High-Resolution Chromatin Dynamics during a Yeast Stress Response

[1]  B. Garcia,et al.  Histone Methylation Has Dynamics Distinct from Those of Histone Acetylation in Cell Cycle Reentry from Quiescence , 2014, Molecular and Cellular Biology.

[2]  O. Rando,et al.  Mechanisms underlying nucleosome positioning in vivo. , 2014, Annual review of biophysics.

[3]  O. Rando,et al.  A Histone Acetylation Switch Regulates H2A.Z Deposition by the SWR-C Remodeling Enzyme , 2013, Science.

[4]  I. Amit,et al.  High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states , 2013, Nature Protocols.

[5]  Nir Friedman,et al.  A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. , 2012, Molecular cell.

[6]  N. Friedman,et al.  Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response , 2012, PLoS biology.

[7]  O. Rando,et al.  Combinatorial complexity in chromatin structure and function: revisiting the histone code. , 2012, Current opinion in genetics & development.

[8]  Barbara M. Bakker,et al.  Progressive methylation of ageing histones by Dot1 functions as a timer , 2011, EMBO reports.

[9]  Nir Friedman,et al.  Patterns and Mechanisms of Ancestral Histone Protein Inheritance in Budding Yeast , 2011, PLoS biology.

[10]  Philip Lijnzaad,et al.  The specificity and topology of chromatin interaction pathways in yeast. , 2011, Molecular cell.

[11]  N. Friedman,et al.  Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization , 2011, The EMBO journal.

[12]  P. Thibault,et al.  H3 Lysine 4 Is Acetylated at Active Gene Promoters and Is Regulated by H3 Lysine 4 Methylation , 2011, PLoS genetics.

[13]  Timothy J. Durham,et al.  "Systematic" , 1966, Comput. J..

[14]  J. Weissman,et al.  Nascent transcript sequencing visualizes transcription at nucleotide resolution , 2011, Nature.

[15]  Peter J. Park,et al.  An assessment of histone-modification antibody quality , 2010, Nature Structural &Molecular Biology.

[16]  Guillaume J. Filion,et al.  Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells , 2010, Cell.

[17]  Steven Henikoff,et al.  Capturing the dynamic epigenome , 2010, Genome Biology.

[18]  N. Friedman,et al.  RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast , 2010, Genome Biology.

[19]  Uwe Ohler,et al.  A paired-end sequencing strategy to map the complex landscape of transcription initiation , 2010, Nature Methods.

[20]  J. Rouse Faculty Opinions recommendation of Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX. , 2010 .

[21]  S. Buratowski Progression through the RNA polymerase II CTD cycle. , 2009, Molecular cell.

[22]  Bing Ren,et al.  Discovery and Annotation of Functional Chromatin Signatures in the Human Genome , 2009, PLoS Comput. Biol..

[23]  Cizhong Jiang,et al.  Nucleosome positioning and gene regulation: advances through genomics , 2009, Nature Reviews Genetics.

[24]  L. Steinmetz,et al.  Bidirectional promoters generate pervasive transcription in yeast , 2009, Nature.

[25]  Michael F. Lin,et al.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.

[26]  Jerry L. Workman,et al.  Crosstalk among Histone Modifications , 2008, Cell.

[27]  N. Friedman,et al.  Cell Cycle– and Chaperone-Mediated Regulation of H3K56ac Incorporation in Yeast , 2008, PLoS genetics.

[28]  Daniel S. Yuan,et al.  Probing Nucleosome Function: A Highly Versatile Library of Synthetic Histone H3 and H4 Mutants , 2008, Cell.

[29]  F. Robert,et al.  Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. , 2007, Molecular cell.

[30]  Nir Friedman,et al.  Dynamics of Replication-Independent Histone Turnover in Budding Yeast , 2007, Science.

[31]  Michael A. Freitas,et al.  Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes. , 2007, Molecular cell.

[32]  J. Tyler,et al.  The Histone Chaperone Anti-silencing Function 1 Stimulates the Acetylation of Newly Synthesized Histone H3 in S-phase* , 2007, Journal of Biological Chemistry.

[33]  J. Boeke,et al.  The Sirtuins Hst3 and Hst4p Preserve Genome Integrity by Controlling Histone H3 Lysine 56 Deacetylation , 2006, Current Biology.

[34]  Nancy L. Maas,et al.  Cell cycle and checkpoint regulation of histone H3 K56 acetylation by Hst3 and Hst4. , 2006, Molecular cell.

[35]  A. Schmid,et al.  The Histone Chaperone Asf1 Increases the Rate of Histone Eviction at the Yeast PHO5 and PHO8 Promoters* , 2006, Journal of Biological Chemistry.

[36]  Mathieu Blanchette,et al.  Variant Histone H2A.Z Is Globally Localized to the Promoters of Inactive Yeast Genes and Regulates Nucleosome Positioning , 2005, PLoS biology.

[37]  S. Henikoff,et al.  Assembly of variant histones into chromatin. , 2005, Annual review of cell and developmental biology.

[38]  N. Friedman,et al.  Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae , 2005, PLoS biology.

[39]  C. Allis,et al.  Mitotic Phosphorylation of Histone H3: Spatio-Temporal Regulation by Mammalian Aurora Kinases , 2002, Molecular and Cellular Biology.

[40]  Ronald W. Davis,et al.  Replication dynamics of the yeast genome. , 2001, Science.

[41]  D. Botstein,et al.  Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.

[42]  R. Kornberg,et al.  Twenty-Five Years of the Nucleosome, Fundamental Particle of the Eukaryote Chromosome , 1999, Cell.

[43]  J. Wu,et al.  Disruption of the nucleosomes at the replication fork. , 1993, The EMBO journal.