Genomic insights into tuberculosis
暂无分享,去创建一个
[1] C. Nusbaum,et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. , 2008, Genome research.
[2] Stefan Niemann,et al. High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography , 2008, PLoS biology.
[3] W. Doolittle,et al. Lateral gene transfer and the origins of prokaryotic groups. , 2003, Annual review of genetics.
[4] I. Comas,et al. A role for systems epidemiology in tuberculosis research. , 2011, Trends in microbiology.
[5] N. Ahmed,et al. Tuberculosis in seals caused by a novel member of the Mycobacterium tuberculosis complex: Mycobacterium pinnipedii sp. nov. , 2003, International journal of systematic and evolutionary microbiology.
[6] M. Moroni,et al. Spoligotyping andMycobacterium tuberculosis , 2005 .
[7] Stephen D. Bentley,et al. Microevolution of extensively drug-resistant tuberculosis in Russia. , 2012, Genome research.
[8] Marcel A. Behr,et al. Mycobacterium avium in the Postgenomic Era , 2007, Clinical Microbiology Reviews.
[9] Amit Singh,et al. Mycobacterium tuberculosis WhiB3 Maintains Redox Homeostasis by Regulating Virulence Lipid Anabolism to Modulate Macrophage Response , 2009, PLoS pathogens.
[10] Timothy P. L. Smith,et al. Reducing assembly complexity of microbial genomes with single-molecule sequencing , 2013, Genome Biology.
[11] S. Gagneux,et al. Does M. tuberculosis genomic diversity explain disease diversity? , 2010, Drug discovery today. Disease mechanisms.
[12] Thomas R. Ioerger,et al. Genome Analysis of Multi- and Extensively-Drug-Resistant Tuberculosis from KwaZulu-Natal, South Africa , 2009, PloS one.
[13] G. Migliori,et al. First tuberculosis cases in Italy resistant to all tested drugs. , 2007, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[14] S. Fortune. The surprising diversity of Mycobacterium tuberculosis: change you can believe in. , 2012, The Journal of infectious diseases.
[15] Julian Parkhill,et al. The complete genome sequence of Mycobacterium bovis , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[16] B. Rothschild,et al. Hyperdisease in the late Pleistocene: validation of an early 20th century hypothesis , 2006, Naturwissenschaften.
[17] C. Roberts,et al. Genotype of a historic strain of Mycobacterium tuberculosis , 2012, Proceedings of the National Academy of Sciences.
[18] M. Behr. Mycobacterium du jour: what's on tomorrow's menu? , 2008, Microbes and infection.
[19] Zimmerman Mr. Pulmonary and osseous tuberculosis in an Egyptian mummy. , 1979 .
[20] Mi‐jeong Kim,et al. Foamy macrophages and the progression of the human tuberculosis granuloma , 2009, Nature Immunology.
[21] M. Daffé,et al. Clinical characteristics of the smooth tubercle bacilli 'Mycobacterium canettii' infection suggest the existence of an environmental reservoir. , 2011, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[22] Stefan Niemann,et al. Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes , 2011 .
[23] P. Bennett. Genome plasticity: insertion sequence elements, transposons and integrons, and DNA rearrangement. , 2004, Methods in molecular biology.
[24] C. Roberts,et al. The Bioarchaeology of Tuberculosis: A Global View on a Reemerging Disease , 2003 .
[25] James H. Bullard,et al. A hybrid approach for the automated finishing of bacterial genomes , 2012, Nature Biotechnology.
[26] R. Brosch,et al. Ancient Origin and Gene Mosaicism of the Progenitor of Mycobacterium tuberculosis , 2005, PLoS pathogens.
[27] Stanislas Leibler,et al. Dynamic Persistence of Antibiotic-Stressed Mycobacteria , 2013, Science.
[28] Y. Balabanova,et al. Drug-resistant tuberculosis, clinical virulence, and the dominance of the Beijing strain family in Russia. , 2005, JAMA.
[29] K. Derbyshire,et al. IS6110, a Mycobacterium tuberculosis Complex-Specific Insertion Sequence, Is Also Present in the Genome of Mycobacterium smegmatis, Suggestive of Lateral Gene Transfer among Mycobacterial Species , 2008, Journal of bacteriology.
[30] W. Bishai,et al. Mechanisms of latency in Mycobacterium tuberculosis. , 1998, Trends in microbiology.
