Investigating microstructural variation in the human hippocampus using non-negative matrix factorization
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M. Mallar Chakravarty | Christine L. Tardif | Christopher John Steele | Gabriel A. Devenyi | Jürgen Germann | Sejal Patel | Raihaan Patel | Anthony G. X. Chen | M. Chakravarty | Jurgen Germann | C. Tardif | C. Steele | Raihaan Patel | Sejal Patel | Anthony G. X. Chen | Raihaan M. Patel
[1] M. Sliwinski,et al. Differential association of left and right hippocampal volumes with verbal episodic and spatial memory in older adults , 2016, Neuropsychologia.
[2] S. Heckers,et al. Neuroimaging studies of the hippocampus in schizophrenia , 2001, Hippocampus.
[3] A. McIntosh,et al. Multivariate statistical analyses for neuroimaging data. , 2013, Annual review of psychology.
[4] R. Gur,et al. A cognitive neuroscience-based computerized battery for efficient measurement of individual differences: Standardization and initial construct validation , 2010, Journal of Neuroscience Methods.
[5] M. O’Sullivan,et al. White matter damage on diffusion tensor imaging correlates with age-related cognitive decline , 2006, Neurology.
[6] Ruth Ann Marrie,et al. Can T1w/T2w ratio be used as a myelin‐specific measure in subcortical structures? Comparisons between FSE‐based T1w/T2w ratios, GRASE‐based T1w/T2w ratios and multi‐echo GRASE‐based myelin water fractions , 2018, NMR in biomedicine.
[7] Valerie A. Carr,et al. A harmonized segmentation protocol for hippocampal and parahippocampal subregions: Why do we need one and what are the key goals? , 2017, Hippocampus.
[8] Allan R. Jones,et al. Genomic Anatomy of the Hippocampus , 2008, Neuron.
[9] K. Amunts,et al. Cytoarchitectonic mapping of the human amygdala, hippocampal region and entorhinal cortex: intersubject variability and probability maps , 2005, Anatomy and Embryology.
[10] C. F. Beckmann,et al. Tensorial extensions of independent component analysis for multisubject FMRI analysis , 2005, NeuroImage.
[11] B. Turetsky,et al. An fMRI Study of Sex Differences in Regional Activation to a Verbal and a Spatial Task , 2000, Brain and Language.
[12] Michael Weiner,et al. Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI , 2010, NeuroImage.
[13] L. Westlye,et al. Intracortical Myelin Links with Performance Variability across the Human Lifespan: Results from T1- and T2-Weighted MRI Myelin Mapping and Diffusion Tensor Imaging , 2013, The Journal of Neuroscience.
[14] Gopikrishna Deshpande,et al. Functional connectivity of the left and right hippocampi: Evidence for functional lateralization along the long-axis using meta-analytic approaches and ultra-high field functional neuroimaging , 2016, NeuroImage.
[15] A. Herlitz,et al. The magnitude of sex differences in verbal episodic memory increases with social progress: Data from 54 countries across 40 years , 2019, PloS one.
[16] R. Morris,et al. Imaging age‐related cognitive decline: A comparison of diffusion tensor and magnetization transfer MRI , 2009, Journal of magnetic resonance imaging : JMRI.
[17] D. Kimura. Sex differences in the brain. , 1992, Scientific American.
[18] Brian B. Avants,et al. The optimal template effect in hippocampus studies of diseased populations , 2010, NeuroImage.
[19] J. O'Keefe,et al. The hippocampus as a spatial map. Preliminary evidence from unit activity in the freely-moving rat. , 1971, Brain research.
[20] Alan C. Evans,et al. Multifactorial causal model of brain (dis)organization and therapeutic intervention: Application to Alzheimer’s disease , 2017, NeuroImage.
[21] M. McCloskey,et al. IQ and nonplanning impulsivity are independently associated with delay discounting in middle-aged adults , 2007 .
[22] M. Mallar Chakravarty,et al. Multi-atlas segmentation of the whole hippocampus and subfields using multiple automatically generated templates , 2014, NeuroImage.
[23] Gregory A. Nelson,et al. Functional Consequences of , 2013 .
[24] Menno P. Witter,et al. A pathophysiological framework of hippocampal dysfunction in ageing and disease , 2011, Nature Reviews Neuroscience.
[25] R. Woods,et al. Direct Visualization and Mapping of the Spatial Course of Fiber Tracts at Microscopic Resolution in the Human Hippocampus , 2016, Cerebral cortex.
[26] G. Biessels,et al. Hippocampal subfield volumes at 7T in early Alzheimer's disease and normal aging , 2014, Neurobiology of Aging.
