Unreprogrammed H3K9me3 prevents minor zygotic genome activation and lineage commitment in SCNT embryos
暂无分享,去创建一个
Hong Wang | Cizhong Jiang | Shaorong Gao | Yanhong Zhao | Chong Li | Ruimin Xu | Xiaoyu Liu | Mo Chen | Qianshu Zhu | Lingyue Yang | X. Kou | Guang Yang | Shijun Shen | Xiaolei Zhang | Yuyan Zhao | Zhifei Shi | Qi Shi
[1] Hong Wang,et al. Stage-specific H3K9me3 occupancy ensures retrotransposon silencing in human pre-implantation embryos. , 2022, Cell stem cell.
[2] K. Shirahige,et al. Highly rigid H3.1/H3.2–H3K9me3 domains set a barrier for cell fate reprogramming in trophoblast stem cells , 2022, Genes & development.
[3] Cizhong Jiang,et al. Dux-Mediated Corrections of Aberrant H3K9ac during 2-Cell Genome Activation Optimize Efficiency of Somatic Cell Nuclear Transfer. , 2020, Cell stem cell.
[4] Chunling Bai,et al. Transient Dux expression facilitates nuclear transfer and induced pluripotent stem cell reprogramming , 2020, EMBO reports.
[5] Juan M. Vaquerizas,et al. Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3 , 2020, Nature Cell Biology.
[6] K. Nasmyth,et al. Analysis of Genome Architecture during SCNT Reveals a Role of Cohesin in Impeding Minor ZGA. , 2020, Molecular cell.
[7] Qi Zhou,et al. Overcoming Intrinsic H3K27me3 Imprinting Barriers Improves Post-implantation Development after Somatic Cell Nuclear Transfer. , 2020, Cell stem cell.
[8] Cizhong Jiang,et al. Chromatin architecture reorganization in murine somatic cell nuclear transfer embryos , 2020, Nature Communications.
[9] Robert C. Blanshard,et al. KDM4A regulates the maternal-to-zygotic transition by protecting broad H3K4me3 domains from H3K9me3 invasion in oocytes , 2020, Nature Cell Biology.
[10] I. Wilmut,et al. Nuclear Transfer , 2020, Definitions.
[11] Wei Cui,et al. MCRS1 is essential for epiblast development during early mouse embryogenesis. , 2020, Reproduction.
[12] Y. Modis,et al. Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing , 2019, Proceedings of the National Academy of Sciences.
[13] B. Garcia,et al. H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification , 2019, Science.
[14] Shaohua Xu,et al. Stella safeguards the oocyte methylome by preventing de novo methylation mediated by DNMT1 , 2018, Nature.
[15] A. Yasui,et al. DNMTs and SETDB1 function as co-repressors in MAX-mediated repression of germ cell–related genes in mouse embryonic stem cells , 2018, PloS one.
[16] Shogo Matoba,et al. Somatic Cell Nuclear Transfer Reprogramming: Mechanisms and Applications. , 2018, Cell stem cell.
[17] Shaorong Gao,et al. Inhibition of Aberrant DNA Re-methylation Improves Post-implantation Development of Somatic Cell Nuclear Transfer Embryos. , 2018, Cell stem cell.
[18] Jeannie T. Lee,et al. Loss of H3K27me3 Imprinting in Somatic Cell Nuclear Transfer Embryos Disrupts Post-Implantation Development. , 2018, Cell stem cell.
[19] Tsukasa Suzuki,et al. Reprogramming of Chromatin Accessibility in Somatic Cell Nuclear Transfer Is DNA Replication Independent , 2018, Cell reports.
[20] Chenfei Wang,et al. Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development , 2018, Nature Cell Biology.
[21] Hong Wang,et al. Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development , 2018, Nature Cell Biology.
[22] Yan Wang,et al. Cloning of Macaque Monkeys by Somatic Cell Nuclear Transfer , 2018, Cell.
[23] H. Madhani,et al. Ten principles of heterochromatin formation and function , 2017, Nature Reviews Molecular Cell Biology.
[24] G. Akkoyunlu,et al. DNMT1, DNMT3A and DNMT3B proteins are differently expressed in mouse oocytes and early embryos , 2017, Journal of Molecular Histology.