[31] Barun Mathema,et al. Molecular Epidemiology of Tuberculosis: Current Insights , 2006, Clinical Microbiology Reviews.
[32] Allen D. Delaney,et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing , 2007, Nature Methods.
[33] J. Butterton,et al. Spontaneous tandem amplification and deletion of the Shiga toxin operon in Shigella dysenteriae 1 , 1999, Molecular microbiology.
[34] A. Nerlich,et al. Molecular study on human tuberculosis in three geographically distinct and time delineated populations from ancient Egypt , 2003, Epidemiology and Infection.
[35] D. Andersson,et al. Dynamics of Antibiotic Resistant Mycobacterium tuberculosis during Long-Term Infection and Antibiotic Treatment , 2011, PloS one.
[36] G. Schoolnik,et al. Comparative genomics of BCG vaccines by whole-genome DNA microarray. , 1999, Science.
[37] Clifton E. Barry,et al. DnaE2 Polymerase Contributes to In Vivo Survival and the Emergence of Drug Resistance in Mycobacterium tuberculosis , 2003, Cell.
[38] S. Cole,et al. Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays , 1999, Molecular microbiology.
[39] D. van Soolingen,et al. DNA fingerprinting of Mycobacterium tuberculosis: from phage typing to whole-genome sequencing. , 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[40] P. Deschavanne,et al. Horizontally acquired genomic islands in the tubercle bacilli. , 2008, Trends in microbiology.
[41] T. Whittam,et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[42] R. Barrangou,et al. CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes , 2007, Science.
[43] R M Warren,et al. IS6110-Mediated Deletion Polymorphism in the Direct Repeat Region of Clinical Isolates of Mycobacterium tuberculosis , 2003, Journal of bacteriology.
[44] I. Smith,et al. Cholesterol metabolism increases the metabolic pool of propionate in Mycobacterium tuberculosis. , 2009, Biochemistry.
[45] Marcus W Feldman,et al. Stable association between strains of Mycobacterium tuberculosis and their human host populations. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[46] S. Gagneux. Host–pathogen coevolution in human tuberculosis , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.
[47] C. D. Long,et al. The Competitive Cost of Antibiotic Resistance in Mycobacterium tuberculosis , 2006, Science.
[48] Z. Udwadia,et al. Totally drug-resistant tuberculosis (TDR-TB) in India: every dark cloud has a silver lining , 2012, Journal of Epidemiology & Community Health.
[49] H. Swerdlow,et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers , 2012, BMC Genomics.
[50] D. Minnikin,et al. Detection and Molecular Characterization of 9000-Year-Old Mycobacterium tuberculosis from a Neolithic Settlement in the Eastern Mediterranean , 2008, PloS one.
[51] D. Russell,et al. Mycobacterium tuberculosis and the environment within the phagosome , 2007, Immunological reviews.
[52] I. Miklós,et al. Dynamics of Genome Rearrangement in Bacterial Populations , 2008, PLoS genetics.
[53] Wolfgang M Prodinger,et al. Characterization of Mycobacterium caprae Isolates from Europe by Mycobacterial Interspersed Repetitive Unit Genotyping , 2005, Journal of Clinical Microbiology.
[54] B. Ludes,et al. Identification of Mycobacterium DNA in an Egyptian Pott's disease of 5,400 years old. , 1998, Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie.
[55] Parissa Farnia,et al. Emergence of new forms of totally drug-resistant tuberculosis bacilli: super extensively drug-resistant tuberculosis or totally drug-resistant strains in iran. , 2009, Chest.
[56] K. Holt,et al. Out-of-Africa migration and Neolithic co-expansion of Mycobacterium tuberculosis with modern humans , 2013, Nature Genetics.
[57] R. Chaisson,et al. Tuberculosis drug resistance: a global threat. , 2003, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[58] W. Stead,et al. The history of tuberculosis as a global epidemic. , 1993, The Medical clinics of North America.
[59] J. Mittler,et al. A replication clock for Mycobacterium tuberculosis , 2009, Nature Medicine.
[60] Yves Van de Peer,et al. The Mycobacterium tuberculosis regulatory network and hypoxia , 2013, Nature.
[61] Aaron L. Halpern,et al. Consensus generation and variant detection by Celera Assembler , 2008, Bioinform..
