Discovery of stripe rust resistance with incomplete dominance in wild emmer wheat using bulked segregant analysis sequencing

[1]  Robert P. Davey,et al.  Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement , 2021, Nature biotechnology.

[2]  Xianming Chen,et al.  Novel stripe rust all‐stage resistance loci identified in a worldwide collection of durum wheat using genome‐wide association mapping , 2021, The plant genome.

[3]  C. Uauy,et al.  Genome-wide association mapping identifies yellow rust resistance loci in Ethiopian durum wheat germplasm , 2021, PloS one.

[4]  Jian-Min Zhou,et al.  The ZAR1 resistosome is a calcium-permeable channel triggering plant immune signaling , 2021, Cell.

[5]  Zhonghu He,et al.  Genome-wide association mapping of leaf rust and stripe rust resistance in wheat accessions using the 90K SNP array , 2021, Theoretical and Applied Genetics.

[6]  P. Schulze-Lefert,et al.  Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme , 2020, Science.

[7]  Bernardo J. Clavijo,et al.  Multiple wheat genomes reveal global variation in modern breeding , 2020, Nature.

[8]  P. Qi,et al.  Population structure and genetic basis of the stripe rust resistance of 140 Chinese wheat landraces revealed by a genome-wide association study. , 2020, Plant science : an international journal of experimental plant biology.

[9]  Xueying Zhang,et al.  Combining a New Exome Capture Panel With an Effective varBScore Algorithm Accelerates BSA-Based Gene Cloning in Wheat , 2020, Frontiers in Plant Science.

[10]  E. Nogales,et al.  Structure of the activated ROQ1 resistosome directly recognizing the pathogen effector XopQ , 2020, Science.

[11]  D. See,et al.  Genome-Wide Association Study and Gene Specific Markers Identified 51 Genes or QTL for Resistance to Stripe Rust in U.S. Winter Wheat Cultivars and Breeding Lines , 2020, Frontiers in Plant Science.

[12]  D. Tang,et al.  An ankyrin-repeat and WRKY-domain-containing immune receptor confers stripe rust resistance in wheat , 2020, Nature Communications.

[13]  B. Steuernagel,et al.  Stem rust resistance in wheat is suppressed by a subunit of the mediator complex , 2020, Nature Communications.

[14]  Kang Zhang,et al.  QTL-Seq and Sequence Assembly Rapidly Mapped the Gene BrMYBL2.1 for the Purple Trait in Brassica rapa , 2020, Scientific Reports.

[15]  C. Pozniak,et al.  Three previously characterized resistances to yellow rust are encoded by a single locus Wtk1 , 2020, bioRxiv.

[16]  Wende Liu,et al.  Structures of plant resistosome reveal how NLR immune receptors are activated , 2019, aBIOTECH.

[17]  Joseph E. Cavanaugh,et al.  Ordered quantile normalization: a semiparametric transformation built for the cross-validation era , 2019, Journal of applied statistics.

[18]  M. Luo,et al.  An ancestral NB-LRR with duplicated 3′UTRs confers stripe rust resistance in wheat and barley , 2019, Nature Communications.

[19]  Arthur T. O. Melo,et al.  Durum wheat genome highlights past domestication signatures and future improvement targets , 2019, Nature Genetics.

[20]  Y. Qi,et al.  Ligand-triggered allosteric ADP release primes a plant NLR complex , 2019, Science.

[21]  Y. Qi,et al.  Reconstitution and structure of a plant NLR resistosome conferring immunity , 2019, Science.

[22]  T. Fahima,et al.  Wheat tandem kinases provide insights on disease-resistance gene flow and host-parasite co-evolution. , 2019, The Plant journal : for cell and molecular biology.

[23]  John W. Scott,et al.  Ty-6, a major begomovirus resistance gene on chromosome 10, is effective against Tomato yellow leaf curl virus and Tomato mottle virus , 2019, Theoretical and Applied Genetics.

[24]  J. Dvorak,et al.  Improved Genome Sequence of Wild Emmer Wheat Zavitan with the Aid of Optical Maps , 2019, G3: Genes, Genomes, Genetics.

[25]  L. Paulin,et al.  Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family , 2018, Nature Communications.

[26]  B. Steuernagel,et al.  BED-domain-containing immune receptors confer diverse resistance spectra to yellow rust , 2018, Nature Plants.

[27]  Jonathan D. G. Jones,et al.  Shifting the limits in wheat research and breeding using a fully annotated reference genome , 2018, Science.

[28]  Jiajie Wu,et al.  Remapping of the stripe rust resistance gene Yr10 in common wheat , 2018, Theoretical and Applied Genetics.

[29]  J. Dubcovsky,et al.  Combining Traditional Mutagenesis with New High-Throughput Sequencing and Genome Editing to Reveal Hidden Variation in Polyploid Wheat. , 2017, Annual review of genetics.

