Protein interactions with metallothionein-3 promote vectorial active transport in human proximal tubular cells

Metallothionein 3 (MT-3) is a small, cysteine-rich protein that binds to essential metals required for homeostasis, as well as to heavy metals that have the potential to exert toxic effects on cells. MT-3 is expressed by epithelial cells of the human kidney, including the cells of the proximal tubule. Our laboratory has previously shown that mortal cultures of human proximal tubular (HPT) cells express MT-3 and form domes in the cell monolayer, a morphological feature indicative of vectorial active transport, an essential function of the proximal tubule. However, an immortalized proximal tubular cell line HK-2 lacks the expression of MT-3 and fails to form domes in the monolayer. Transfection of HK-2 cells with the MT-3 gene restores dome formation in these cells suggesting that MT-3 is required for vectorial active transport. In order to determine how MT-3 imparts this essential feature to the proximal tubule, we sought to identify proteins that interact either directly or indirectly with MT-3. Using a combination of pulldowns, co-immunoprecipitations, and mass spectrometry analysis, putative protein interactants were identified and subsequently confirmed by Western analysis and confocal microscopy, following which proteins with direct physical interactions were investigated through molecular docking. Our data shows that MT-3 interacts with myosin-9, aldolase A, enolase 1, β-actin, and tropomyosin 3 and that these interactions are maximized at the periphery of the apical membrane of doming proximal tubule cells. Together these observations reveal that MT-3 interacts with proteins involved in cytoskeletal organization and energy metabolism, and these interactions at the apical membrane support vectorial active transport and cell differentiation in proximal tubule cultures.

[1]  Xiukun Lin,et al.  Enolase 1, a Moonlighting Protein, as a Potential Target for Cancer Treatment , 2021, International journal of biological sciences.

[2]  Oriol Vinyals,et al.  Highly accurate protein structure prediction with AlphaFold , 2021, Nature.

[3]  Dongqing Wei,et al.  Abrogation of SARS-CoV-2 interaction with host (NRP1) neuropilin-1 receptor through high-affinity marine natural compounds to curtail the infectivity: A structural-dynamics data , 2021, Computers in Biology and Medicine.

[4]  P. Chase,et al.  The structure of the native cardiac thin filament at systolic Ca2+ levels , 2021, Proceedings of the National Academy of Sciences.

[5]  A. Homma,et al.  Metallothionein-3 is a clinical biomarker for tissue zinc levels in nasal mucosa. , 2021, Auris, nasus, larynx.

[6]  L. Belyamani,et al.  Identifying epitopes for cluster of differentiation and design of new peptides inhibitors against human SARS-CoV-2 spike RBD by an in-silico approach , 2020, Heliyon.

[7]  D. Tolan,et al.  Actin filament‐ and Wiskott‐Aldrich syndrome protein‐binding sites on fructose‐1,6‐bisphosphate aldolase are functionally distinct from the active site , 2020, Cytoskeleton.

[8]  J. Koh,et al.  Metallothionein-3 as a multifunctional player in the control of cellular processes and diseases , 2020, Molecular Brain.

[9]  M. Fukuda,et al.  Rab family of small GTPases: an updated view on their regulation and functions , 2020, The FEBS journal.

[10]  Bishajit Sarkar,et al.  Exploiting the Reverse Vaccinology Approach to Design Novel Subunit Vaccine against Ebola Virus , 2020, medRxiv.

[11]  Dan Li,et al.  HawkDock: a web server to predict and analyze the protein–protein complex based on computational docking and MM/GBSA , 2019, Nucleic Acids Res..

[12]  L. Fraissinet-Tachet,et al.  Metallothionein diversity and distribution in the tree of life: a multifunctional protein. , 2018, Metallomics : integrated biometal science.

[13]  Radka Svobodová Vařeková,et al.  PDBsum: Structural summaries of PDB entries , 2017, Protein science : a publication of the Protein Society.

