Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation
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Guoli Ji | Chun Liang | Bruce Downie | Man Liu | Xiaohui Wu | Guoli Ji | Xiaohui Wu | Q. Li | C. Liang | A. Hunt | Man Liu | B. Downie | Arthur G. Hunt | Qingshun Q. Li
[1] Q. Li,et al. Alternative polyadenylation and gene expression regulation in plants , 2011, Wiley interdisciplinary reviews. RNA.
[2] G. Micklem,et al. Poly(A) Signals Located near the 5′ End of Genes Are Silenced by a General Mechanism That Prevents Premature 3′-End Processing , 2010, Molecular and Cellular Biology.
[3] Sebastian D. Mackowiak,et al. The Landscape of C. elegans 3′UTRs , 2010, Science.
[4] M. Nalls,et al. Evidence for natural antisense transcript-mediated inhibition of microRNA function , 2010, Genome Biology.
[5] Casey R. Richardson,et al. Analysis of Antisense Expression by Whole Genome Tiling Microarrays and siRNAs Suggests Mis-Annotation of Arabidopsis Orphan Protein-Coding Genes , 2010, PloS one.
[6] G. Simpson,et al. The spen family protein FPA controls alternative cleavage and polyadenylation of RNA. , 2010, Developmental cell.
[7] C. Lister,et al. Targeted 3′ Processing of Antisense Transcripts Triggers Arabidopsis FLC Chromatin Silencing , 2010, Science.
[8] B. Tian,et al. Reprogramming of 3′ Untranslated Regions of mRNAs by Alternative Polyadenylation in Generation of Pluripotent Stem Cells from Different Cell Types , 2009, PloS one.
[9] C. Wahlestedt,et al. Regulatory roles of natural antisense transcripts , 2009, Nature Reviews Molecular Cell Biology.
[10] C. Mayr,et al. Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells , 2009, Cell.
[11] M. Settles,et al. Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array , 2009, BMC Genomics.
[12] B. Tian,et al. Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development , 2009, Proceedings of the National Academy of Sciences.
[13] L. Steinmetz,et al. Bidirectional promoters generate pervasive transcription in yeast , 2009, Nature.
[14] Christophe Malabat,et al. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast , 2009, Nature.
[15] Steven W. Flavell,et al. Genome-Wide Analysis of MEF2 Transcriptional Program Reveals Synaptic Target Genes and Neuronal Activity-Dependent Polyadenylation Site Selection , 2008, Neuron.
[16] Ramanjulu Sunkar,et al. Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. , 2008, Genome research.
[17] S. Baldauf,et al. Evolution of nonstop, no-go and nonsense-mediated mRNA decay and their termination factor-derived components , 2008, BMC Evolutionary Biology.
[18] Q. Li,et al. A Polyadenylation Factor Subunit Implicated in Regulating Oxidative Signaling in Arabidopsis thaliana , 2008, PloS one.
[19] Guoli Ji,et al. Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation , 2008, Nucleic acids research.
[20] Bin Liu,et al. Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs) , 2008, Proceedings of the National Academy of Sciences.
[21] A. Fernie. Faculty Opinions recommendation of Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. , 2008 .
[22] Guennaelle Dieppois,et al. Antisense RNA Stabilization Induces Transcriptional Gene Silencing via Histone Deacetylation in S. cerevisiae , 2007, Cell.
[23] Tanya Z. Berardini,et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation , 2007, Nucleic Acids Res..
[24] L. Maquat,et al. Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. , 2007, Genes & development.
[25] Stefan R. Henz,et al. Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis1[C][W] , 2007, Plant Physiology.
[26] J. Pelletier,et al. Translation of nonSTOP mRNA is repressed post‐initiation in mammalian cells , 2007, The EMBO journal.
[27] A. Reddy. Alternative splicing of pre-messenger RNAs in plants in the genomic era. , 2007, Annual review of plant biology.
[28] T. Inada,et al. Translation of the poly(A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast. , 2007, Genes & development.
[29] Bin Tian,et al. Widespread mRNA polyadenylation events in introns indicate dynamic interplay between polyadenylation and splicing. , 2007, Genome research.
[30] Bin Tian,et al. PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes , 2007, Nucleic Acids Res..
[31] Qingshun Quinn Li,et al. Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures1[w] , 2005, Plant Physiology.
[32] D. Westhead,et al. Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation , 2005, Genome Biology.
[33] G. Phillips,et al. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[34] Bin Tian,et al. A large-scale analysis of mRNA polyadenylation of human and mouse genes , 2005, Nucleic acids research.
[35] Shivakundan Singh Tej,et al. Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing , 2004, Nature Biotechnology.
[36] Shoshi Kikuchi,et al. Antisense transcripts with rice full-length cDNAs , 2003, Genome Biology.
[37] V. Quesada,et al. FY Is an RNA 3′ End-Processing Factor that Interacts with FCA to Control the Arabidopsis Floral Transition , 2003, Cell.
[38] Kathryn A. O’Donnell,et al. An mRNA Surveillance Mechanism That Eliminates Transcripts Lacking Termination Codons , 2002, Science.
[39] Roy Parker,et al. Exosome-Mediated Recognition and Degradation of mRNAs Lacking a Termination Codon , 2002, Science.
[40] C R Cantor,et al. In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[41] T. Hohn,et al. Proximity to the promoter inhibits recognition of cauliflower mosaic virus polyadenylation signal , 1990, Nature.
[42] J. Harms,et al. THE LANDSCAPE OF , 2010 .
[43] M. Schuler. Splice site requirements and switches in plants. , 2008, Current topics in microbiology and immunology.
[44] A. Hunt. Messenger RNA 3' end formation in plants. , 2008, Current topics in microbiology and immunology.
[45] A. Hunt. Messenger RNA 3′-end Formation and the Regulation of Gene Expression , 2007 .
[46] C. Bassett. Regulation of gene expression in plants: the role of transcript structure and processing. , 2007 .
[47] Nick James,et al. NASCArrays: a repository for microarray data generated by NASC's transcriptomics service , 2004, Nucleic Acids Res..