profiling in Candida albicans reveals new cellular functions for the transcriptional repressors CaTup1, CaMig1 and CaNrg1 , 2001, Molecular microbiology.

[36]  D. Irwin,et al.  Isogenic strain construction and gene mapping in Candida albicans. , 1993, Genetics.

[37]  Yue Wang,et al.  Hgc1, a novel hypha‐specific G1 cyclin‐related protein regulates Candida albicans hyphal morphogenesis , 2004, The EMBO journal.

[38]  A. Johnson,et al.  Turning genes off by Ssn6-Tup1: a conserved system of transcriptional repression in eukaryotes. , 2000, Trends in biochemical sciences.

[39]  H. Ronne,et al.  Negative control of the Mig1p repressor by Snf1p-dependent phosphorylation in the absence of glucose. , 1998, European journal of biochemistry.

[40]  Alexander D. Johnson,et al.  Identification and characterization of TUP1-regulated genes in Candida albicans. , 2000, Genetics.

[41]  Zhengjian Zhang,et al.  Ssn6–Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae , 2004, The EMBO journal.

[42]  S Falkow,et al.  Yeast-enhanced green fluorescent protein (yEGFP): a reporter of gene expression in Candida albicans. , 1997, Microbiology.

[43]  K. Struhl,et al.  Distinct TPR motifs of Cyc8 are involved in recruiting the Cyc8-Tup1 corepressor complex to differentially regulated promoters. , 1995, Genes & development.

[44]  F. Sherman Getting started with yeast. , 2002, Methods in enzymology.

[45]  S. Elledge,et al.  The DNA Replication and Damage Checkpoint Pathways Induce Transcription by Inhibition of the Crt1 Repressor , 1998, Cell.

[46]  R. Lo,et al.  Groucho/transducin-like enhancer of split (TLE) family members interact with the yeast transcriptional co-repressor SSN6 and mammalian SSN6-related proteins: implications for evolutionary conservation of transcription repression mechanisms. , 1999, The Biochemical journal.

[47]  W. Huh,et al.  Ssn6, an important factor of morphological conversion and virulence in Candida albicans , 2003, Molecular microbiology.

[48]  A. Brown,et al.  The Candida albicans HYR1 gene, which is activated in response to hyphal development, belongs to a gene family encoding yeast cell wall proteins , 1996, Journal of bacteriology.

[49]  K. Struhl,et al.  Functional dissection of the yeast Cyc8–Tupl transcriptional co-repressor complex , 1994, Nature.

[50]  A. Brown,et al.  NRG1 represses yeast–hypha morphogenesis and hypha‐specific gene expression in Candida albicans , 2001, The EMBO journal.

[51]  A. Gillum,et al.  Isolation of the Candida albicans gene for orotidine-5′-phosphate decarboxylase by complementation of S. cerevisiae ura3 and E. coli pyrF mutations , 2004, Molecular and General Genetics MGG.

[52]  M Vingron,et al.  Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae , 1998, Yeast.

[53]  P. Sudbery,et al.  The MET3 promoter: a new tool for Candida albicans molecular genetics , 1999, Molecular microbiology.

[54]  S. Macaskill,et al.  Gcn4 co‐ordinates morphogenetic and metabolic responses to amino acid starvation in Candida albicans , 2002, The EMBO journal.

[55]  S. Rupp LacZ assays in yeast. , 2002, Methods in enzymology.

[56]  D. Tzamarias,et al.  Hrs1/Med3 Is a Cyc8-Tup1 Corepressor Target in the RNA Polymerase II Holoenzyme* , 2000, The Journal of Biological Chemistry.

[57]  Stephen G Oliver,et al.  Proteomic response to amino acid starvation inCandida albicans and Saccharomyces cerevisiae , 2004, Proteomics.

[58]  G. Fink,et al.  Nonfilamentous C. albicans Mutants Are Avirulent , 1997, Cell.

[59]  J. Ernst Transcription factors in Candida albicans - environmental control of morphogenesis. , 2000, Microbiology.

[60]  D. Edmondson,et al.  Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4. , 1996, Genes & development.

[61]  D. Soll,et al.  Misexpression of the white-phase-specific gene WH11 in the opaque phase of Candida albicans affects switching and virulence , 1997, Infection and immunity.

[62]  A. Johnson,et al.  TUP1, CPH1 and EFG1 make independent contributions to filamentation in candida albicans. , 2000, Genetics.

[63]  W. Fonzi,et al.  HWP1 Functions in the Morphological Development of Candida albicans Downstream ofEFG1, TUP1, and RBF1 , 1999, Journal of bacteriology.