The Contained Self-Reactive Peripheral T Cell Repertoire: Size, Diversity, and Cellular Composition

Individual self-reactive T cells have been discovered in both humans and mice. It is difficult to assess the entire contained self-reactive peripheral T cell repertoire in healthy individuals because regulatory T cells (Tregs) can render these cells anergic and, therefore, functionally indistinguishable. We addressed this issue by removing regulatory T cells, thereby allowing us to characterize the exposed self-reactive T cells. This resulted in activation of approximately 4% of both CD4+ and CD8+ T cells. Activation and division of these cells was not a bystander product of Ag-independent signals but required TCR stimulation. Analysis of TCR sequences showed that these responding cells were polyclonal and encompassed a broad range of structural TCR diversity. Adoptive transfer of naive and effector/memory T cell populations showed that even the naive T cell pool contained self-reactive T cell precursors. In addition, transfer of mature thymocytes showed that this response was an intrinsic T cell property rather than a peripheral adaptation. Finally, we found that the unexpectedly strong contribution of the naive CD5low T cell pool showed that the overall self-reactive response has not only a diverse polyclonal TCR repertoire, but also comprises a broad range of affinities for self.

[1]  D. Sugiyama,et al.  Detection of self-reactive CD8+ T cells with an anergic phenotype in healthy individuals , 2014, Science.

[2]  A. Goldrath,et al.  The TCR’s sensitivity to self-peptide–MHC dictates the ability of naïve CD8+ T cells to respond to foreign antigens , 2014, Nature Immunology.

[3]  T. Nomura,et al.  Detection of T cell responses to a ubiquitous cellular protein in autoimmune disease , 2014, Science.

[4]  L. Klein,et al.  Positive and negative selection of the T cell repertoire: what thymocytes see (and don't see) , 2014, Nature Reviews Immunology.

[5]  Y. Kong,et al.  Opportunistic Autoimmune Disorders Potentiated by Immune-Checkpoint Inhibitors Anti-CTLA-4 and Anti-PD-1 , 2014, Front. Immunol..

[6]  Ryan Emerson,et al.  CTLA4 Blockade Broadens the Peripheral T-Cell Receptor Repertoire , 2014, Clinical Cancer Research.

[7]  A. Rudensky,et al.  Regulatory T Cell Ablation Causes Acute T Cell Lymphopenia , 2014, PloS one.

[8]  M. Schwartz,et al.  CNS-specific T cells shape brain function via the choroid plexus , 2013, Brain, Behavior, and Immunity.

[9]  C. Horak,et al.  Nivolumab plus ipilimumab in advanced melanoma. , 2013, The New England journal of medicine.

[10]  Ronald N Germain,et al.  T cell-positive selection uses self-ligand binding strength to optimize repertoire recognition of foreign antigens. , 2013, Immunity.

[11]  M. Groettrup,et al.  The immunoproteasome in antigen processing and other immunological functions. , 2013, Current opinion in immunology.

[12]  R. Schwartz,et al.  Subsets of nonclonal neighboring CD4+ T cells specifically regulate the frequency of individual antigen-reactive T cells. , 2012, Immunity.

[13]  M. Bevan,et al.  Autoreactive T cells bypass negative selection and respond to self-antigen stimulation during infection , 2012, The Journal of experimental medicine.

[14]  J. Kipnis,et al.  Pro-cognitive properties of T cells , 2012, Nature Reviews Immunology.

[15]  David C. Smith,et al.  Safety, activity, and immune correlates of anti-PD-1 antibody in cancer. , 2012, The New England journal of medicine.

[16]  M. Jenkins,et al.  The Role of Naive T Cell Precursor Frequency and Recruitment in Dictating Immune Response Magnitude , 2012, The Journal of Immunology.

[17]  A. Rudensky,et al.  Regulatory T cells: mechanisms of differentiation and function. , 2012, Annual review of immunology.

[18]  S. Jameson,et al.  Selection of self-reactive T cells in the thymus. , 2012, Annual review of immunology.

[19]  Nicole R. Cunningham,et al.  T cell receptor signal strength in Treg and iNKT cell development demonstrated by a novel fluorescent reporter mouse , 2011, The Journal of experimental medicine.

[20]  S. Mazmanian,et al.  Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System? , 2010, Science.

[21]  D. Schadendorf,et al.  Improved survival with ipilimumab in patients with metastatic melanoma. , 2010, The New England journal of medicine.

[22]  Stephan Wolf,et al.  Genome-wide high-throughput integrome analyses by nrLAM-PCR and next-generation sequencing , 2010, Nature Protocols.

[23]  D. Hafler,et al.  FOXP3+ regulatory T cells in the human immune system , 2010, Nature Reviews Immunology.

[24]  Keiji Tanaka,et al.  Thymoproteasome shapes immunocompetent repertoire of CD8+ T cells. , 2010, Immunity.

[25]  Kensuke Takada,et al.  Naive T cell homeostasis: from awareness of space to a sense of place , 2009, Nature Reviews Immunology.

[26]  Glinda S Cooper,et al.  Recent insights in the epidemiology of autoimmune diseases: improved prevalence estimates and understanding of clustering of diseases. , 2009, Journal of autoimmunity.