[62] J. McInerney,et al. Fatty acid biosynthesis in Mycobacterium tuberculosis: Lateral gene transfer, adaptive evolution, and gene duplication , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[63] Z. F. Zainuddin,et al. Characterization of a Mycobacterium tuberculosis insertion sequence belonging to the IS3 family , 1990, Molecular microbiology.
[64] Markus R. Wenk,et al. Triacylglycerol Utilization Is Required for Regrowth of In Vitro Hypoxic Nonreplicating Mycobacterium bovis Bacillus Calmette-Guerin , 2009, Journal of bacteriology.
[65] M. Zimmerman. Pulmonary and osseous tuberculosis in an Egyptian mummy. , 1979, Bulletin of the New York Academy of Medicine.
[66] S. Niemann,et al. The Beijing genotype is a major cause of drug-resistant tuberculosis in Kazakhstan. , 2005, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.
[67] Beatriz Galán,et al. Characterization of the KstR-dependent promoter of the gene for the first step of the cholesterol degradative pathway in Mycobacterium smegmatis. , 2011, Microbiology.
[68] M. Reed,et al. Massive Gene Duplication Event among Clinical Isolates of the Mycobacterium tuberculosis W/Beijing Family , 2010, Journal of bacteriology.
[69] Gilles Vergnaud,et al. Molecular characteristics of "Mycobacterium canettii" the smooth Mycobacterium tuberculosis bacilli. , 2010, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[70] Daniel R Zerbino,et al. Using the Velvet de novo Assembler for Short‐Read Sequencing Technologies , 2010, Current protocols in bioinformatics.
[71] A. Nerlich,et al. Molecular history of tuberculosis from ancient mummies and skeletons , 2007 .
[72] M. Chase,et al. Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection , 2011, Nature Genetics.
[73] D. Russell. The evolutionary pressures that have molded Mycobacterium tuberculosis into an infectious adjuvant. , 2013, Current opinion in microbiology.
[74] D. Cousins,et al. Tuberculosis in imported hyrax (Procavia capensis) caused by an unusual variant belonging to the Mycobacterium tuberculosis complex. , 1994, Veterinary microbiology.
[75] S. Gillespie,et al. Physiological Cost of Rifampin Resistance Induced In Vitro in Mycobacterium tuberculosis , 1999, Antimicrobial Agents and Chemotherapy.
[76] U. Alon. Network motifs: theory and experimental approaches , 2007, Nature Reviews Genetics.
[77] P. V. van Helden,et al. Novel Mycobacterium tuberculosis Complex Pathogen, M. mungi , 2010, Emerging infectious diseases.
[78] Jun Yu,et al. BIGrat: a repeat resolver for pyrosequencing-based re-sequencing with Newbler , 2012, BMC Research Notes.
[79] A. Nerlich,et al. Molecular analysis of skeletal tuberculosis in an ancient Egyptian population. , 2001, Journal of medical microbiology.
[80] P. Bourgine,et al. Topological and causal structure of the yeast transcriptional regulatory network , 2002, Nature Genetics.
[81] M. Elowitz,et al. Functional Roles of Pulsing in Genetic Circuits , 2013, Science.
[82] V. Formicola,et al. Evidence of spinal tuberculosis at the beginning of the fourth millennium BC from Arene Candide cave (Liguria, Italy). , 1987, American journal of physical anthropology.
[83] M. Drancourt,et al. Imported extensively drug-resistant Mycobacterium tuberculosis Beijing genotype, Marseilles, France, 2011. , 2011, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[84] E. Böttger,et al. Fitness Cost of Chromosomal Drug Resistance-Conferring Mutations , 2002, Antimicrobial Agents and Chemotherapy.
[85] S. Cole,et al. Effect of katG Mutations on the Virulence of Mycobacterium tuberculosis and the Implication for Transmission in Humans , 2002, Infection and Immunity.
[86] E. Muñoz-Elías,et al. Mycobacterium tuberculosis isocitrate lyases 1 and 2 are jointly required for in vivo growth and virulence , 2005, Nature Medicine.
[87] H. Ochman,et al. Lateral gene transfer and the nature of bacterial innovation , 2000, Nature.
[88] A. Aufderheide,et al. Identification of Mycobacterium tuberculosis DNA in a pre-Columbian Peruvian mummy. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[89] Markus Sköld,et al. Tuberculosis and HIV Co-Infection , 2012, PLoS pathogens.
