Strength and similarity guided group-level brain functional network construction for MCI diagnosis

Sparse representation-based brain functional network modeling often results in large inter-subject variability in the network structure. This could reduce the statistical power in group comparison, or even deteriorate the generalization capability of the individualized diagnosis of brain diseases. Although group sparse representation (GSR) can alleviate such a limitation by increasing network similarity across subjects, it could, in turn, fail in providing satisfactory separability between the subjects from different groups (e.g., patients vs. controls). In this study, we propose to integrate individual functional connectivity (FC) information into the GSR-based network construction framework to achieve higher between-group separability while maintaining the merit of within-group consistency. Our method was based on an observation that the subjects from the same group have generally more similar FC patterns than those from different groups. To this end, we propose our new method, namely "strength and similarity guided GSR (SSGSR)", which exploits both BOLD signal temporal correlation-based "low-order" FC (LOFC) and inter-subject LOFC-profile similarity-based "high-order" FC (HOFC) as two priors to jointly guide the GSR-based network modeling. Extensive experimental comparisons are carried out, with the rs-fMRI data from mild cognitive impairment (MCI) subjects and healthy controls, between the proposed algorithm and other state-of-the-art brain network modeling approaches. Individualized MCI identification results show that our method could achieve a balance between the individually consistent brain functional network construction and the adequately maintained inter-group brain functional network distinctions, thus leading to a more accurate classification result. Our method also provides a promising and generalized solution for the future connectome-based individualized diagnosis of brain disease.

[1]  Edward Challis,et al.  Gaussian process classification of Alzheimer's disease and mild cognitive impairment from resting-state fMRI , 2015, NeuroImage.

[2]  Francis Eustache,et al.  The Default Mode Network in Healthy Aging and Alzheimer's Disease , 2011, International journal of Alzheimer's disease.

[3]  S. Rombouts,et al.  Altered resting state networks in mild cognitive impairment and mild Alzheimer's disease: An fMRI study , 2005, Human brain mapping.

[4]  Dinggang Shen,et al.  Automatic cystocele severity grading in transperineal ultrasound by random forest regression , 2017, Pattern Recognit..

[5]  Benjamin J. Shannon,et al.  Molecular, Structural, and Functional Characterization of Alzheimer's Disease: Evidence for a Relationship between Default Activity, Amyloid, and Memory , 2005, The Journal of Neuroscience.

[6]  Mark W. Woolrich,et al.  Resting-state fMRI in the Human Connectome Project , 2013, NeuroImage.

[7]  E. DeLong,et al.  Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. , 1988, Biometrics.

[8]  Olaf Sporns,et al.  Complex network measures of brain connectivity: Uses and interpretations , 2010, NeuroImage.

[9]  Walter H. Backes,et al.  Functional integration of parietal lobe activity in early Alzheimer’s disease , 2012 .

[10]  A. Fagan,et al.  Functional connectivity and graph theory in preclinical Alzheimer's disease , 2014, Neurobiology of Aging.

[11]  Dinggang Shen,et al.  Connectivity strength‐weighted sparse group representation‐based brain network construction for MCI classification , 2017, Human brain mapping.

[12]  R. Petersen,et al.  Mild cognitive impairment , 2006, The Lancet.

[13]  Vince D. Calhoun,et al.  Abnormal functional connectivity of default mode sub-networks in autism spectrum disorder patients , 2010, NeuroImage.

[14]  Dinggang Shen,et al.  Multi‐task diagnosis for autism spectrum disorders using multi‐modality features: A multi‐center study , 2017, Human brain mapping.

[15]  Dewen Hu,et al.  Discriminative analysis of resting-state functional connectivity patterns of schizophrenia using low dimensional embedding of fMRI , 2010, NeuroImage.

[16]  Dinggang Shen,et al.  A novel relational regularization feature selection method for joint regression and classification in AD diagnosis , 2017, Medical Image Anal..

[17]  F. Schmitt,et al.  Synaptic loss in the inferior temporal gyrus in mild cognitive impairment and Alzheimer's disease. , 2011, Journal of Alzheimer's disease : JAD.

[18]  Xingyu Wang,et al.  Aggregation of Sparse Linear Discriminant analyses for Event-Related potential Classification in Brain-Computer Interface , 2014, Int. J. Neural Syst..

