Automated artifact detection and removal for improved tensor estimation in motion-corrupted DTI data sets using the combination of local binary patterns and 2D partial least squares.

Signal variation in diffusion-weighted images (DWIs) is influenced both by thermal noise and by spatially and temporally varying artifacts, such as rigid-body motion and cardiac pulsation. Motion artifacts are particularly prevalent when scanning difficult patient populations, such as human infants. Although some motion during data acquisition can be corrected using image coregistration procedures, frequently individual DWIs are corrupted beyond repair by sudden, large amplitude motion either within or outside of the imaging plane. We propose a novel approach to identify and reject outlier images automatically using local binary patterns (LBP) and 2D partial least square (2D-PLS) to estimate diffusion tensors robustly. This method uses an enhanced LBP algorithm to extract texture features from a local texture feature of the image matrix from the DWI data. Because the images have been transformed to local texture matrices, we are able to extract discriminating information that identifies outliers in the data set by extending a traditional one-dimensional PLS algorithm to a two-dimension operator. The class-membership matrix in this 2D-PLS algorithm is adapted to process samples that are image matrix, and the membership matrix thus represents varying degrees of importance of local information within the images. We also derive the analytic form of the generalized inverse of the class-membership matrix. We show that this method can effectively extract local features from brain images obtained from a large sample of human infants to identify images that are outliers in their textural features, permitting their exclusion from further processing when estimating tensors using the DWIs. This technique is shown to be superior in performance when compared with visual inspection and other common methods to address motion-related artifacts in DWI data. This technique is applicable to correct motion artifact in other magnetic resonance imaging (MRI) techniques (e.g., the bootstrapping estimation) that use univariate or multivariate regression methods to fit MRI data to a pre-specified model.

[1]  A. Anderson,et al.  Reduction of noise in diffusion tensor images using anisotropic smoothing , 2005, Magnetic resonance in medicine.

[2]  P. Basser,et al.  A unifying theoretical and algorithmic framework for least squares methods of estimation in diffusion tensor imaging. , 2006, Journal of magnetic resonance.

[3]  A. Alexander,et al.  White matter tractography using diffusion tensor deflection , 2003, Human brain mapping.

[4]  Carl-Fredrik Westin,et al.  Image Processing for Diffusion Tensor Magnetic Resonance Imaging , 1999, MICCAI.

[5]  Guido Gerig,et al.  Quantification of Measurement Error in DTI: Theoretical Predictions and Validation , 2007, MICCAI.

[6]  Zhizhou Wang,et al.  A constrained variational principle for direct estimation and smoothing of the diffusion tensor field from complex DWI , 2004, IEEE Transactions on Medical Imaging.

[7]  C. Zou,et al.  2DCCA: A Novel Method for Small Sample Size Face Recognition , 2007, 2007 IEEE Workshop on Applications of Computer Vision (WACV '07).

[8]  Stuart Geman,et al.  Statistical methods for tomographic image reconstruction , 1987 .

[9]  Matti Pietikäinen,et al.  Multiresolution Gray-Scale and Rotation Invariant Texture Classification with Local Binary Patterns , 2002, IEEE Trans. Pattern Anal. Mach. Intell..

[10]  Jun Liu,et al.  The ellipsoidal area ratio: an alternative anisotropy index for diffusion tensor imaging. , 2009, Magnetic resonance imaging.

[11]  Grégoire Toussaint,et al.  Three dimensional texture analysis in MRI: a preliminary evaluation in gliomas. , 2003, Magnetic resonance imaging.

[12]  Nouchine Hadjikhani,et al.  A primer on diffusion tensor imaging of anatomical substructures. , 2003, Neurosurgical focus.

[13]  P. Barker,et al.  Diffusion magnetic resonance imaging: Its principle and applications , 1999, The Anatomical record.

[14]  Matti Pietikäinen,et al.  A comparative study of texture measures with classification based on featured distributions , 1996, Pattern Recognit..

[15]  B. S. Manjunath,et al.  Color and texture descriptors , 2001, IEEE Trans. Circuits Syst. Video Technol..

[16]  P. Basser,et al.  MR diffusion tensor spectroscopy and imaging. , 1994, Biophysical journal.

[17]  Matti Pietikäinen,et al.  Face Description with Local Binary Patterns: Application to Face Recognition , 2006, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[18]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[19]  S. Mori,et al.  Outlier Detection for Diffusion Tensor Imaging by testing for ADC Consistency , 2008 .

[20]  R. Edelman,et al.  Magnetic resonance imaging (2) , 1993, The New England journal of medicine.

[21]  Derek K. Jones,et al.  RESTORE: Robust estimation of tensors by outlier rejection , 2005, Magnetic resonance in medicine.

[22]  D L Parker,et al.  Comparison of gradient encoding schemes for diffusion‐tensor MRI , 2001, Journal of magnetic resonance imaging : JMRI.

[23]  P. Basser,et al.  Diffusion tensor MR imaging of the human brain. , 1996, Radiology.

[24]  M. Barker,et al.  Partial least squares for discrimination , 2003 .

[25]  D. Le Bihan,et al.  Diffusion tensor imaging: Concepts and applications , 2001, Journal of magnetic resonance imaging : JMRI.

[26]  Christopher Nimsky,et al.  Correction of susceptibility artifacts in diffusion tensor data using non-linear registration , 2007, Medical Image Anal..

[27]  Isabelle Bloch,et al.  Distortion correction and robust tensor estimation for MR diffusion imaging , 2002, Medical Image Anal..