Conserved developmental transcriptomes in evolutionarily divergent species

[1]  William N. Venables,et al.  Modern Applied Statistics with S , 2010 .

[2]  Anup Parikh,et al.  dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface , 2009, BMC Bioinformatics.

[3]  G. Shaulsky,et al.  Kin Discrimination Increases with Genetic Distance in a Social Amoeba , 2008, PLoS biology.

[4]  B. Williams,et al.  Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.

[5]  M. Gerstein,et al.  The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing , 2008, Science.

[6]  Adam Kuspa,et al.  Microarray phenotyping in Dictyostelium reveals a regulon of chemotaxis genes , 2005, Bioinform..

[7]  Rolf Olsen,et al.  Comparing the Dictyostelium and Entamoeba Genomes Reveals an Ancient Split in the Conosa Lineage , 2005, PLoS Comput. Biol..

[8]  S. Pääbo,et al.  Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees , 2005, Science.

[9]  Martin Kuiper,et al.  BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks , 2005, Bioinform..

[10]  C. Wilke,et al.  Why highly expressed proteins evolve slowly. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[11]  David L. Steffen,et al.  The genome of the social amoeba Dictyostelium discoideum , 2005, Nature.

[12]  Eugene V Koonin,et al.  Evolutionary significance of gene expression divergence. , 2005, Gene.

[13]  I. Yanai,et al.  Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control. , 2004, Omics : a journal of integrative biology.

[14]  Gordon K Smyth,et al.  Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .

[15]  Cornelia I Bargmann,et al.  Comparing genomic expression patterns across species identifies shared transcriptional profile in aging , 2004, Nature Genetics.

[16]  S. Bergmann,et al.  Similarities and Differences in Genome-Wide Expression Data of Six Organisms , 2003, PLoS biology.

[17]  Joshua M. Stuart,et al.  A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules , 2003, Science.

[18]  W. Loomis,et al.  Changing Patterns of Gene Expression in Dictyostelium Prestalk Cell Subtypes Recognized by In Situ Hybridization with Genes from Microarray Analyses , 2003, Eukaryotic Cell.

[19]  Scott A. Rifkin,et al.  Evolution of gene expression in the Drosophila melanogaster subgroup , 2003, Nature Genetics.

[20]  Rolf Apweiler,et al.  Applications of InterPro in Protein Annotation and Genome Analysis , 2002, Briefings Bioinform..

[21]  T Hwa,et al.  Expression patterns of cell-type-specific genes in Dictyostelium. , 2001, Molecular biology of the cell.

[22]  P. Fisher.  Dictyostelium: Evolution, Cell Biology, and the Development of Multicellularity: Richard H. Kessin. Bibliography by Jakob Franke, Cambridge University Press, Cambridge, UK. Publication Date: 11th January, 2001. xiv+294 pp. ISBN 0-521-58364-0 (hardback). Price: £55.00 (US$90.00) , 2001 .

[23]  R. Kessin.  Dictyostelium: Membranes and Organelles of Dictyostelium , 2001 .

[24]  D. Sparrow,et al.  Regulation of the tinman homologues in Xenopus embryos. , 2000, Developmental biology.

[25]  Yudong D. He,et al.  Functional Discovery via a Compendium of Expression Profiles , 2000, Cell.

[26]  S. Carroll.  Endless Forms The Evolution of Gene Regulation and Morphological Diversity , 2000, Cell.

[27]  Ross Ihaka,et al.  Gentleman R: R: A language for data analysis and graphics , 1996 .

[28]  H. Lodish,et al.  Developmental regulation of Dictyostelium discoideum actin gene fusions carried on low-copy and high-copy transformation vectors , 1986, Molecular and cellular biology.

[29]  Jerome B. Zeldis,et al.  Dictyostelium Discoideum: A Developmental System , 1976, The Yale Journal of Biology and Medicine.

[30]  M. King,et al.  Evolution at two levels in humans and chimpanzees. , 1975, Science.

[31]  K. Raper.  DICTYOSTELIUM DISCOIDEUM , A NEW SPECIES OF SLIME MOLD FROM DECAYING FOREST LEAVES ' By , 2010 .

[32]  M. Gerstein,et al.  RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.

[33]  Gordon K. Smyth,et al.  limma: Linear Models for Microarray Data , 2005 .

[34]  Brown Ta.  Genomes 2nd edition , 2002 .

[35]  L Wolpert,et al.  Principles of Development, 2nd Edition , 2002 .

[36]  Lewis Wolpert,et al.  Principles of Development , 1997 .

[37]  M. Sussman,et al.  Cultivation and synchronous morphogenesis of Dictyostelium under controlled experimental conditions. , 1987, Methods in cell biology.

[38]  C. H. Waddington,et al.  Developmental systems : insects , 1972 .

[39]  K. Raper,et al.  INTERSPECIFIC MIXTURES IN THE DICTYOSTELIACEAE , 1941 .