Microbiota and Host Nutrition across Plant and Animal Kingdoms.
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R. Knight | R. Ley | A. Mchardy | Antonio Gonzalez | R. Garrido-Oter | P. Schulze-Lefert | G. Ackermann | S. Hacquard | J. L. Dangl | S. Spaepen | S. Lebeis | J. Dangl | R. Knight
[1] Y. Jaillais,et al. The molecular circuitry of brassinosteroid signaling. , 2015, The New phytologist.
[2] Rob Knight,et al. The microbiome of uncontacted Amerindians , 2015, Science Advances.
[3] David A. Mills,et al. The Soil Microbiome Influences Grapevine-Associated Microbiota , 2015, mBio.
[4] Alice C. McHardy,et al. Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley , 2015, Cell host & microbe.
[5] C. Schadt,et al. Towards a holistic understanding of the beneficial interactions across the Populus microbiome. , 2015, The New phytologist.
[6] J. Kirkegaard,et al. Evolution of bacterial communities in the wheat crop rhizosphere. , 2015, Environmental microbiology.
[7] N. Weyens,et al. Bacterial seed endophytes: genera, vertical transmission and interaction with plants , 2015 .
[8] Cameron Johnson,et al. Structure, variation, and assembly of the root-associated microbiomes of rice , 2015, Proceedings of the National Academy of Sciences.
[9] K. Svenson,et al. Diet dominates host genotype in shaping the murine gut microbiota. , 2015, Cell host & microbe.
[10] René Augustin,et al. Bacteria–bacteria interactions within the microbiota of the ancestral metazoan Hydra contribute to fungal resistance , 2014, The ISME Journal.
[11] M. Briand,et al. Emergence Shapes the Structure of the Seed Microbiota , 2014, Applied and Environmental Microbiology.
[12] Angela C. Poole,et al. Human Genetics Shape the Gut Microbiome , 2014, Cell.
[13] H. Ochman,et al. Rapid changes in the gut microbiome during human evolution , 2014, Proceedings of the National Academy of Sciences.
[14] Angela C. Poole,et al. Selection on soil microbiomes reveals reproducible impacts on plant function , 2014, The ISME Journal.
[15] P. Shah,et al. Gut microbiota of the very-low-birth-weight infant , 2014, Pediatric Research.
[16] William E. Stutz,et al. Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity , 2014, Molecular ecology.
[17] Alice C. McHardy,et al. Microbial genome-enabled insights into plant–microorganism interactions , 2014, Nature Reviews Genetics.
[18] Y. Hadar,et al. Niche and host-associated functional signatures of the root surface microbiome , 2014, Nature Communications.
[19] E. Segal,et al. Artificial sweeteners induce glucose intolerance by altering the gut microbiota , 2014, Nature.
[20] Daniel Muller,et al. Root microbiome relates to plant host evolution in maize and other Poaceae. , 2014, Environmental microbiology.
[21] L. Ursell,et al. Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations , 2014, mBio.
[22] E. Kemen. Microbe-microbe interactions determine oomycete and fungal host colonization. , 2014, Current opinion in plant biology.
[23] Eric J Alm,et al. Host lifestyle affects human microbiota on daily timescales , 2014, Genome Biology.
[24] S. Tringe,et al. Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative. , 2014, Ecology letters.
[25] L. Herrera-Estrella,et al. Phosphate nutrition: improving low-phosphate tolerance in crops. , 2014, Annual review of plant biology.
[26] E. Kuramae,et al. Taxonomical and functional microbial community selection in soybean rhizosphere , 2014, The ISME Journal.
[27] J. Faith,et al. Identifying Gut Microbe–Host Phenotype Relationships Using Combinatorial Communities in Gnotobiotic Mice , 2014, Science Translational Medicine.
[28] P. Schulze-Lefert,et al. Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives , 2013, Proceedings of the National Academy of Sciences.