[27] W. Qin,et al. Disrupted Resting-State Functional Connectivity in Hippocampal Subregions After Sleep Deprivation , 2019, Neuroscience.
[28] Vince D. Calhoun,et al. Single subject prediction of brain disorders in neuroimaging: Promises and pitfalls , 2017, NeuroImage.
[29] T. Bliss,et al. The Hippocampus Book , 2006 .
[30] Essa Yacoub,et al. The WU-Minn Human Connectome Project: An overview , 2013, NeuroImage.
[31] Peter Stoeter,et al. Diagnostic utility of hippocampal size and mean diffusivity in amnestic MCI , 2007, Neurobiology of Aging.
[32] Wiro J. Niessen,et al. Structural and diffusion MRI measures of the hippocampus and memory performance , 2012, NeuroImage.
[33] S. Eickhoff,et al. Empirical examination of the replicability of associations between brain structure and psychological variables , 2018, bioRxiv.
[34] I. Koerte,et al. Diffusion Tensor Imaging , 2014 .
[35] H. Eichenbaum,et al. The Episodic Memory System: Neurocircuitry and Disorders , 2010, Neuropsychopharmacology.
[36] Jonas Persson,et al. Sex differences in volume and structural covariance of the anterior and posterior hippocampus , 2014, NeuroImage.
[37] D G Norris,et al. Diffusion tensor imaging of the hippocampus predicts the risk of dementia; the RUN DMC study , 2016, Human brain mapping.
[38] Christos Davatzikos,et al. Evaluation of non-negative matrix factorization of grey matter in age prediction , 2018, NeuroImage.
[39] Jan Sijbers,et al. Weighted linear least squares estimation of diffusion MRI parameters: Strengths, limitations, and pitfalls , 2013, NeuroImage.
[40] Yaakov Stern,et al. Hippocampal Atrophy Relates to Fluid Intelligence Decline in the Elderly , 2010, Journal of the International Neuropsychological Society.
[41] Eric Vermetten,et al. Hippocampal volume, memory, and cortisol status in major depressive disorder: effects of treatment , 2004, Biological Psychiatry.
[42] M. Mallar Chakravarty,et al. Towards a validation of atlas warping techniques , 2008, Medical Image Anal..
[43] D. Collins,et al. Performing label‐fusion‐based segmentation using multiple automatically generated templates , 2013, Human brain mapping.
[44] F. Beissner,et al. Psychotherapy With Somatosensory Stimulation for Endometriosis-Associated Pain: The Role of the Anterior Hippocampus , 2017, Biological Psychiatry.
[45] Alexander Leemans,et al. Microstructural maturation of the human brain from childhood to adulthood , 2008, NeuroImage.
[46] N. Chater,et al. Associations between a one-shot delay discounting measure and age, income, education and real-world impulsive behavior , 2009 .
[47] D. Durran. Numerical methods for wave equations in geophysical fluid dynamics , 1999 .
[48] Marco Ganzetti,et al. Whole brain myelin mapping using T1- and T2-weighted MR imaging data , 2014, Front. Hum. Neurosci..
[49] Derek K. Jones,et al. “Squashing peanuts and smashing pumpkins”: How noise distorts diffusion‐weighted MR data , 2004, Magnetic resonance in medicine.
[50] Paul M. Thompson,et al. Heritability and reliability of automatically segmented human hippocampal formation subregions , 2015, NeuroImage.
[51] R. Gur,et al. Patterns of coordinated cortical remodeling during adolescence and their associations with functional specialization and evolutionary expansion , 2017, Proceedings of the National Academy of Sciences.
[52] Michael I. Miller,et al. Fornix integrity and hippocampal volume predict memory decline and progression to Alzheimer’s disease , 2012, Alzheimer's & Dementia.
[53] P. Yushkevich,et al. Automated volumetry and regional thickness analysis of hippocampal subfields and medial temporal cortical structures in mild cognitive impairment , 2015, Human brain mapping.
[54] Bruce Fischl,et al. Gray matter myelination of 1555 human brains using partial volume corrected MRI images , 2015, NeuroImage.
[55] Simon B Eickhoff,et al. Imaging-based parcellations of the human brain , 2018, Nature Reviews Neuroscience.
[56] Alistair Black,et al. Introduction , 2004, Libr. Trends.
[57] H. Duvernoy. The Human Hippocampus , 1988, J.F. Bergmann-Verlag.
[58] Katrin Amunts,et al. Multimodal Parcellations and Extensive Behavioral Profiling Tackling the Hippocampus Gradient. , 2019, Cerebral cortex.
