Voxel-Based Diagnosis of Alzheimer's Disease Using Classifier Ensembles

Functional magnetic resonance imaging (fMRI) is one of the most promising noninvasive techniques for early Alzheimer's disease (AD) diagnosis. In this paper, we explore the application of different machine learning techniques to the classification of fMRI data for this purpose. The functional images were first preprocessed using the statistical parametric mapping toolbox to output individual maps of statistically activated voxels. A fast filter was applied afterwards to select voxels commonly activated across demented and nondemented groups. Four feature ranking selection techniques were embedded into a wrapper scheme using an inner–outer loop for the selection of relevant voxels. The wrapper approach was guided by the performance of six pattern recognition models, three of which were ensemble classifiers based on stochastic searches. Final classification performance was assessed from the nested internal and external cross-validation loops taking several voxel sets ordered by importance. Numerical performance was evaluated using statistical tests, and the best combination of voxel selection and classification reached a 97.14% average accuracy. Results repeatedly pointed out Brodmann regions with distinct activation patterns between demented and nondemented profiles, indicating that the machine learning analysis described is a powerful method to detect differences in several brain regions between both groups.

[1]  Concha Bielza,et al.  Peakbin Selection in Mass Spectrometry Data Using a Consensus Approach with Estimation of Distribution Algorithms , 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

[2]  Stephan Bandelow,et al.  Visual impairment in Alzheimer's disease: a critical review. , 2010, Journal of Alzheimer's disease : JAD.

[3]  Catie Chang,et al.  Applications of Multivariate Pattern Classification Analyses in Developmental Neuroimaging of Healthy and Clinical Populations , 2009, Front. Hum. Neurosci..

[4]  Constantin F. Aliferis,et al.  A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis , 2004, Bioinform..

[5]  María Concepción Bielza Lozoya,et al.  Ensemble transcript interaction networks: A case study on Alzheimer's disease , 2012 .

[6]  Alzheimer’s Association 2015 Alzheimer's disease facts and figures , 2015, Alzheimer's & Dementia.

[7]  Daoqiang Zhang,et al.  Multi-modal multi-task learning for joint prediction of multiple regression and classification variables in Alzheimer's disease , 2012, NeuroImage.

[8]  Rubén Armañanzas Consensus Policies to Solve Bioinformatic Problems , 2012 .

[9]  R. Kraftsik,et al.  Primary motor cortex involvement in Alzheimer disease. , 1999, Journal of neuropathology and experimental neurology.

[10]  C. Bielza,et al.  Machine Learning Approach for the Outcome Prediction of Temporal Lobe Epilepsy Surgery , 2013, PloS one.

[11]  Juan José Rodríguez Diez,et al.  Classifier Ensembles with a Random Linear Oracle , 2007, IEEE Transactions on Knowledge and Data Engineering.

[12]  John H. Holland,et al.  Adaptation in Natural and Artificial Systems: An Introductory Analysis with Applications to Biology, Control, and Artificial Intelligence , 1992 .

[13]  Pat Langley,et al.  Estimating Continuous Distributions in Bayesian Classifiers , 1995, UAI.

[14]  Paolo Maria Rossini,et al.  Motor cortex excitability in Alzheimer's disease: A transcranial magnetic stimulation study , 2003, Annals of neurology.

[15]  Ron Kohavi,et al.  Wrappers for Feature Subset Selection , 1997, Artif. Intell..

[16]  Tin Kam Ho,et al.  The Random Subspace Method for Constructing Decision Forests , 1998, IEEE Trans. Pattern Anal. Mach. Intell..

[17]  Marko Robnik-Sikonja,et al.  Overcoming the Myopia of Inductive Learning Algorithms with RELIEFF , 2004, Applied Intelligence.

[18]  Hiroshi Motoda,et al.  Computational Methods of Feature Selection , 2022 .

[19]  Xinghua Lu,et al.  Feature selection for fMRI-based deception detection , 2009, BMC Bioinformatics.

[20]  Ludmila I Kuncheva,et al.  Classifier ensembles for fMRI data analysis: an experiment. , 2010, Magnetic resonance imaging.

[21]  H. Braak,et al.  Neuropathological stageing of Alzheimer-related changes , 2004, Acta Neuropathologica.

[22]  Karl J. Friston,et al.  Statistical parametric mapping (SPM) , 2008, Scholarpedia.

[23]  Marcos Ríos-Lago,et al.  Grapheme-color synesthetes show peculiarities in their emotional brain: cortical and subcortical evidence from VBM analysis of 3D-T1 and DTI data , 2013, Experimental Brain Research.

[24]  Concha Bielza,et al.  Machine Learning in Bioinformatics , 2008, Encyclopedia of Database Systems.

[25]  Uma Shahani,et al.  Reduced Haemodynamic Response in the Ageing Visual Cortex Measured by Absolute fNIRS , 2015, PloS one.

[26]  Pablo Martínez-Martín,et al.  Alzheimer Center Reina Sofia Foundation: fighting the disease and providing overall solutions. , 2010, Journal of Alzheimer's disease : JAD.

[27]  S. Kastner,et al.  Complex organization of human primary motor cortex: a high-resolution fMRI study. , 2008, Journal of neurophysiology.

[28]  Terry M. Peters,et al.  3D statistical neuroanatomical models from 305 MRI volumes , 1993, 1993 IEEE Conference Record Nuclear Science Symposium and Medical Imaging Conference.

[29]  Clifford R Jack,et al.  Alzheimer disease: new concepts on its neurobiology and the clinical role imaging will play. , 2012, Radiology.

[30]  Chih-Jen Lin,et al.  LIBLINEAR: A Library for Large Linear Classification , 2008, J. Mach. Learn. Res..

[31]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[32]  John C. Platt,et al.  Fast training of support vector machines using sequential minimal optimization, advances in kernel methods , 1999 .

[33]  Dimitrios I. Fotiadis,et al.  A six stage approach for the diagnosis of the Alzheimer's disease based on fMRI data , 2010, J. Biomed. Informatics.

[34]  J. Morris,et al.  Functional Brain Imaging of Young, Nondemented, and Demented Older Adults , 2000, Journal of Cognitive Neuroscience.

[35]  Pedro Larrañaga,et al.  Identification of a biomarker panel for colorectal cancer diagnosis , 2012, BMC Cancer.

[36]  Nick C Fox,et al.  Automatic classification of MR scans in Alzheimer's disease. , 2008, Brain : a journal of neurology.

[37]  Andrea Bergmann,et al.  Statistical Parametric Mapping The Analysis Of Functional Brain Images , 2016 .

[38]  Jason Weston,et al.  Gene Selection for Cancer Classification using Support Vector Machines , 2002, Machine Learning.

[39]  F. Vogel,et al.  The limbic system in Alzheimer's disease. A neuropathologic investigation. , 1976, The American journal of pathology.

[40]  Concha Bielza,et al.  Unveiling relevant non-motor Parkinson's disease severity symptoms using a machine learning approach , 2013, Artif. Intell. Medicine.

[41]  Karl J. Friston,et al.  Statistical parametric mapping , 2013 .

[42]  Pedro Larrañaga,et al.  Microarray Analysis of Autoimmune Diseases by Machine Learning Procedures , 2009, IEEE Transactions on Information Technology in Biomedicine.