Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

M. Cotton | A. De Keyser | P. Zaccaria | S. Stocker | J. Spieth | Y.-J. Chuang | W. R. McCombie | R. Mache | M. de la Bastide | G. Volckaert | B. Obermaier | R. Wambutt | E. Defoor | L. Grivell | M. D. Haan | H. Mewes | B. Purnelle | M. Voet | G. Volckaert | T. Graves | M. Kay | T. Graves | E. Mardis | D. Frishman | J. Rogers | M. Dante | L. Fulton | L. Hillier | V. Beneš | E. Chen | M. Montagu | J. Kalicki | K. McLay | J. Spieth | W. Ansorge | M. Quail | J. Hoheisel | M. Marra | S. Hempel | P. Kötter | M. Rose | H. Blöcker | A. Düsterhöft | B. Obermaier | R. Wambutt | S. Heber | W. Zimmermann | R. Wilson | K. Pepin | J. Kramer | P. Minx | W. McCombie | N. Dedhia | M. Rajandream | M. Lyne | A. Cronin | R. Aert | J. Robben | B. Grymonprez | I. Weltjens | M. Rieger | M. Schäfer | C. Gabel | M. Fuchs | E. Holzer | H. Hilbert | T. Pohl | H. Wedler | R. Martienssen | D. Layman | P. Brandt | R. Mache | E. Chen | M. Scharfe | B. Fulton | M. Cordes | D. Borkova | P. Latreille | L. Courtney | J. Ali | K. Scott | E. Ryan | T. Stoneking | S. Aubourg | A. Lecharny | J. Abu-Threideh | K. Mayer | S. Stocker | G. Murphy | W. Stiekema | K. Entian | N. Terryn | K. Lemcke | D. Haase | M. Bevan | I. Bancroft | J. Murray | N. Miller | D. Johnson | K. Kemp | J. Nelson | A. Johnson | J. Terol | K. Schutz | S. Peters | C. Strong | M. Cotton | L. Spiegel | M. Kreis | M. Delseny | V. Simone | N. Lennard | B. Harris | G. Bothe | S. Müller-Auer | H. Du | M. Zidanic | C. Joshu | S. Bray-Allen | C. Bielke | M. V. Staveren | R. K. Lankhorst | M. Braun | M. Vandenbol | T. Weitzenegger | A. O'Shaughnessy | L. Gnoj | E. Casacuberta | M. Boutry | J. Hauf | M. Lodhi | P. Vos | R. Cooke | A. Argiriou | P. Puigdoménech | K. Habermann | D. Bentley | U. Ramsperger | C. Geisel | R. Villarroel | J. Cloud | R. Mayes | M. Bastide | J. Doggett | B. Fartmann | A. Brandt | M. Watson | R. Villarroel | F. Vandenbussche | L. Heijnen | P. Mooijman | Sindy Neumann | F. Vandenbussche | M. Scharfe | S. Bray-Allen | D. Johnson | M. Kay | H. Blöcker | J. Rogers | K.-D. Entian | P. Kötter | M. Rose | E. Huang | K. Jones | J. Cloud | S. Heber | A. Montfort | P. Puigdomenech | C. Schüller | M. Weichselgartner | M. Müller | T. Schmidtheini | B. Reichert | D. Portatelle | M. Perez-Alonso | P. Ridley | S. Langham | B. Mccullagh | L. Bilham | J. V. D. Schueren | Y. Chuang | M. Braeken | I. Bastiaens | W. Dirkse | S. Berneiser | M. Feldpausch | S. Lamberth | H. Daele | A. D. Keyser | C. Buysshaert | J. Gielen | R. D. Clercq | L. Clark | S. Hall | A. Pettett | S. Rechmann | M. Grimm | T. Löhnert | S. Dose | A. Maarse | K. Granderath | D. Dauner | A. Herzl | S. Neumann | D. Vitale | R. Liguori | E. Piravandi | O. Massenet | F. Quigley | G. Clabauld | A. Mündlein | R. Felber | S. Schnabl | R. Hiller | W. Schmidt | F. Chefdor | C. Berger | T. Gibbons | N. Weber | M. Bargues | A. Torres | A. Pérez-Pérez | E. Bent | S. Johnson | D. Tacon | T. Jesse | S. Schwarz | P. Scholler | P. Francs | P. Zaccaria | L. Parnell | M. Sehkon | P. Sheet | G. Harmon | J. Edwards | A. Abbott | T. Greco | S. Andrews | A. Berghoff | K. Drone | B. Antonoiu | H. Sun | B. Lamar | C. Yordán | P. Ma | J. Zhong | R. Preston | D. Vil | M. Shekher | A. Matero | R. Shah | I. Swaby | M. Rodriguez | J. Hoffman | S. Till | S. Granat | N. Shohdy | A. Hasegawa | A. Hameed | K. Mayer | M. Delseny | R. Preston | A. Cronin | A. Düsterhöft | K. Jones | M. Kreis | O. Massenet | F. Quigley | M.