[27]  C. Benoist,et al.  How punctual ablation of regulatory T cells unleashes an autoimmune lesion within the pancreatic islets. , 2009, Immunity.

[28]  J. Wolchok,et al.  Self-antigen–specific CD8+ T cell precursor frequency determines the quality of the antitumor immune response , 2009, The Journal of experimental medicine.

[29]  S. Jameson,et al.  The nature of the lymphopenic environment dictates protective function of homeostatic-memory CD8+ T cells , 2008, Proceedings of the National Academy of Sciences.

[30]  Hanno Glimm,et al.  High-resolution insertion-site analysis by linear amplification–mediated PCR (LAM-PCR) , 2007, Nature Methods.

[31]  M. Tenenhaus,et al.  A role for human skin–resident T cells in wound healing , 2007, The Journal of experimental medicine.

[32]  A. Rudensky,et al.  Regulatory T cells prevent catastrophic autoimmunity throughout the lifespan of mice , 2007, Nature Immunology.

[33]  P. Doherty,et al.  Structural determinants of T-cell receptor bias in immunity , 2006, Nature Reviews Immunology.

[34]  A. Rudensky,et al.  Cellular mechanisms of fatal early-onset autoimmunity in mice with the T cell-specific targeting of transforming growth factor-beta receptor. , 2006, Immunity.

[35]  M. Bevan,et al.  T cells with low avidity for a tissue-restricted antigen routinely evade central and peripheral tolerance and cause autoimmunity. , 2006, Immunity.

[36]  M. Barcinski,et al.  Normal hematopoiesis is maintained by activated bone marrow CD4+ T cells. , 2005, Blood.

[37]  F. Ramsdell,et al.  An essential role for Scurfin in CD4+CD25+ T regulatory cells , 2003, Nature Immunology.

[38]  A. Rudensky,et al.  Foxp3 programs the development and function of CD4+CD25+ regulatory T cells , 2003, Nature Immunology.

[39]  J. Sprent,et al.  Cytokines and T-cell homeostasis. , 2003, Current opinion in immunology.

[40]  R. Germain,et al.  Self-recognition promotes the foreign antigen sensitivity of naive T lymphocytes , 2002, Nature.

[41]  E. Palmer,et al.  Quantifying the Frequency of Alloreactive T Cells In Vivo: New Answers to an Old Question1 , 2001, The Journal of Immunology.

[42]  A. Rudensky,et al.  Survival and Homeostatic Proliferation of Naive Peripheral CD4+ T Cells in the Absence of Self Peptide:MHC Complexes1 , 2000, The Journal of Immunology.

[43]  S. Jameson,et al.  Homeostatic expansion and phenotypic conversion of naïve T cells in response to self peptide/MHC ligands. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[44]  A. Grinberg,et al.  CD5 Expression Is Developmentally Regulated By T Cell Receptor (TCR) Signals and TCR Avidity , 1998, The Journal of experimental medicine.

[45]  J. Sprent,et al.  Type I Interferon-mediated Stimulation of T Cells by CpG DNA , 1998, Journal of Experimental Medicine.

[46]  W. Heath,et al.  Defective TCR expression in transgenic mice constructed using cDNA‐based α‐ and β‐chain genes under the control of heterologous regulatory elements , 1998, Immunology and cell biology.

[47]  A. Rudensky,et al.  Deficient positive selection of CD4 T cells in mice displaying altered repertoires of MHC class II-bound self-peptides. , 1997, Immunity.

[48]  C E Shannon,et al.  The mathematical theory of communication. 1963. , 1997, M.D. computing : computers in medical practice.

[49]  H. Griesser,et al.  Lymphoproliferative Disorders with Early Lethality in Mice Deficient in Ctla-4 , 1995, Science.

[50]  F. Alt,et al.  Interleukin-2 receptor alpha chain regulates the size and content of the peripheral lymphoid compartment. , 1995, Immunity.

[51]  H. Griesser,et al.  Deregulated T cell activation and autoimmunity in mice lacking interleukin-2 receptor beta. , 1995, Science.

[52]  A. B. Lyons,et al.  Determination of lymphocyte division by flow cytometry. , 1994, Journal of immunological methods.

[53]  A. Feller,et al.  Ulcerative colitis-like disease in mice with a disrupted interleukin-2 gene , 1993, Cell.

[54]  D. Mueller Mechanisms maintaining peripheral tolerance , 2010, Nature Immunology.

[55]  Naděžda Brdičková,et al.  CD69 acts downstream of interferon-alpha/beta to inhibit S1P1 and lymphocyte egress from lymphoid organs. , 2006, Nature.

[56]  Sang Joon Kim,et al.  A Mathematical Theory of Communication , 2006 .

[57]  Ray H. Baughman,et al.  Supporting Online Material , 2003 .

[58]  H. Ochs,et al.  The immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome (IPEX) is caused by mutations of FOXP3 , 2001, Nature Genetics.

[59]  D. Galas,et al.  Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse , 2001, Nature Genetics.

[60]  W. Bossert,et al.  The Measurement of Diversity , 2001 .

[61]  A. Llera,et al.  The structural basis of T cell activation by superantigens. , 1999, Annual review of immunology.