Effects of Trophic Acclimation on Growth and Expression Profiles of Genes Encoding Enzymes of Primary Metabolism and Plastid Transporters of Chlamydomonas reinhardtii

In this paper, the effect of prolonged trophic acclimation on the subsequent growth of Chlamydomonas reinhardtii batch cultures was studied. The mixotrophic (light + acetate) acclimation stimulated subsequent growth at both mixotrophy and autotrophy conditions and altered the expression profile of genes encoding enzymes of primary metabolism and plastid transporters. Besides the trophic effect, the influence of Chlamydomonas culture growth stage on gene expression was determined. Under mixotrophic conditions, this effect was most pronounced in the first half of the exponential growth with partial retention of the previous acclimation period traits. The autotrophy acclimation effect was more complex and its significance was enhanced at the end of the growth and in the stationary phase.

[1]  A. Nakanishi,et al.  Evaluation of Shifts of Gene Transcription Levels of Unicellular Green Alga Chlamydomonas reinhardtii Due to UV-C Irradiation , 2023, Microorganisms.

[2]  Laurence Yang,et al.  Novel context-specific genome-scale modelling explores the potential of triacylglycerol production by Chlamydomonas reinhardtii , 2023, Microbial Cell Factories.

[3]  Song Xue,et al.  Co-Expression of Lipid Transporters Simultaneously Enhances Oil and Starch Accumulation in the Green Microalga Chlamydomonas reinhardtii under Nitrogen Starvation , 2023, Metabolites.

[4]  Naohiro Kato,et al.  Chlamydomonas reinhardtii Alternates Peroxisomal Contents in Response to Trophic Conditions , 2022, Cells.

[5]  Ying Huang,et al.  Increased Lipids in Chlamydomonas reinhardtii by Multiple Regulations of DOF, LACS2, and CIS1 , 2022, International journal of molecular sciences.

[6]  J. Berges,et al.  Growth parameters and responses of green algae across a gradient of phototrophic, mixotrophic and heterotrophic conditions , 2022, PeerJ.

[7]  X. Johnson,et al.  Interactions Between Carbon Metabolism and Photosynthetic Electron Transport in a Chlamydomonas reinhardtii Mutant Without CO2 Fixation by RuBisCO , 2022, Frontiers in Plant Science.

[8]  F. Chen,et al.  Coordinating Carbon Metabolism and Cell Cycle of Chlamydomonas reinhardtii with Light Strategies under Nitrogen Recovery , 2021, Microorganisms.

[9]  A. Weber,et al.  Physiological functions of malate shuttles in plants and algae. , 2021, Trends in plant science.

[10]  Alexandra-Viola Bohne,et al.  Dynamic light- and acetate-dependent regulation of the proteome and lysine acetylome of Chlamydomonas. , 2021, The Plant Journal.

[11]  M. Shishova,et al.  The role of trophic conditions in the regulation of physiology and metabolism of Chlamydomonas reinhardtii during batch culturing , 2021, Journal of Applied Phycology.

[12]  A. Kiparissides,et al.  The effects of illumination and trophic strategy on gene expression in Chlamydomonas reinhardtii , 2021, Algal Research.

[13]  N. Ye,et al.  Integrating Transcriptomics and Metabolomics to Characterize Metabolic Regulation to Elevated CO2 in Chlamydomonas Reinhardtii , 2021, Marine Biotechnology.

[14]  Elsinraju Devadasu,et al.  Autophagy Induced Accumulation of Lipids in pgrl1 and pgr5 of Chlamydomonas reinhardtii Under High Light , 2020, bioRxiv.

[15]  E. Ermilova Cold Stress Response: An Overview in Chlamydomonas , 2020, Frontiers in Plant Science.

[16]  M. Shishova,et al.  Shift in Expression of the Genes of Primary Metabolism and Chloroplast Transporters in Chlamydomonas reinhardtii under Different Trophic Conditions , 2020, Russian Journal of Plant Physiology.

[17]  M. Shishova,et al.  Alteration in the Expression of Genes Encoding Primary Metabolism Enzymes and Plastid Transporters during the Culture Growth of Chlamydomonas reinhardtii , 2020, Molecular Biology.

[18]  F. Remacle,et al.  Metabolic, Physiological, and Transcriptomics Analysis of Batch Cultures of the Green Microalga Chlamydomonas Grown on Different Acetate Concentrations , 2019, Cells.

[19]  A. Danon,et al.  When Unity Is Strength: The Strategies Used by Chlamydomonas to Survive Environmental Stresses , 2019, Cells.

[20]  Y. Li-Beisson,et al.  Subcellular Energetics and Carbon Storage in Chlamydomonas , 2019, Cells.

[21]  A. Weber,et al.  Multiomics resolution of molecular events during a day in the life of Chlamydomonas , 2019, Proceedings of the National Academy of Sciences.

[22]  M. Shishova,et al.  Coordinated alterations in gene expression and metabolomic profiles of Chlamydomonas reinhardtii during batch autotrophic culturing , 2018 .

[23]  Marti J. Anderson,et al.  Permutational Multivariate Analysis of Variance (PERMANOVA) , 2017 .

[24]  E. Fernández,et al.  Understanding nitrate assimilation and its regulation in microalgae , 2015, Front. Plant Sci..

[25]  E. Thévenot,et al.  Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses. , 2015, Journal of proteome research.

[26]  Matteo Pellegrini,et al.  The Path to Triacylglyceride Obesity in the sta6 Strain of Chlamydomonas reinhardtii , 2014, Eukaryotic Cell.