[19]  Dinggang Shen,et al.  An efficient radius-incorporated MKL algorithm for Alzheimer's disease prediction , 2015, Pattern Recognit..

[20]  Xingyu Wang,et al.  Fast nonnegative tensor factorization based on accelerated proximal gradient and low-rank approximation , 2016, Neurocomputing.

[21]  Xingyu Wang,et al.  Sparse Bayesian Classification of EEG for Brain–Computer Interface , 2016, IEEE Transactions on Neural Networks and Learning Systems.

[22]  J. Weuve,et al.  2016 Alzheimer's disease facts and figures , 2016 .

[23]  H. Braak,et al.  Staging of Alzheimer disease-associated neurofibrillary pathology using paraffin sections and immunocytochemistry , 2006, Acta Neuropathologica.

[24]  Geoffrey E. Hinton,et al.  Deep Learning , 2015, Nature.

[25]  Tianzi Jiang,et al.  Changes in hippocampal connectivity in the early stages of Alzheimer's disease: Evidence from resting state fMRI , 2006, NeuroImage.

[26]  Harald Hampel,et al.  Diagnostic power of default mode network resting state fMRI in the detection of Alzheimer's disease , 2012, Neurobiology of Aging.

[27]  Daoqiang Zhang,et al.  Robust multi-atlas label propagation by deep sparse representation , 2017, Pattern Recognit..

[28]  Guigang Zhang,et al.  Deep Learning , 2016, Int. J. Semantic Comput..

[29]  Yuan Zhou,et al.  Abnormal Cortical Networks in Mild Cognitive Impairment and Alzheimer's Disease , 2010, PLoS Comput. Biol..

[30]  Xingyu Wang,et al.  Spatial-Temporal Discriminant Analysis for ERP-Based Brain-Computer Interface , 2013, IEEE Transactions on Neural Systems and Rehabilitation Engineering.

[31]  Jie Tian,et al.  Altered topological patterns of brain networks in mild cognitive impairment and Alzheimer's disease: A resting-state fMRI study , 2012, Psychiatry Research: Neuroimaging.

[32]  Lei Wang,et al.  Subject-adaptive Integration of Multiple SICE Brain Networks with Different Sparsity , 2017, Pattern Recognit..

[33]  D. Shen,et al.  Discriminant analysis of longitudinal cortical thickness changes in Alzheimer's disease using dynamic and network features , 2012, Neurobiology of Aging.

[34]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[35]  G. Sandini,et al.  Graph theoretical analysis of magnetoencephalographic functional connectivity in Alzheimer's disease. , 2009, Brain : a journal of neurology.

[36]  M. Raichle,et al.  Resting State Functional Connectivity in Preclinical Alzheimer’s Disease , 2013, Biological Psychiatry.

[37]  Jean-Baptiste Poline,et al.  Brain covariance selection: better individual functional connectivity models using population prior , 2010, NIPS.

[38]  Jieping Ye,et al.  Multi-Task Feature Learning Via Efficient l2, 1-Norm Minimization , 2009, UAI.

[39]  A. Fjell,et al.  Diffusion tensor imaging of white matter degeneration in Alzheimer’s disease and mild cognitive impairment , 2014, Neuroscience.

[40]  Dinggang Shen,et al.  Hybrid High-order Functional Connectivity Networks Using Resting-state Functional MRI for Mild Cognitive Impairment Diagnosis , 2017, Scientific Reports.

[41]  Bin Hu,et al.  Resting-State Whole-Brain Functional Connectivity Networks for MCI Classification Using L2-Regularized Logistic Regression , 2015, IEEE Transactions on NanoBioscience.

[42]  Sterling C. Johnson,et al.  Task-dependent posterior cingulate activation in mild cognitive impairment , 2006, NeuroImage.

[43]  D. Schacter,et al.  The Brain's Default Network , 2008, Annals of the New York Academy of Sciences.

[44]  Xingyu Wang,et al.  Optimizing spatial patterns with sparse filter bands for motor-imagery based brain–computer interface , 2015, Journal of Neuroscience Methods.

[45]  Xingyu Wang,et al.  Temporally Constrained Sparse Group Spatial Patterns for Motor Imagery BCI , 2019, IEEE Transactions on Cybernetics.