[30]  M. Pumphrey,et al.  Characterization of molecular diversity and genome-wide mapping of loci associated with resistance to stripe rust and stem rust in Ethiopian bread wheat accessions , 2017, BMC Plant Biology.

[31]  M. Pumphrey,et al.  Loci associated with resistance to stripe rust (Puccinia striiformis f. sp. tritici) in a core collection of spring wheat (Triticum aestivum) , 2017, PloS one.

[32]  A. Kilian,et al.  Genome wide association mapping of stripe rust resistance in Afghan wheat landraces. , 2016, Plant science : an international journal of experimental plant biology.

[33]  T. Fahima,et al.  Evolution and Adaptation of Wild Emmer Wheat Populations to Biotic and Abiotic Stresses. , 2016, Annual review of phytopathology.

[34]  R. Terauchi,et al.  QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea , 2016, Plant biotechnology journal.

[35]  S. Chao,et al.  Genetic Architecture of Resistance to Stripe Rust in a Global Winter Wheat Germplasm Collection , 2016, G3: Genes, Genomes, Genetics.

[36]  J. Patrick,et al.  A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat , 2015, Nature Genetics.

[37]  Hans-Joachim Braun,et al.  Research investment implications of shifts in the global geography of wheat stripe rust , 2015, Nature Plants.

[38]  Luyan Zhang,et al.  QTL IciMapping: Integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations , 2015 .

[39]  Laxmi,et al.  Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea , 2015, DNA research : an international journal for rapid publication of reports on genes and genomes.

[40]  E. Knaap,et al.  Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq , 2015, Theoretical and Applied Genetics.

[41]  A. Laroche,et al.  The stripe rust resistance gene Yr10 encodes an evolutionary-conserved and unique CC-NBS-LRR sequence in wheat. , 2014, Molecular plant.

[42]  D. See,et al.  Molecular mapping of genes Yr64 and Yr65 for stripe rust resistance in hexaploid derivatives of durum wheat accessions PI 331260 and PI 480016 , 2014, Theoretical and Applied Genetics.

[43]  Zhonghua Zhang,et al.  QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber , 2014, Theoretical and Applied Genetics.

[44]  Morten Lillemo,et al.  Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array , 2014, Plant biotechnology journal.

[45]  R. Terauchi,et al.  QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. , 2013, The Plant journal : for cell and molecular biology.

[46]  M. Trick,et al.  Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat , 2012, BMC Plant Biology.

[47]  Alexandra M. E. Jones,et al.  Prf immune complexes of tomato are oligomeric and contain multiple Pto-like kinases that diversify effector recognition. , 2010, The Plant journal : for cell and molecular biology.

[48]  S. Xu,et al.  Identification, gene postulation and molecular tagging of a stripe rust resistance gene in synthetic wheat CI142 , 2009 .

[49]  J. Dubcovsky,et al.  A Kinase-START Gene Confers Temperature-Dependent Resistance to Wheat Stripe Rust , 2009, Science.

[50]  B. Keller,et al.  A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat , 2009, Science.

[51]  X. Chen,et al.  Genetics and molecular mapping of genes for race-specific all-stage resistance and non-race-specific high-temperature adult-plant resistance to stripe rust in spring wheat cultivar Alpowa , 2007, Theoretical and Applied Genetics.

[52]  F. Carland,et al.  Genetic characterization of the Pto locus of tomato: semi-dominance and cosegregation of resistance to Pseadomonas syringae pathovar tomato and sensitivity to the insecticide Fenthion , 1993, Molecular and General Genetics MGG.

[53]  Jonathan D. G. Jones,et al.  Arabidopsis RPP4 is a member of the RPP5 multigene family of TIR-NB-LRR genes and confers downy mildew resistance through multiple signalling components. , 2002, The Plant journal : for cell and molecular biology.

[54]  R. Voorrips.  MapChart: software for the graphical presentation of linkage maps and QTLs. , 2002, The Journal of heredity.

[55]  E. Lagudah,et al.  Cytogenetical studies in wheat. XVIII. Gene Yr24 for resistance to stripe rust , 2000 .

[56]  C. Morris,et al.  Catalogue of gene symbols for wheat: 2000 supplement. , 2000 .

[57]  Jonathan D. G. Jones,et al.  Incomplete dominance of tomato Cf genes for resistance to Cladosporium fulvum. , 1994 .

[58]  A. Qayoum,et al.  Virulence, aggressiveness, evolution and distribution of races of Puccinia striiformis (the cause of stripe rust of wheat) in North America, 1968-87 , 1992 .

[59]  S. Tanksley,et al.  Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. , 1991, Nucleic acids research.

[60]  R. Michelmore,et al.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[61]  J. M. Prescott,et al.  Wheat diseases and pests: a guide for field identification , 1986 .

[62]  D. D. Kosambi.  The estimation of map distances from recombination values. , 1943 .