[59] W. Honer,et al. Parcellation of the human hippocampus based on gray matter volume covariance: Replicable results on healthy young adults , 2019, Human brain mapping.
[60] Anders M. Dale,et al. The Adolescent Brain Cognitive Development (ABCD) study: Imaging acquisition across 21 sites , 2018, Developmental Cognitive Neuroscience.
[61] H. Duvernoy,et al. The Human Hippocampus: Functional Anatomy, Vascularization and Serial Sections with MRI , 1997 .
[62] B. Fornberg. Generation of finite difference formulas on arbitrarily spaced grids , 1988 .
[63] H. Sebastian Seung,et al. Learning the parts of objects by non-negative matrix factorization , 1999, Nature.
[64] Daniel S. Margulies,et al. Predicting brain-age from multimodal imaging data captures cognitive impairment , 2016, NeuroImage.
[65] J. Pekar,et al. A method for making group inferences from functional MRI data using independent component analysis , 2001, Human brain mapping.
[66] Alexander J. Barnett,et al. Distinct hippocampal functional networks revealed by tractography-based parcellation , 2015, Brain Structure and Function.
[67] Steen Moeller,et al. Advances in diffusion MRI acquisition and processing in the Human Connectome Project , 2013, NeuroImage.
[68] Anthony Randal McIntosh,et al. Partial Least Squares (PLS) methods for neuroimaging: A tutorial and review , 2011, NeuroImage.
[69] D. Selkoe. Alzheimer's disease. , 2011, Cold Spring Harbor perspectives in biology.
[70] D. V. van Essen,et al. Mapping Human Cortical Areas In Vivo Based on Myelin Content as Revealed by T1- and T2-Weighted MRI , 2011, The Journal of Neuroscience.
[71] M. Chakravarty,et al. Functional Consequences of Neurite Orientation Dispersion and Density in Humans across the Adult Lifespan , 2015, The Journal of Neuroscience.
[72] Thomas R. Knösche,et al. White matter integrity, fiber count, and other fallacies: The do's and don'ts of diffusion MRI , 2013, NeuroImage.
[73] G. Chételat,et al. Structural imaging of hippocampal subfields in healthy aging and Alzheimer’s disease , 2015, Neuroscience.
[74] Ali R. Khan,et al. FreeSurfer-initiated fully-automated subcortical brain segmentation in MRI using Large Deformation Diffeomorphic Metric Mapping , 2008, NeuroImage.
[75] J. Knierim. The hippocampus , 2015, Current Biology.
[76] Christos Davatzikos,et al. Finding imaging patterns of structural covariance via Non-Negative Matrix Factorization , 2015, NeuroImage.
[77] C. Jack,et al. Prediction of AD with MRI-based hippocampal volume in mild cognitive impairment , 1999, Neurology.
[78] A. Alexander,et al. Diffusion tensor imaging of the brain , 2007, Neurotherapeutics.
[79] Thomas H. B. FitzGerald,et al. Widespread age-related differences in the human brain microstructure revealed by quantitative magnetic resonance imaging , 2014, Neurobiology of Aging.
[80] Anthony Randal McIntosh,et al. Partial least squares analysis of neuroimaging data: applications and advances , 2004, NeuroImage.
[81] Stephen M. Smith,et al. Investigations into resting-state connectivity using independent component analysis , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.
[82] Erkki Oja,et al. Linear and Nonlinear Projective Nonnegative Matrix Factorization , 2010, IEEE Transactions on Neural Networks.
[83] Isabelle Guyon,et al. A Stability Based Method for Discovering Structure in Clustered Data , 2001, Pacific Symposium on Biocomputing.
[84] E. Tulving,et al. Episodic and declarative memory: Role of the hippocampus , 1998, Hippocampus.
[85] K. Jeffery,et al. The Hippocampal and Parietal Foundations of Spatial Cognition , 1999 .
[86] Jon Pipitone,et al. Hippocampal (subfield) volume and shape in relation to cognitive performance across the adult lifespan , 2015, Human brain mapping.
[87] L. K. Hansen,et al. Generalizable Patterns in Neuroimaging: How Many Principal Components? , 1999, NeuroImage.
[88] D. Louis Collins,et al. A clinical-anatomical signature of Parkinson's disease identified with partial least squares and magnetic resonance imaging , 2017, NeuroImage.
[89] Nathan Halko,et al. Finding Structure with Randomness: Probabilistic Algorithms for Constructing Approximate Matrix Decompositions , 2009, SIAM Rev..