[46]  Jing Li,et al.  Learning brain connectivity of Alzheimer's disease by sparse inverse covariance estimation , 2010, NeuroImage.

[47]  Nick C Fox,et al.  Amnestic Mild Cognitive Impairment: Structural MR Imaging Findings Predictive of Conversion to Alzheimer Disease , 2008, American Journal of Neuroradiology.

[48]  Paul M. Thompson,et al.  In vivo mapping of incremental cortical atrophy from incipient to overt Alzheimer’s disease , 2009, Journal of Neurology.

[49]  Dinggang Shen,et al.  Subspace Regularized Sparse Multitask Learning for Multiclass Neurodegenerative Disease Identification , 2016, IEEE Transactions on Biomedical Engineering.

[50]  Yu Zhang,et al.  EEG classification using sparse Bayesian extreme learning machine for brain–computer interface , 2018, Neural Computing and Applications.

[51]  Gang Li,et al.  High‐order resting‐state functional connectivity network for MCI classification , 2016, Human brain mapping.

[52]  H. Benali,et al.  Support vector machine-based classification of Alzheimer’s disease from whole-brain anatomical MRI , 2009, Neuroradiology.

[53]  Dewen Hu,et al.  Unsupervised classification of major depression using functional connectivity MRI , 2014, Human brain mapping.

[54]  Moo K. Chung,et al.  Sparse Brain Network Recovery Under Compressed Sensing , 2011, IEEE Transactions on Medical Imaging.

[55]  E. Bullmore,et al.  Functional Connectivity and Brain Networks in Schizophrenia , 2010, The Journal of Neuroscience.

[56]  Yoav Freund,et al.  The Active Atlas: Combining 3D Anatomical Models with Texture Detectors , 2017, MICCAI.

[57]  Dazhe Zhao,et al.  Sparse shared structure based multi-task learning for MRI based cognitive performance prediction of Alzheimer's disease , 2017, Pattern Recognit..

[58]  C. Stam,et al.  Small-world networks and functional connectivity in Alzheimer's disease. , 2006, Cerebral cortex.

[59]  Thomas E. Nichols,et al.  Anatomically-distinct genetic associations of APOE ɛ4 allele load with regional cortical atrophy in Alzheimer's disease , 2009, NeuroImage.

[60]  Liang Chen,et al.  Multi-modal classification of Alzheimer's disease using nonlinear graph fusion , 2017, Pattern Recognit..

[61]  Yong He,et al.  Disrupted Functional Brain Connectome in Individuals at Risk for Alzheimer's Disease , 2013, Biological Psychiatry.

[62]  H. Sebastian Seung,et al.  Algorithms for Non-negative Matrix Factorization , 2000, NIPS.

[63]  Dinggang Shen,et al.  Sparse temporally dynamic resting-state functional connectivity networks for early MCI identification , 2016, Brain Imaging and Behavior.

[64]  O. Sporns,et al.  Complex brain networks: graph theoretical analysis of structural and functional systems , 2009, Nature Reviews Neuroscience.

[65]  Daoqiang Zhang,et al.  Multimodal classification of Alzheimer's disease and mild cognitive impairment , 2011, NeuroImage.

[66]  Daoqiang Zhang,et al.  Group-constrained sparse fMRI connectivity modeling for mild cognitive impairment identification , 2013, Brain Structure and Function.

[67]  S. Rombouts,et al.  Loss of ‘Small-World’ Networks in Alzheimer's Disease: Graph Analysis of fMRI Resting-State Functional Connectivity , 2010, PloS one.

[68]  R. Tibshirani Regression Shrinkage and Selection via the Lasso , 1996 .

[69]  M. Fox,et al.  Frontiers in Systems Neuroscience Systems Neuroscience , 2022 .

[70]  Olaf Sporns,et al.  THE HUMAN CONNECTOME: A COMPLEX NETWORK , 2011, Schizophrenia Research.

[71]  Lei Wang,et al.  Exploring multifractal‐based features for mild Alzheimer's disease classification , 2016, Magnetic resonance in medicine.

[72]  Dinggang Shen,et al.  Supervised Discriminative Group Sparse Representation for Mild Cognitive Impairment Diagnosis , 2015, Neuroinformatics.