[14]  D. Petering,et al.  Proteomic High Affinity Zn2+ Trafficking: Where Does Metallothionein Fit in? , 2017, International journal of molecular sciences.

[15]  S. Garrett,et al.  The unique C- and N-terminal sequences of Metallothionein isoform 3 mediate growth inhibition and Vectorial active transport in MCF-7 cells , 2017, BMC Cancer.

[16]  Gabriele Meloni,et al.  Mammalian Metallothionein-3: New Functional and Structural Insights , 2017, International journal of molecular sciences.

[17]  F. Lightstone,et al.  A Comprehensive Docking and MM/GBSA Rescoring Study of Ligand Recognition upon Binding Antithrombin , 2017, Current topics in medicinal chemistry.

[18]  M. Zabel,et al.  Expression of metallothionein 3 in ductal breast cancer. , 2016, International journal of oncology.

[19]  Alexandre M. J. J. Bonvin,et al.  PRODIGY: a web server for predicting the binding affinity of protein-protein complexes , 2016, Bioinform..

[20]  A. Alli,et al.  Exosomal GAPDH from Proximal Tubule Cells Regulate ENaC Activity , 2016, PloS one.

[21]  S. Garrett,et al.  Elevated connexin 43 expression in arsenite-and cadmium-transformed human bladder cancer cells, tumor transplants and selected high grade human bladder cancers. , 2016, Experimental and toxicologic pathology : official journal of the Gesellschaft fur Toxikologische Pathologie.

[22]  Aleksey A. Porollo,et al.  IL-4 Induces Metallothionein 3- and SLC30A4-Dependent Increase in Intracellular Zn2+ that Promotes Pathogen Persistence in Macrophages , 2016, Cell reports.

[23]  Takuya Suzuki,et al.  Cellular zinc is required for intestinal epithelial barrier maintenance via the regulation of claudin-3 and occludin expression. , 2016, American journal of physiology. Gastrointestinal and liver physiology.

[24]  A. Sivaprasadarao,et al.  Reciprocal regulation of actin cytoskeleton remodelling and cell migration by Ca2+ and Zn2+: role of TRPM2 channels , 2016, Development.

[25]  T. Pollard Actin and Actin-Binding Proteins. , 2016, Cold Spring Harbor perspectives in biology.

[26]  Daniel A. Colón-Ramos,et al.  Glycolytic Enzymes Localize to Synapses under Energy Stress to Support Synaptic Function , 2016, Neuron.

[27]  J. Koh,et al.  Metallothionein-3 modulates the amyloid β endocytosis of astrocytes through its effects on actin polymerization , 2015, Molecular Brain.

[28]  S. Genheden,et al.  The MM/PBSA and MM/GBSA methods to estimate ligand-binding affinities , 2015, Expert opinion on drug discovery.

[29]  S. Garrett,et al.  Cadherin Expression, Vectorial Active Transport, and Metallothionein Isoform 3 Mediated EMT/MET Responses in Cultured Primary and Immortalized Human Proximal Tubule Cells , 2015, PloS one.

[30]  Yang Song,et al.  Fructose-Bisphosphate Aldolase A Is a Potential Metastasis-Associated Marker of Lung Squamous Cell Carcinoma and Promotes Lung Cell Tumorigenesis and Migration , 2014, PloS one.

[31]  P. Dzięgiel,et al.  Expression of metallothionein-III in patients with non-small cell lung cancer. , 2013, Anticancer research.

[32]  R. Kelishadi,et al.  Zinc and its importance for human health: An integrative review , 2013, Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences.

[33]  Janet M. Thornton,et al.  PROCHECK: validation of protein‐structure coordinates , 2012 .

[34]  F. Gourronc,et al.  Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis , 2012 .

[35]  J. Koh,et al.  Role of Zinc Metallothionein-3 (ZnMt3) in Epidermal Growth Factor (EGF)-induced c-Abl Protein Activation and Actin Polymerization in Cultured Astrocytes* , 2011, The Journal of Biological Chemistry.