-A. Rajandream | K. McLay | B. Harris | L. Clark | J. Doggett | N. Lennard | R. Aert | M. Van Montagu | T. Jesse | C. Schüller | G. Murphy | T. Pohl | W. Stiekema | N. Terryn | W. Ansorge | P. Brandt | L. Grivell | M. Rieger | M. Weichselgartner | V. de Simone | M. Müller | M. Watson | T. Schmidtheini | B. Reichert | D. Portatelle | M. Perez-Alonso | M. Boutry | I. Bancroft | P. Vos | J. Hoheisel | W. Zimmermann | H. Wedler | P. Ridley | S.-A. Langham | B. McCullagh | L. Bilham | J. Robben | J. Van der Schueren | B. Grymonprez | M. Braeken | I. Weltjens | M. Voet | I. Bastiaens | E. Defoor | T. Weitzenegger | G. Bothe | U. Ramsperger | H. Hilbert | M. Braun | E. Holzer | A. Brandt | S. Peters | M. van Staveren | W. Dirkse | P. Mooijman | R. Klein Lankhorst | J. Hauf | S. Berneiser | S. Hempel | M. Feldpausch | S. Lamberth | H. Van den Daele | C. Buysshaert | J. Gielen | R. De Clercq | M. Quail | S. Hall | R. Mayes | A. Pettett | M. Lyne | V. Benes | S. Rechmann | D. Borkova | M. Grimm | T.-H. Löhnert | S. Dose | M. de Haan | A. Maarse | M. Schäfer | S. Müller-Auer | C. Gabel | M. Fuchs | B. Fartmann | K. Granderath | D. Dauner | A. Herzl | S. Neumann | A. Argiriou | D. Vitale | R. Liguori | E. Piravandi | G. Clabauld | A. Mündlein | R. Felber | S. Schnabl | R. Hiller | W. Schmidt | A. Lecharny | S. Aubourg | F. Chefdor | R. Cooke | C. Berger | A. Montfort | E. Casacuberta | T. Gibbons | N. Weber | M. Vandenbol | M. Bargues | J. Terol | A. Torres | A. Perez-Perez | B. Purnelle | E. Bent | S. Johnson | D. Tacon | L. Heijnen | S. Schwarz | P. Scholler | P. Francs | C. Bielke | D. Frishman | D. Haase | K. Lemcke | H. W. Mewes | M. Bevan | R. K. Wilson | K. Habermann | L. Parnell | N. Dedhia | L. Gnoj | K. Schutz | E. Huang | L. Spiegel | M. Sehkon | J. Murray | P. Sheet | M. Cordes | J. Abu-Threideh | T. Stoneking | J. Kalicki | T. Graves | G. Harmon | J. Edwards | P. Latreille | L. Courtney | A. Abbott | K. Scott | P. Minx | D. Bentley | B. Fulton | N. Miller | T. Greco | K. Kemp | J. Kramer | L. Fulton | E. Mardis | M. Dante | K. Pepin | L. Hillier | J. Nelson | E. Ryan | S. Andrews | C. Geisel | D. Layman | H. Du | J. Ali | A. Berghoff | K. Drone | C. Joshu | B. Antonoiu | M. Zidanic | C. Strong | H. Sun | B. Lamar | C. Yordan | P. Ma | J. Zhong | D. Vil | M. Shekher | A. Matero | R. Shah | I'K. Swaby | A. O'Shaughnessy | M. Rodriguez | J. Hoffman | S. Till | S. Granat | N. Shohdy | A. Hasegawa | A. Hameed | M. Lodhi | A. Johnson | E. Chen | M. Marra | R. Martienssen | A. Hameed | Jörg D. Hoheisel | P. Puigdomènech | M. Schäfer | M. Rodriguez | Hui Du | H. Sun | H. Sun | M. Cordes | M. Delseny | Daniel Layman | Joelle Kalicki | Kelsi Scott | M. Haan | A. Johnson | Johar Ali | Nicola J Lennard | K. Drone | Tina Graves