[90] M. Behr,et al. Mycobacterium avium subsp. paratuberculosis and M. avium subsp. avium Are Independently Evolved Pathogenic Clones of a Much Broader Group of M. avium Organisms , 2008, Journal of bacteriology.
[91] Falk Hildebrand,et al. Origin, Spread and Demography of the Mycobacterium tuberculosis Complex , 2008, PLoS pathogens.
[92] P. V. van Helden,et al. IS6110-Mediated Deletion Polymorphism in Isogenic Strains of Mycobacterium tuberculosis , 2004, Journal of Clinical Microbiology.
[93] Julian Parkhill,et al. Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. , 2008, Genome research.
[94] P. V. van Helden,et al. Drug-resistant tuberculosis epidemic in the Western Cape driven by a virulent Beijing genotype strain. , 2010, The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.
[95] J. Collins,et al. Role of reactive oxygen species in antibiotic action and resistance. , 2009, Current opinion in microbiology.
[96] J. Galagan,et al. Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved , 2010, Nature Genetics.
[97] Midori Kato-Maeda,et al. Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[98] J. Emile,et al. Foamy Macrophages from Tuberculous Patients' Granulomas Constitute a Nutrient-Rich Reservoir for M. tuberculosis Persistence , 2008, PLoS pathogens.
[99] A. Regev,et al. Impulse Control: Temporal Dynamics in Gene Transcription , 2011, Cell.
[100] C. Buchrieser,et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[101] T. M. Daniel,et al. Old Testament biblical references to tuberculosis. , 1999, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[102] E. Willery,et al. Genome analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of the etiologic agent of tuberculosis , 2013, Nature Genetics.
[103] M. Moroni,et al. Spoligotyping and Mycobacterium tuberculosis , 2005, Emerging infectious diseases.
[104] Sebastien Gagneux,et al. Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. , 2007, The Lancet. Infectious diseases.
[105] U. Schaible,et al. The Granuloma in Tuberculosis: Dynamics of a Host–Pathogen Collusion , 2012, Front. Immun..
[106] J. Musser,et al. Negligible genetic diversity of mycobacterium tuberculosis host immune system protein targets: evidence of limited selective pressure. , 2000, Genetics.
[107] B. Rothschild,et al. Did ice-age bovids spread tuberculosis? , 2006, Naturwissenschaften.
[108] J. Sacchettini,et al. The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa , 2010, BMC Genomics.
[109] M. Behr,et al. The rise and fall of the Mycobacterium tuberculosis genome. , 2011, Trends in microbiology.
[110] David G. Russell,et al. Mycobacterium tuberculosis: here today, and here tomorrow , 2001, Nature Reviews Molecular Cell Biology.
[111] B. Robertson,et al. Comparison of Mycobacterium Tuberculosis Genomes Reveals Frequent Deletions in a 20 kb Variable Region in Clinical Isolates , 2000, Yeast.
[112] Nalin Rastogi,et al. Characterization of Mycobacterium tuberculosis Complex DNAs from Egyptian Mummies by Spoligotyping , 2003, Journal of Clinical Microbiology.
[113] B. Wang,et al. Outbreak of tuberculosis in a 2000-year-old Chinese population. , 2003, Kansenshogaku zasshi. The Journal of the Japanese Association for Infectious Diseases.
[114] M. DePristo,et al. Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis. , 2010, Molecular cell.
[115] Floyd E. Romesberg,et al. Induction and Inhibition of Ciprofloxacin Resistance-Conferring Mutations in Hypermutator Bacteria , 2006, Antimicrobial Agents and Chemotherapy.
[116] P. V. van Helden,et al. Putative Compensatory Mutations in the rpoC Gene of Rifampin-Resistant Mycobacterium tuberculosis Are Associated with Ongoing Transmission , 2012, Antimicrobial Agents and Chemotherapy.
[117] E. Rocha,et al. After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection. , 2012, Genome research.
[118] Alicia Aranaz,et al. Genomic deletions suggest a phylogeny for the Mycobacterium tuberculosis complex. , 2002, The Journal of infectious diseases.
[119] David G. Russell,et al. Mycobacterium and the coat of many lipids , 2002, The Journal of cell biology.
[120] Nalin Rastogi,et al. Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing of Mycobacterium tuberculosis , 2006, Journal of Clinical Microbiology.