[36]  D. Petering,et al.  Mammalian metallothionein in toxicology, cancer, and cancer chemotherapy , 2011, JBIC Journal of Biological Inorganic Chemistry.

[37]  C. Moskaluk,et al.  Location-Specific Epigenetic Regulation of the Metallothionein 3 Gene in Esophageal Adenocarcinomas , 2011, PloS one.

[38]  Gabriele Meloni,et al.  Chemistry and biology of mammalian metallothioneins , 2011, JBIC Journal of Biological Inorganic Chemistry.

[39]  Csaba Hetényi,et al.  Toward prediction of functional protein pockets using blind docking and pocket search algorithms , 2011, Protein science : a publication of the Protein Society.

[40]  Tingjun Hou,et al.  Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking , 2011, J. Comput. Chem..

[41]  I. Armitage,et al.  New Proteins Found Interacting with Brain Metallothionein-3 Are Linked to Secretion , 2010, International journal of Alzheimer's disease.

[42]  S. Garrett,et al.  SPARC gene expression is repressed in human urothelial cells (UROtsa) exposed to or malignantly transformed by cadmium or arsenite. , 2010, Toxicology letters.

[43]  S. Garrett,et al.  Absence of metallothionein 3 expression in breast cancer is a rare but favorable marker that is under epigenetic control , 2010, Toxicological and environmental chemistry.

[44]  F. Ni,et al.  Neuronal growth‐inhibitory factor (metallothionein‐3): structure–function relationships , 2010, The FEBS journal.

[45]  David S. Goodsell,et al.  AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility , 2009, J. Comput. Chem..

[46]  F. Ni,et al.  The structural and biological significance of the EAAEAE insert in the α‐domain of human neuronal growth inhibitory factor , 2009, The FEBS journal.

[47]  P. Verroust,et al.  Receptor-mediated endocytosis in renal proximal tubule , 2009, Pflügers Archiv - European Journal of Physiology.

[48]  W. Maret Metallothionein redox biology in the cytoprotective and cytotoxic functions of zinc , 2008, Experimental Gerontology.

[49]  S. Garrett,et al.  Cadmium, vectorial active transport, and MT-3-dependent regulation of cadherin expression in human proximal tubular cells. , 2008, Toxicological sciences : an official journal of the Society of Toxicology.

[50]  Ben M. Webb,et al.  Comparative Protein Structure Modeling Using MODELLER , 2007, Current protocols in protein science.

[51]  Z. Huang,et al.  Effect of α-domain substitution on the structure, property and function of human neuronal growth inhibitory factor , 2007, JBIC Journal of Biological Inorganic Chemistry.

[52]  F. Ni,et al.  Structural prediction of the β‐domain of metallothionein‐3 by molecular dynamics simulation , 2007 .

[53]  R. Dominguez A Common Binding Site for Actin-Binding Proteins on the Actin Surface , 2007 .

[54]  S. Garrett,et al.  The unique N-terminal sequence of metallothionein-3 is required to regulate the choice between apoptotic or necrotic cell death of human proximal tubule cells exposed to Cd+2. , 2006, Toxicological sciences : an official journal of the Society of Toxicology.

[55]  A. Ruszkiewicz,et al.  Metallothionien 3 expression is frequently down-regulated in oesophageal squamous cell carcinoma by DNA methylation , 2005, Molecular Cancer.

[56]  David W. Lahti,et al.  Identification of mouse brain proteins associated with isoform 3 of metallothionein , 2005, Protein science : a publication of the Protein Society.

[57]  Bernd Roschitzki,et al.  Zn7metallothionein-3 and the synaptic vesicle cycle: interaction of metallothionein-3 with the small GTPase Rab3A. , 2005, Biochemistry.

[58]  Roberto Dominguez,et al.  Actin-binding proteins--a unifying hypothesis. , 2004, Trends in biochemical sciences.

[59]  S. Garrett,et al.  Expression of metallothionein isoform 3 (MT-3) determines the choice between apoptotic or necrotic cell death in Cd+2-exposed human proximal tubule cells. , 2004, Toxicological sciences : an official journal of the Society of Toxicology.