[1]  Eugen C. Buehler,et al.  Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana , 1999, Nature.

[2]  Alejandro A. Schäffer,et al.  IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices , 1999, Bioinform..

[3]  T. Hunter,et al.  The tyrosine kinase negative regulator c-Cbl as a RING-type, E2-dependent ubiquitin-protein ligase. , 1999, Science.

[4]  R. Gwilliam,et al.  The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum , 1999, Nature.

[5]  Sebastian Kloska,et al.  A complete BAC-based physical map of the Arabidopsis thaliana genome , 1999, Nature Genetics.

[6]  Marco Marra,et al.  A map for sequence analysis of the Arabidopsis thaliana genome , 1999, Nature Genetics.

[7]  X. Guan,et al.  Human artificial chromosomes generated by modification of a yeast artificial chromosome containing both human alpha satellite and single-copy DNA sequences. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[8]  G. Heijne,et al.  ChloroP, a neural network‐based method for predicting chloroplast transit peptides and their cleavage sites , 1999, Protein science : a publication of the Protein Society.

[9]  Dmitrij Frishman,et al.  MIPS: a database for genomes and protein sequences , 1999, Nucleic Acids Res..

[10]  Andrew Smith.  Genome sequence of the nematode C-elegans: A platform for investigating biology , 1998 .

[11]  S. Douglas,et al.  Plastid evolution: origins, diversity, trends. , 1998, Current opinion in genetics & development.

[12]  E V Koonin,et al.  Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. , 1998, Science.

[13]  J. Cherry,et al.  Arabidopsis thaliana: a model plant for genome analysis. , 1998, Science.

[14]  H. Jespersen,et al.  Widespread occurrence of a highly conserved RING‐H2 zinc finger motif in the model plant Arabidopsis thaliana , 1998, FEBS letters.

[15]  R. Dawe,et al.  Plant centromeres: structure and control. , 1998, Current opinion in plant biology.

[16]  I. Bancroft,et al.  BAC representation of two low-copy regions of the genome of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[17]  S. Armstrong,et al.  Cytogenetics for the model system Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[18]  P. Piffanelli,et al.  Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana , 1998, Nature.

[19]  G. Copenhaver,et al.  Assaying genome-wide recombination and centromere functions with Arabidopsis tetrads. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[20]  A. Hetherington,et al.  Encoding specificity in Ca2+ signalling systems , 1998 .

[21]  J. Berg.  Genome sequence of the nematode C. elegans: a platform for investigating biology. , 1998, Science.

[22]  Jonathan D. G. Jones,et al.  Novel Disease Resistance Specificities Result from Sequence Exchange between Tandemly Repeated Genes at the Cf-4/9 Locus of Tomato , 1997, Cell.

[23]  M Gerstein,et al.  A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure. , 1997, Journal of molecular biology.

[24]  E. Richards,et al.  Arabidopsis thaliana centromere regions: genetic map positions and repetitive DNA structure. , 1997, Genome research.

[25]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[26]  A. Klar,et al.  A recombinationally repressed region between mat2 and mat3 loci shares homology to centromeric repeats and regulates directionality of mating-type switching in fission yeast. , 1997, Genetics.

[27]  S. Karlin,et al.  Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.

[28]  Y. Nakamura,et al.  Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones. , 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

[29]  Peter G. Korning,et al.  Splice Site Prediction in Arabidopsis Thaliana Pre-mRNA by Combining Local and Global Sequence Information , 1996 .

[30]  P. Gamas,et al.  Use of a subtractive hybridization approach to identify new Medicago truncatula genes induced during root nodule development. , 1996, Molecular plant-microbe interactions : MPMI.

[31]  C. Pikaard,et al.  RFLP and physical mapping with an rDNA-specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4. , 1996, The Plant journal : for cell and molecular biology.

[32]  C. Pikaard,et al.  Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution. , 1996, The Plant journal : for cell and molecular biology.

[33]  P. Schnable,et al.  Meiotic recombination break points resolve at high rates at the 5' end of a maize coding sequence. , 1995, The Plant cell.

[34]  G. Karpen,et al.  Localization of centromere function in a drosophila minichromosome , 1995, Cell.

[35]  E. Nimmo,et al.  Mutations derepressing silent centromeric domains in fission yeast disrupt chromosome segregation. , 1995, Genes & development.

[36]  P. Vos,et al.  AFLP: a new technique for DNA fingerprinting. , 1995, Nucleic acids research.

[37]  Mark Borodovsky,et al.  Deriving Non-homogeneous DNA Markov Chain Models by Cluster Analysis Algorithm Minimizing Multiple Alignment Entropy , 1994, Comput. Chem..

[38]  C. Lister,et al.  Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana , 1993 .

[39]  John C. Wootton,et al.  Statistics of Local Complexity in Amino Acid Sequences and Sequence Databases , 1993, Comput. Chem..

[40]  E. Uberbacher,et al.  Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[41]  C. Burks,et al.  Identifying potential tRNA genes in genomic DNA sequences. , 1991, Journal of molecular biology.

[42]  H. Goodman,et al.  The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. , 1991, Nucleic acids research.

[43]  A. Lupas,et al.  Predicting coiled coils from protein sequences , 1991, Science.

[44]  F. Ausubel,et al.  Isolation of a higher eukaryotic telomere from Arabidopsis thaliana , 1988, Cell.

[45]  D. Lipman,et al.  Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[46]  C DeLisi,et al.  The detection and classification of membrane-spanning proteins. , 1985, Biochimica et biophysica acta.