[27]  Michael Hippler,et al.  The Metabolic Status Drives Acclimation of Iron Deficiency Responses in Chlamydomonas reinhardtii as Revealed by Proteomics Based Hierarchical Clustering and Reverse Genetics* , 2013, Molecular & Cellular Proteomics.

[28]  Chaoguang Tian,et al.  Transcriptome analysis of Chlamydomonas reinhardtii during the process of lipid accumulation. , 2013, Genomics.

[29]  J. Alric,et al.  Central Carbon Metabolism and Electron Transport in Chlamydomonas reinhardtii: Metabolic Constraints for Carbon Partitioning between Oil and Starch , 2013, Eukaryotic Cell.

[30]  Guangce Wang,et al.  SHORT‐TERM EFFECTS OF ACETATE AND MICROAEROBIC CONDITIONS ON PHOTOSYNTHESIS AND RESPIRATION IN CHLORELLA SOROKINIANA GXNN 01 (CHLOROPHYTA) 1 , 2012, Journal of phycology.

[31]  X. Johnson,et al.  Interaction between Starch Breakdown, Acetate Assimilation, and Photosynthetic Cyclic Electron Flow in Chlamydomonas reinhardtii* , 2012, The Journal of Biological Chemistry.

[32]  P. May,et al.  Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. , 2010, Molecular bioSystems.

[33]  John A. Morgan,et al.  BMC Systems Biology BioMed Central Research article , 2009 .

[34]  Joachim Selbig,et al.  pcaMethods - a bioconductor package providing PCA methods for incomplete data , 2007, Bioinform..

[35]  B. Fischer,et al.  Growth condition-dependent sensitivity, photodamage and stress response of Chlamydomonas reinhardtii exposed to high light conditions. , 2006, Plant & cell physiology.

[36]  David Dauvillée,et al.  Circadian Clock Regulation of Starch Metabolism Establishes GBSSI as a Major Contributor to Amylopectin Synthesis in Chlamydomonas reinhardtii1[W][OA] , 2006, Plant Physiology.

[37]  S. Holtgrefe,et al.  Strategies to maintain redox homeostasis during photosynthesis under changing conditions. , 2005, Journal of experimental botany.

[38]  P. Shannon,et al.  Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks , 2003 .

[39]  Uwe Ligges,et al.  Scatterplot3d - an R package for visualizing multivariate data , 2003 .

[40]  K. Shimizu,et al.  Energetics and carbon metabolism during growth of microalgal cells under photoautotrophic, mixotrophic and cyclic light-autotrophic/dark-heterotrophic conditions. , 2000, Biochemical engineering journal.

[41]  C. Foyer,et al.  Homeostasis of adenylate status during photosynthesis in a fluctuating environment. , 2000, Journal of experimental botany.

[42]  W. Gross,et al.  Characterization of a sugar/polyol uptake system in the red alga Galdieria sulphuraria , 1999 .

[43]  M. Orús,et al.  Interactions between Glucose and Inorganic Carbon Metabolism in Chlorella vulgaris Strain UAM 101. , 1991, Plant physiology.

[44]  K. Kindle Expression of a gene for a light-harvesting chlorophyll a/b-binding protein in Chlamydomonas reinhardtii: effect of light and acetate , 1987, Plant Molecular Biology.

[45]  K. Steinmüller,et al.  Photo- and Metabolite Regulation of the Synthesis of Ribulose Bisphosphate Carboxylase/Oxygenase and the Phycobiliproteins in the Alga Cyanidium caldarium. , 1984, Plant physiology.

[46]  G. Freyssinet,et al.  Effect of Light on Glucose Utilization by Euglena gracilis. , 1980, Plant physiology.

[47]  G. Öquist,et al.  A Method for Studying Photosynthetic Capacities of Unicellular Algae Based on in vivo Chlorophyll Fluorescence , 1977 .

[48]  A. Fuggi,et al.  Studies on utilization of 2-ketoglutarate, glutamate and other amino acids by the unicellular alga Cyanidium caldarium , 1976, Archives of Microbiology.

[49]  J. Hobbie,et al.  THE UPTAKE OF GLUCOSE BY CHLAMYDOMONAS SP. 1 2 , 1972 .

[50]  R. Levine,et al.  Cytochrome f and plastocyanin: their sequence in the photosynthetic electron transport chain of Chlamydomonas reinhardi. , 1965, Proceedings of the National Academy of Sciences of the United States of America.

[51]  R. Sager,et al.  NUTRITIONAL STUDIES WITH CHLAMYDOMONAS REINHARDI , 1953, Annals of the New York Academy of Sciences.

[52]  M. Shishova,et al.  A possible molecular mechanism of Chlamydomonas reinhardtii adaptation to different trophic conditions , 2021, Protistology.

[53]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[54]  A. Weber,et al.  The chloroplastic 2-oxoglutarate/malate transporter has dual function as the malate valve and in carbon/nitrogen metabolism. , 2011, The Plant journal : for cell and molecular biology.

[55]  K. Noguchi,et al.  Interaction between photosynthesis and respiration in illuminated leaves. , 2008, Mitochondrion.

[56]  A. Weber,et al.  Antisense repression reveals a crucial role of the plastidic 2-oxoglutarate/malate translocator DiT1 at the interface between carbon and nitrogen metabolism. , 2006, The Plant journal : for cell and molecular biology.

[57]  R. Scheibe Malate valves to balance cellular energy supply. , 2004, Physiologia plantarum.