[60]  András Fiser,et al.  ModLoop: automated modeling of loops in protein structures , 2003, Bioinform..

[61]  J. Koropatnick,et al.  Signaling events for metallothionein induction. , 2003, Mutation research.

[62]  J. Ji,et al.  Hypermethylation of metallothionein-3 CpG island in gastric carcinoma. , 2003, Carcinogenesis.

[63]  P. Coyle,et al.  Metallothionein: the multipurpose protein , 2002, Cellular and Molecular Life Sciences CMLS.

[64]  S. Garrett,et al.  Metallothionein isoform 3 and proximal tubule vectorial active transport. , 2002, Kidney international.

[65]  S. Garrett,et al.  Transient induction of metallothionein isoform 3 (MT-3), c-fos, c-jun and c-myc in human proximal tubule cells exposed to cadmium. , 2002, Toxicology letters.

[66]  S. Garrett,et al.  Metallothionein isoform 3 overexpression is associated with breast cancers having a poor prognosis. , 2001, The American journal of pathology.

[67]  D. Lamm,et al.  Metallothionein isoform 3 as a potential biomarker for human bladder cancer. , 2000, Environmental health perspectives.

[68]  S. Garrett,et al.  Metallothionein isoform 3 expression in the human prostate and cancer‐derived cell lines , 1999, The Prostate.

[69]  D. Sens,et al.  Tissue Culture of Human Renal Epithelial Cells Using a Defined Serum-Free Growth Formulation , 1999, Nephron Experimental Nephrology.

[70]  S. Garrett,et al.  Expression of MT-3 protein in the human kidney. , 1999, Toxicology letters.

[71]  M. Takigawa,et al.  Stimulatory effects of 4-methylcatechol, dopamine and levodopa on the expression of metallothionein-III (GIF) mRNA in immortalized mouse brain glial cells (VR-2g) , 1998, Brain Research.

[72]  I. Campbell,et al.  Transgenic expression of interleukin 6 in the central nervous system regulates brain metallothionein-I and -III expression in mice. , 1997, Brain research. Molecular brain research.

[73]  K. Hori,et al.  Mode of interactions of human aldolase isozymes with cytoskeletons. , 1997, Archives of biochemistry and biophysics.

[74]  S. Garrett,et al.  Expression of MT-3 mRNA in human kidney, proximal tubule cell cultures, and renal cell carcinoma. , 1997, Toxicology letters.

[75]  C. Klaassen,et al.  Effect of several metallothionein inducers on oxidative stress defense mechanisms in rats. , 1995, Toxicology.

[76]  R. Palmiter,et al.  Bioactivity of metallothionein-3 correlates with its novel beta domain sequence rather than metal binding properties. , 1995, Biochemistry.

[77]  F. Stennard,et al.  Characterisation of six additional human metallothionein genes. , 1994, Biochimica et biophysica acta.

[78]  R. Zager,et al.  HK-2: an immortalized proximal tubule epithelial cell line from normal adult human kidney. , 1994, Kidney international.

[79]  S. Tsuji,et al.  Molecular cloning of human growth inhibitory factor cDNA and its down‐regulation in Alzheimer's disease. , 1992, The EMBO journal.

[80]  R. Palmiter,et al.  MT-III, a brain-specific member of the metallothionein gene family. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[81]  K. Titani,et al.  The growth inhibitory factor that is deficient in the Alzheimer's disease brain is a 68 amino acid metallothionein-like protein , 1991, Neuron.

[82]  C. E. Hildebrand,et al.  Human metallothionein genes: structure of the functional locus at 16q13. , 1990, Genomics.

[83]  Julia E. Lever Inducers of Dome Formation in Epithelial Cell Cultures including Agents That Cause Differentiation , 1985 .

[84]  S. Spicer,et al.  Tissue culture of human kidney epithelial cells of proximal tubule origin. , 1984, Kidney international.