[29] Lawrence A. David,et al. Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.
[30] Rob Knight,et al. EMPeror: a tool for visualizing high-throughput microbial community data , 2013, GigaScience.
[31] J. Vivanco,et al. Rhizosphere microbiome assemblage is affected by plant development , 2013, The ISME Journal.
[32] Z. Ma,et al. Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota , 2013, The ISME Journal.
[33] C. Schadt,et al. A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees , 2013, PloS one.
[34] M. Icaza-Chávez,et al. Gut microbiota in health and disease , 2013 .
[35] Jun Wang,et al. Distinct antimicrobial peptide expression determines host species-specific bacterial associations , 2013, Proceedings of the National Academy of Sciences.
[36] Mathieu Almeida,et al. Dietary intervention impact on gut microbial gene richness , 2013, Nature.
[37] J. Clemente,et al. The Long-Term Stability of the Human Gut Microbiota , 2013 .
[38] P. Poole,et al. The plant microbiome , 2013, Genome Biology.
[39] Gabriel Núñez,et al. Control of pathogens and pathobionts by the gut microbiota , 2013, Nature Immunology.
[40] P. Schulze-Lefert,et al. Structure and functions of the bacterial microbiota of plants. , 2013, Annual review of plant biology.
[41] Se Jin Song,et al. Cohabiting family members share microbiota with one another and with their dogs , 2013, eLife.
[42] S. Tringe,et al. Diversity and heritability of the maize rhizosphere microbiome under field conditions , 2013, Proceedings of the National Academy of Sciences.
[43] T. Schmidt,et al. Shallow breathing: bacterial life at low O2 , 2013, Nature Reviews Microbiology.
[44] A. Knoll,et al. Animals in a bacterial world, a new imperative for the life sciences , 2013, Proceedings of the National Academy of Sciences.
[45] Eleazar Eskin,et al. Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. , 2013, Cell metabolism.
[46] Hélène Touzet,et al. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data , 2012, Bioinform..
[47] S. Tims,et al. Microbiota conservation and BMI signatures in adult monozygotic twins , 2012, The ISME Journal.
[48] Alison S. Waller,et al. Genomic variation landscape of the human gut microbiome , 2012, Nature.
[49] C. Pieterse,et al. Hormonal modulation of plant immunity. , 2012, Annual review of cell and developmental biology.
[50] V. Tremaroli,et al. Functional interactions between the gut microbiota and host metabolism , 2012, Nature.
[51] Robert C. Edgar,et al. Defining the core Arabidopsis thaliana root microbiome , 2012, Nature.
[52] R. Amann,et al. Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota , 2012, Nature.
[53] C. Pieterse,et al. The rhizosphere microbiome and plant health. , 2012, Trends in plant science.
[54] Curtis Huttenhower,et al. Microbial Co-occurrence Relationships in the Human Microbiome , 2012, PLoS Comput. Biol..
[55] Robert W. Williams,et al. Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits , 2012, PloS one.
[56] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[57] J. Clemente,et al. Human gut microbiome viewed across age and geography , 2012, Nature.
[58] Harry J Flint,et al. The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic–anoxic interphases , 2012, The ISME Journal.
[59] C. V. Mering,et al. Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice , 2011, The ISME Journal.
[60] Eric P. Nawrocki,et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea , 2011, The ISME Journal.
[61] Howard C. Tenenbaum,et al. Bacterial biogeography of the human digestive tract , 2011, Scientific reports.
[62] F. Bushman,et al. Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes , 2011, Science.
[63] J. Walter,et al. The human gut microbiome: ecology and recent evolutionary changes. , 2011, Annual review of microbiology.
[64] P. Schulze-Lefert,et al. NLR functions in plant and animal immune systems: so far and yet so close , 2011, Nature Immunology.
[65] W. Verstraete,et al. The host selects mucosal and luminal associations of coevolved gut microorganisms: a novel concept. , 2011, FEMS microbiology reviews.