[90] Steen Moeller,et al. The Human Connectome Project: A data acquisition perspective , 2012, NeuroImage.
[91] Adon F. G. Rosen,et al. Gestational Age is Dimensionally Associated with Structural Brain Network Abnormalities Across Development. , 2019, Cerebral cortex.
[92] S. Small,et al. The Longitudinal Axis of the Hippocampal Formation: Its Anatomy, Circuitry, and Role in Cognitive Function , 2002, Reviews in the neurosciences.
[93] Simon B. Eickhoff,et al. Evidence for an anterior–posterior differentiation in the human hippocampal formation revealed by meta-analytic parcellation of fMRI coordinate maps: Focus on the subiculum , 2015, NeuroImage.
[94] L. Wolfson,et al. Processing speed in normal aging: Effects of white matter hyperintensities and hippocampal volume loss , 2014, Neuropsychology, development, and cognition. Section B, Aging, neuropsychology and cognition.
[95] M. Mallar Chakravarty,et al. Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol , 2015, NeuroImage.
[96] C. Lebel,et al. Diffusion tensor imaging of white matter tract evolution over the lifespan , 2012, NeuroImage.
[97] Jan Peters,et al. Episodic Future Thinking Reduces Reward Delay Discounting through an Enhancement of Prefrontal-Mediotemporal Interactions , 2010, Neuron.
[98] P. Basser,et al. MR diffusion tensor spectroscopy and imaging. , 1994, Biophysical journal.
[99] A. Kaufman,et al. How do educational attainment and gender relate to fluid intelligence, crystallized intelligence, and academic skills at ages 22-90 years? , 2009, Archives of clinical neuropsychology : the official journal of the National Academy of Neuropsychologists.
[100] Natasha Sayal. Exercise training increases size of hippocampus and improves memory PNAS (2011) vol. 108 | no. 7 | 3017–3022 , 2015, Annals of neurosciences.
[101] A. Herlitz,et al. Structural whole‐brain covariance of the anterior and posterior hippocampus: Associations with age and memory , 2018, Hippocampus.
[102] B. Milner,et al. What went where? Impaired object‐location learning in patients with right hippocampal lesions , 2005, Hippocampus.
[103] Florian Beissner,et al. A data‐driven approach to mapping cortical and subcortical intrinsic functional connectivity along the longitudinal hippocampal axis , 2016, Human brain mapping.
[104] Stephen Pickup,et al. Characterizing the human hippocampus in aging and Alzheimer’s disease using a computational atlas derived from ex vivo MRI and histology , 2018, Proceedings of the National Academy of Sciences.
[105] E. McAuley,et al. Exercise training increases size of hippocampus and improves memory , 2011, Proceedings of the National Academy of Sciences.
[106] Arno Villringer,et al. Advanced MRI techniques to improve our understanding of experience-induced neuroplasticity , 2016, NeuroImage.
[107] Julia A. Scott,et al. Independent value added by diffusion MRI for prediction of cognitive function in older adults☆ , 2017, NeuroImage: Clinical.
[108] Abraham Z. Snyder,et al. Function in the human connectome: Task-fMRI and individual differences in behavior , 2013, NeuroImage.
[109] B. Pakkenberg,et al. Marked loss of myelinated nerve fibers in the human brain with age , 2003, The Journal of comparative neurology.
[110] C. Frith,et al. The functional neuroanatomy of episodic memory , 1997, Trends in Neurosciences.
[111] Ching-Hsing Yu,et al. SciNet: Lessons Learned from Building a Power-efficient Top-20 System and Data Centre , 2010 .
[112] G. Bartzokis. Age-related myelin breakdown: a developmental model of cognitive decline and Alzheimer’s disease , 2004, Neurobiology of Aging.
[113] W D Obrist,et al. Sex and handedness differences in cerebral blood flow during rest and cognitive activity. , 1982, Science.
[114] Guy Madison,et al. Sex differences in brain size and general intelligence (g) , 2017 .
[115] Alan Connelly,et al. MRtrix: Diffusion tractography in crossing fiber regions , 2012, Int. J. Imaging Syst. Technol..
[116] J BELBEY,et al. What is schizophrenia? , 1982, Schizophrenia bulletin.
[117] P. Matthews,et al. Multimodal population brain imaging in the UK Biobank prospective epidemiological study , 2016, Nature Neuroscience.
[118] Brian B. Avants,et al. Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain , 2008, Medical Image Anal..
[119] Dean Sabatinelli,et al. A Meta‐Analysis of fMRI Activation Differences during Episodic Memory in Alzheimer's Disease and Mild Cognitive Impairment , 2015, Journal of neuroimaging : official journal of the American Society of Neuroimaging.