[121] Sharon L. Kendall,et al. Cholesterol utilization in mycobacteria is controlled by two TetR-type transcriptional regulators: kstR and kstR2 , 2010, Microbiology.
[122] L. Marraffini,et al. CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA , 2008, Science.
[123] D. Russell. Mycobacterium tuberculosis and the intimate discourse of a chronic infection , 2011, Immunological reviews.
[124] C. Locht,et al. Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area , 2003, Molecular microbiology.
[125] Stefan Niemann,et al. Variable host-pathogen compatibility in Mycobacterium tuberculosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[126] S. Gordon,et al. Mycobacterial Lineages Causing Pulmonary and Extrapulmonary Tuberculosis, Ethiopia , 2013, Emerging infectious diseases.
[127] D. van Soolingen,et al. The re-emergence of tuberculosis: what have we learnt from molecular epidemiology? , 2013, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[128] Marisa Klopper,et al. Emergence and Spread of Extensively and Totally Drug-Resistant Tuberculosis, South Africa , 2013, Emerging infectious diseases.
[129] Guido N. J. Tytgat,et al. Genomic Analysis Reveals Variation between Mycobacterium tuberculosis H37Rv and the Attenuated M. tuberculosis H37Ra Strain , 1999 .
[130] H. Meller,et al. Rib lesions in skeletons from early neolithic sites in Central Germany: on the trail of tuberculosis at the onset of agriculture. , 2012, American journal of physical anthropology.
[131] Q. Gao,et al. Phylogeny of Mycobacterium tuberculosis Beijing Strains Constructed from Polymorphisms in Genes Involved in DNA Replication, Recombination and Repair , 2011, PloS one.
[132] P. V. van Helden,et al. Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis. , 2014, The Journal of antimicrobial chemotherapy.
[133] P. Deschavanne,et al. Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli. , 2007, Molecular biology and evolution.
[134] C. Boesch,et al. Novel Mycobacterium tuberculosis Complex Isolate from a Wild Chimpanzee , 2013, Emerging infectious diseases.
[135] R. Sharan,et al. Protein networks in disease. , 2008, Genome research.
[136] G. Besra,et al. A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: characterization of an exceptional isolate from Africa. , 1997, International journal of systematic bacteriology.
[137] Omar E. Cornejo,et al. The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations , 2013, PLoS pathogens.
[138] Yang Liu,et al. Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages , 2003, The Journal of experimental medicine.
[139] Irina Kolesnikova,et al. A Thiolase of Mycobacterium tuberculosis Is Required for Virulence and Production of Androstenedione and Androstadienedione from Cholesterol , 2009, Infection and Immunity.
[140] Weidong Tian,et al. Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients. , 2012, The Journal of infectious diseases.
[141] K. Dooley,et al. Tuberculosis and diabetes mellitus: convergence of two epidemics. , 2009, The Lancet. Infectious diseases.
[142] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[143] A. Gnirke,et al. ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads , 2009, Genome Biology.
[144] Dr. Susumu Ohno. Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.
[145] H. Maamar,et al. Mycobacterium tuberculosis Uses Host Triacylglycerol to Accumulate Lipid Droplets and Acquires a Dormancy-Like Phenotype in Lipid-Loaded Macrophages , 2011, PLoS pathogens.
[146] A. Nerlich,et al. Paleopathology of Human Tuberculosis and the Potential Role of Climate , 2009, Interdisciplinary perspectives on infectious diseases.
[147] B. Arriaza,et al. Pre-Columbian tuberculosis in northern Chile: molecular and skeletal evidence. , 1995, American journal of physical anthropology.
[148] A. Mortazavi,et al. Genome-Wide Mapping of in Vivo Protein-DNA Interactions , 2007, Science.
[149] J. Collins,et al. Microbial persistence and the road to drug resistance. , 2013, Cell host & microbe.
[150] Monographies,et al. MRSA: A Global Threat , 2012 .
[151] Steven J. M. Jones,et al. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. , 2011, The New England journal of medicine.
[152] M. Moroni,et al. Comparison between spoligotyping and IS6110 restriction fragment length polymorphisms in molecular genotyping analysis of Mycobacterium tuberculosis strains. , 2005, Molecular and cellular probes.
[153] S. Gillespie,et al. Comparison of fitness of two isolates of Mycobacterium tuberculosis, one of which had developed multi-drug resistance during the course of treatment. , 2000, The Journal of infection.