[66] P. Bakker,et al. Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria , 2011, Science.
[67] J. Clemente,et al. Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans , 2011, Science.
[68] Ruth Ley,et al. Unravelling the effects of the environment and host genotype on the gut microbiome , 2011, Nature Reviews Microbiology.
[69] J. Faith,et al. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice , 2011, Proceedings of the National Academy of Sciences.
[70] P. Rosenstiel,et al. Nod2 is essential for temporal development of intestinal microbial communities , 2011, Gut.
[71] P. Bakker,et al. Effects of jasmonic acid, ethylene, and salicylic acid signaling on the rhizosphere bacterial community of Arabidopsis thaliana. , 2011, Molecular plant-microbe interactions : MPMI.
[72] P. Hugenholtz,et al. Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities , 2010, PLoS biology.
[73] Min Zhang,et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors , 2010, Proceedings of the National Academy of Sciences.
[74] Lena Holm,et al. Bacteria Penetrate the Inner Mucus Layer before Inflammation in the Dextran Sulfate Colitis Model , 2010, PloS one.
[75] W. D. de Vos,et al. Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface. , 2010, Current opinion in biotechnology.
[76] L. T. Angenent,et al. Succession of microbial consortia in the developing infant gut microbiome , 2010, Proceedings of the National Academy of Sciences.
[77] R. Knight,et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns , 2010, Proceedings of the National Academy of Sciences.
[78] R. Knight,et al. Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil , 2010 .
[79] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[80] Bernard Henrissat,et al. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins , 2010, Proceedings of the National Academy of Sciences.
[81] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[82] N. Stenseth,et al. Convergent temporal dynamics of the human infant gut microbiota , 2010, The ISME Journal.
[83] A. Iwasaki,et al. Regulation of Adaptive Immunity by the Innate Immune System , 2010, Science.
[84] J. Rousk,et al. Adaptation of soil microbial communities to temperature: comparison of fungi and bacteria in a laboratory experiment , 2009 .
[85] M. Blaser,et al. What are the consequences of the disappearing human microbiota? , 2009, Nature Reviews Microbiology.
[86] Harry J Flint,et al. The role of pH in determining the species composition of the human colonic microbiota. , 2009, Environmental microbiology.
[87] E. Boyd,et al. Sialic Acid Catabolism Confers a Competitive Advantage to Pathogenic Vibrio cholerae in the Mouse Intestine , 2009, Infection and Immunity.
[88] F. Maathuis,et al. Physiological functions of mineral macronutrients. , 2009, Current opinion in plant biology.
[89] T. Boller,et al. A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. , 2009, Annual review of plant biology.
[90] T. Mitsuoka. Intestinal flora and aging. , 2009, Nutrition reviews.
[91] K. Nelson,et al. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases , 2009, Proceedings of the National Academy of Sciences.
[92] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[93] R. Knight,et al. Worlds within worlds: evolution of the vertebrate gut microbiota , 2008, Nature Reviews Microbiology.
[94] A. Velcich,et al. The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria , 2008, Proceedings of the National Academy of Sciences.
[95] Rustam I. Aminov,et al. Predominant Role of Host Genetics in Controlling the Composition of Gut Microbiota , 2008, PloS one.
[96] R. Knight,et al. Evolution of Mammals and Their Gut Microbes , 2008, Science.
[97] S. Spoel,et al. Making sense of hormone crosstalk during plant immune responses. , 2008, Cell host & microbe.
[98] H. Lambers,et al. Plant nutrient-acquisition strategies change with soil age. , 2008, Trends in ecology & evolution.
[99] E. Bååth,et al. Comparison of factors limiting bacterial growth in different soils , 2007 .
[100] Daniel B. DiGiulio,et al. Development of the Human Infant Intestinal Microbiota , 2007, PLoS biology.