[120] Jesper Andersson,et al. A multi-modal parcellation of human cerebral cortex , 2016, Nature.
[121] H. Braak,et al. Neuropathological stageing of Alzheimer-related changes , 2004, Acta Neuropathologica.
[122] Anatol C. Kreitzer,et al. Plasticity in gray and white: neuroimaging changes in brain structure during learning , 2012, Nature Neuroscience.
[123] E. Maguire,et al. The Human Hippocampus and Spatial and Episodic Memory , 2002, Neuron.
[124] Mark Jenkinson,et al. The minimal preprocessing pipelines for the Human Connectome Project , 2013, NeuroImage.
[125] C. Jack,et al. Modifiable factors that alter the size of the hippocampus with ageing , 2012, Nature Reviews Neurology.
[126] Raihaan Patel,et al. Your algorithm might think the hippocampus grows in Alzheimer's disease: Caveats of longitudinal automated hippocampal volumetry , 2017, Human brain mapping.
[127] R. Gur,et al. Development of Abbreviated Nine-Item Forms of the Raven’s Standard Progressive Matrices Test , 2012, Assessment.
[128] C. Jack,et al. Alzheimer's Disease Neuroimaging Initiative , 2008 .
[129] A R McIntosh,et al. General and specific brain regions involved in encoding and retrieval of events: what, where, and when. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[130] G. Chételat,et al. Differential associations of age with volume and microstructure of hippocampal subfields in healthy older adults , 2015, Human brain mapping.
[131] M. Mallar Chakravarty,et al. Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging , 2016, NeuroImage.
[132] C. Caltagirone,et al. Hippocampal mean diffusivity and memory in healthy elderly individuals , 2010, Neurology.
[133] R. Morris,et al. Diffusion tensor imaging detects age related white matter change over a 2 year follow-up which is associated with working memory decline , 2009, Journal of Neurology, Neurosurgery & Psychiatry.
[134] Steen Moeller,et al. Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project , 2013, NeuroImage.
[135] Jo Knight,et al. Heritability of hippocampal subfield volumes using a twin and non‐twin siblings design , 2017, Human brain mapping.
[136] D. Glahn,et al. Fractional anisotropy of water diffusion in cerebral white matter across the lifespan , 2012, Neurobiology of Aging.
[137] M. Weiner,et al. The dynamics of cortical and hippocampal atrophy in Alzheimer disease. , 2011, Archives of neurology.
[138] L. Staib,et al. Hippocampal volume reduction in major depression. , 2000, The American journal of psychiatry.
[139] Muzamil Arshad,et al. Test–retest reliability and concurrent validity of in vivo myelin content indices: Myelin water fraction and calibrated T1w/T2w image ratio , 2017, Human brain mapping.
[140] 이지형. Data Driven Approach의 시대 , 2018 .
[141] Raquel E Gur,et al. Age group and sex differences in performance on a computerized neurocognitive battery in children age 8-21. , 2012, Neuropsychology.
[142] Christopher Rorden,et al. Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank , 2017 .
[143] Chongde Lin,et al. Hippocampal subfields' volumes are more relevant to fluid intelligence than verbal working memory , 2017 .
[144] Mathias Pessiglione,et al. A Critical Role for the Hippocampus in the Valuation of Imagined Outcomes , 2013, PLoS biology.
[145] Christos Boutsidis,et al. SVD based initialization: A head start for nonnegative matrix factorization , 2008, Pattern Recognit..
[146] Jacques-Donald Tournier,et al. Diffusion tensor imaging and beyond , 2011, Magnetic resonance in medicine.
[147] D. Amaral,et al. The dentate gyrus: fundamental neuroanatomical organization (dentate gyrus for dummies). , 2007, Progress in brain research.
[148] Adam J. Woods,et al. Cognitive Aging and the Hippocampus in Older Adults , 2016, Front. Aging Neurosci..
[149] M. Mallar Chakravarty,et al. A novel in vivo atlas of human hippocampal subfields using high-resolution 3T magnetic resonance imaging , 2013, NeuroImage.
[150] Christine L. Tardif,et al. MR‐based age‐related effects on the striatum, globus pallidus, and thalamus in healthy individuals across the adult lifespan , 2019, Human brain mapping.
[151] Paul M. Thompson,et al. Regional specificity of hippocampal volume reductions in first-episode schizophrenia , 2004, NeuroImage.
[152] E. Lein,et al. Functional organization of the hippocampal longitudinal axis , 2014, Nature Reviews Neuroscience.