[154] Serge Mostowy,et al. The origin and evolution of Mycobacterium tuberculosis. , 2005, Clinics in chest medicine.
[155] B. Birren,et al. Independent Large Scale Duplications in Multiple M. tuberculosis Lineages Overlapping the Same Genomic Region , 2012, PloS one.
[156] T. Whittam,et al. Is Mycobacterium tuberculosis 15,000 years old? , 1994, The Journal of infectious diseases.
[157] V. Møller-Christensen,et al. A case of spondylitis tuberculosa in the Danish Neolithic Age. , 1972, Danish medical bulletin.
[158] E. Böttger,et al. Fitness of antibiotic-resistant microorganisms and compensatory mutations , 1998, Nature Medicine.
[159] P. Farnham. Insights from genomic profiling of transcription factors , 2009, Nature Reviews Genetics.
[160] David G. Russell,et al. Who puts the tubercle in tuberculosis? , 2007, Nature Reviews Microbiology.
[161] Daniel J. Wilson,et al. Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study , 2013, The Lancet. Infectious diseases.
[162] Amit Singh,et al. Mycobacterium tuberculosis WhiB3 responds to O2 and nitric oxide via its [4Fe-4S] cluster and is essential for nutrient starvation survival , 2007, Proceedings of the National Academy of Sciences.
[163] E. Muñoz-Elías,et al. Replication Dynamics of Mycobacterium tuberculosis in Chronically Infected Mice , 2005, Infection and Immunity.
[164] Ben Shields. The Bioarchaeology of Tuberculosis: A Global View on a Reemerging Disease , 2005 .
[165] Linus Sandegren,et al. Bacterial gene amplification: implications for the evolution of antibiotic resistance , 2009, Nature Reviews Microbiology.
[166] S. Gharbia,et al. Multispacer Sequence Typing for Mycobacterium tuberculosis Genotyping , 2008, PloS one.
[167] S. Borrell,et al. The heterogeneous evolution of multidrug-resistant Mycobacterium tuberculosis. , 2013, Trends in genetics : TIG.
[168] M. Behr,et al. Insertion and Deletion Events That Define the Pathogen Mycobacterium avium subsp. paratuberculosis , 2008, Journal of bacteriology.
[169] Julian Parkhill,et al. Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study , 2013, The Lancet. Respiratory medicine.
[170] C. Markert,et al. Evolution of the Gene , 1948, Nature.
[171] B. Barrell,et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence , 1998, Nature.
[172] M. Bennett,et al. Microfluidic devices for measuring gene network dynamics in single cells , 2009, Nature Reviews Genetics.
[173] S. Kaufmann,et al. How can immunology contribute to the control of tuberculosis? , 2001, Nature Reviews Immunology.
[174] S. Gagneux. Genetic diversity in Mycobacterium tuberculosis. , 2013, Current topics in microbiology and immunology.
[175] Leen Rigouts,et al. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology , 2006, BMC Microbiology.
[176] Stefan Niemann,et al. Mycobacterium tuberculosis wears what it eats. , 2010, Cell host & microbe.
[177] A. Stone,et al. Tuberculosis on the north coast of Peru: skeletal and molecular paleopathology of late pre-Hispanic and postcontact mycobacterial disease , 2010 .
[178] C. Sizer. Diseases in Antiquity: A Survey of the Diseases, Injuries and Surgery of Early Populations , 1969, Medical History.
[179] Uri Alon,et al. An Introduction to Systems Biology , 2006 .
[180] Galit Lev-Maor,et al. Tuberculosis: from prehistory to Robert Koch, as revealed by ancient DNA. , 2004, The Lancet. Infectious diseases.
[181] M. Behr,et al. Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains , 2012, BMC Microbiology.
[182] P. V. Prasad. General medicine in Atharvaveda with special reference to Yaksma (consumption/tuberculosis). , 2002, Bulletin of the Indian Institute of History of Medicine.
[183] Marc Lipsitch,et al. Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug resistant tuberculosis , 2013, Nature Genetics.
[184] Ben Sidders,et al. A highly conserved transcriptional repressor controls a large regulon involved in lipid degradation in Mycobacterium smegmatis and Mycobacterium tuberculosis , 2007, Molecular microbiology.
[185] Anna Lyubetskaya,et al. ChIP-Seq and the complexity of bacterial transcriptional regulation. , 2013, Current topics in microbiology and immunology.