[101] H. Flint,et al. Selective colonization of insoluble substrates by human faecal bacteria. , 2007, Environmental microbiology.
[102] Jonathan D. G. Jones,et al. The plant immune system , 2006, Nature.
[103] J. Meijerink,et al. Muc2-deficient mice spontaneously develop colitis, indicating that MUC2 is critical for colonic protection. , 2006, Gastroenterology.
[104] G. Stacey,et al. Effects of Endogenous Salicylic Acid on Nodulation in the Model Legumes Lotus japonicus and Medicago truncatula1[W] , 2006, Plant Physiology.
[105] Jo Handelsman,et al. Toward a Census of Bacteria in Soil , 2006, PLoS Comput. Biol..
[106] M. Pop,et al. Metagenomic Analysis of the Human Distal Gut Microbiome , 2006, Science.
[107] E. Quigley,et al. Intestinal Bacterial Overgrowth : Roles of Antibiotics , rebiotics , and Probiotics , 2022 .
[108] R. B. Jackson,et al. The diversity and biogeography of soil bacterial communities. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[109] R. Knight,et al. UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.
[110] H. Lochs,et al. Spatial Organization and Composition of the Mucosal Flora in Patients with Inflammatory Bowel Disease , 2005, Journal of Clinical Microbiology.
[111] E. Purdom,et al. Diversity of the Human Intestinal Microbial Flora , 2005, Science.
[112] W. Liesack,et al. Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. , 2005, Environmental microbiology.
[113] H. Blottière,et al. Butyrate specifically modulates MUC gene expression in intestinal epithelial goblet cells deprived of glucose. , 2004, American journal of physiology. Gastrointestinal and liver physiology.
[114] Christophe,et al. Rhizodeposition of organic C by plants: mechanisms and controls , 2003 .
[115] D. Meyer,et al. Nondigestible Oligo- and Polysaccharides (Dietary Fiber): Their Physiology and Role in Human Health and Food. , 2002, Comprehensive reviews in food science and food safety.
[116] Thomas P. Curtis,et al. Estimating prokaryotic diversity and its limits , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[117] Juan A Ocampo,et al. Regulation of the plant defence response in arbuscular mycorrhizal symbiosis. , 2002, Journal of experimental botany.
[118] C. Stevens,et al. Contributions of microbes in vertebrate gastrointestinal tract to production and conservation of nutrients. , 1998, Physiological reviews.
[119] L. Morelli,et al. Human milk and infant intestinal mucosal glycans guide succession of the neonatal intestinal microbiota , 2015, Pediatric Research.
[120] M. Grube,et al. Bacterial networks and co-occurrence relationships in the lettuce root microbiota. , 2015, Environmental microbiology.
[121] S. Tsabouri,et al. Modulation of gut microbiota downregulates the development of food allergy in infancy. , 2014, Allergologia et immunopathologia.
[122] L. Hauberg-Lotte,et al. Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis. , 2012, Molecular plant-microbe interactions : MPMI.
[123] E. Mittge,et al. Evidence for a core gut microbiota in the zebrafish , 2011, The ISME Journal.
[124] Benoît Jaillard,et al. Origins of root-mediated pH changes in the rhizosphere and their responses to environmental constraints: A review , 2004, Plant and Soil.
[125] B. M. Gardener,et al. Microbial populations responsible for specific soil suppressiveness to plant pathogens. , 2002, Annual review of phytopathology.
[126] C. Pieterse,et al. Systemic resistance induced by rhizosphere bacteria. , 1998, Annual review of phytopathology.
[127] R. Osawa,et al. Microbiological studies of the intestinal microflora of the Koala, Phascolarctos cinereus. II. Pap, a special maternal faeces consumed by juvenile koalas , 1993 .
[128] L C Hoskins,et al. Mucin degradation in human colon ecosystems. Evidence for the existence and role of bacterial subpopulations producing glycosidases as extracellular enzymes. , 1981, The Journal of clinical investigation.