Symmetric group testing and superimposed codes

We describe a generalization of the group testing problem termed symmetric group testing. Unlike in classical binary group testing, the roles played by the input symbols zero and one are “symmetric” while the outputs are drawn from a ternary alphabet. Using an information-theoretic approach, we derive sufficient and necessary conditions for the number of tests required for noise-free and noisy reconstructions. Furthermore, we extend the notion of disjunct (zero-false-drop) and separable (uniquely decipherable) codes to the case of symmetric group testing. For the new family of codes, we derive bounds on their size based on probabilistic methods, and provide construction methods based on coding theoretic ideas.

[1]  Tayuan Huang,et al.  A Note on Decoding of Superimposed Codes , 2003, J. Comb. Optim..

[2]  Anthony J. Macula,et al.  A simple construction of d-disjunct matrices with certain constant weights , 1996, Discret. Math..

[3]  Arkadii G. D'yachkov,et al.  New constructions of superimposed codes , 2000, IEEE Trans. Inf. Theory.

[4]  George Atia,et al.  Boolean Compressed Sensing and Noisy Group Testing , 2009, IEEE Transactions on Information Theory.

[5]  Annalisa De Bonis,et al.  Constructions of generalized superimposed codes with applications to group testing and conflict resolution in multiple access channels , 2003, Theor. Comput. Sci..

[6]  Richard C. Singleton,et al.  Nonrandom binary superimposed codes , 1964, IEEE Trans. Inf. Theory.

[7]  Ding-Zhu Du,et al.  Efficient Constructions of Disjunct Matrices with Applications to DNA Library Screening , 2007, J. Comput. Biol..

[8]  Annalisa De Bonis,et al.  Efficient Constructions of Generalized Superimposed Codes with Applications to Group Testing and Conflict Resolution in Multiple Access Channels , 2002, ESA.

[9]  Noga Alon,et al.  The Probabilistic Method , 2015, Fundamentals of Ramsey Theory.

[10]  F. Hwang Three Versions of a Group Testing Game , 1984 .

[11]  Peter Damaschke Threshold Group Testing , 2005, Electron. Notes Discret. Math..

[12]  R. Dorfman The Detection of Defective Members of Large Populations , 1943 .

[13]  S. Blumenthal,et al.  SYMMETRIC BINOMIAL GROUP-TESTING WITH THREE OUTCOMES , 1971 .