[25] G. Laible,et al. KDM4B-mediated reduction of H3K9me3 and H3K36me3 levels improves somatic cell reprogramming into pluripotency , 2017, Scientific Reports.
[26] S. Tapscott,et al. Conserved roles for murine DUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons , 2017, Nature Genetics.
[27] D. Trono,et al. A family of double-homeodomain transcription factors regulates zygotic genome activation in placental mammals , 2017, Nature Genetics.
[28] Stephen J. Tapscott,et al. Conservation and innovation in the DUX4-family gene network , 2017, Nature Genetics.
[29] Y. Zhang,et al. Allelic reprogramming of the histone modification H3K4me3 in early mammalian development , 2016, Nature.
[30] Yong Zhang,et al. Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos , 2016, Nature.
[31] Jeffrey T Leek,et al. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown , 2016, Nature Protocols.
[32] H. Nakauchi,et al. Spatiotemporal Reconstruction of the Human Blastocyst by Single-Cell Gene-Expression Analysis Informs Induction of Naive Pluripotency. , 2016, Developmental cell.
[33] W. Liu,et al. Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing , 2016, Cell Discovery.
[34] S. Salzberg,et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads , 2015, Nature Biotechnology.
[35] Mohammad M. Karimi,et al. An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations , 2015, Nature Communications.
[36] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[37] Shogo Matoba,et al. Embryonic Development following Somatic Cell Nuclear Transfer Impeded by Persisting Histone Methylation , 2014, Cell.
[38] I. Wilmut,et al. "Viable Offspring Derived from Fetal and Adult Mammalian Cells" (1997), by Ian Wilmut et al. , 2014 .
[39] J. Martens,et al. Suv39h-dependent H3K9me3 marks intact retrotransposons and silences LINE elements in mouse embryonic stem cells. , 2014, Molecular cell.
[40] Fidel Ramírez,et al. MOF-associated complexes ensure stem cell identity and Xist repression , 2014, eLife.
[41] Wei Li,et al. Programming and Inheritance of Parental DNA Methylomes in Mammals , 2014, Cell.
[42] Fidel Ramírez,et al. deepTools: a flexible platform for exploring deep-sequencing data , 2014, Nucleic Acids Res..
[43] Åsa K. Björklund,et al. Full-length RNA-seq from single cells using Smart-seq2 , 2014, Nature Protocols.
[44] S. Mitalipov,et al. Human Embryonic Stem Cells Derived by Somatic Cell Nuclear Transfer , 2013, Cell.
[45] S. Pfaff,et al. Transposable elements as genetic regulatory substrates in early development. , 2013, Trends in cell biology.
[46] Y. Matsui,et al. Max is a repressor of germ cell-related gene expression in mouse embryonic stem cells , 2013, Nature Communications.
[47] Kimiko Inoue,et al. Recent advancements in cloning by somatic cell nuclear transfer , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[48] J. Whetstine,et al. Histone lysine methylation dynamics: establishment, regulation, and biological impact. , 2012, Molecular cell.
[49] Greg Donahue,et al. Facilitators and Impediments of the Pluripotency Reprogramming Factors' Initial Engagement with the Genome , 2012, Cell.
[50] K. Baek,et al. Embryonic Demise Caused by Targeted Disruption of a Cysteine Protease Dub-2 , 2012, PloS one.
[51] Guangchuang Yu,et al. clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.
[52] Steven J. M. Jones,et al. DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs. , 2011, Cell stem cell.
[53] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[54] Yong Cai,et al. Subunit Organization of the Human INO80 Chromatin Remodeling Complex , 2011, The Journal of Biological Chemistry.
[55] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer , 2011, Nature Biotechnology.
[56] M. Torres-Padilla,et al. Epigenetic reprogramming and development: a unique heterochromatin organization in the preimplantation mouse embryo. , 2010, Briefings in functional genomics.
[57] S. Kishigami,et al. Effect of Trichostatin A on Chromatin Remodeling, Histone Modifications, DNA Replication, and Transcriptional Activity in Cloned Mouse Embryos1 , 2010, Biology of reproduction.
[58] H. Blau,et al. Nuclear reprogramming to a pluripotent state by three approaches , 2010, Nature.
[59] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[60] S. Murray,et al. myc maintains embryonic stem cell pluripotency and self-renewal. , 2010, Differentiation; research in biological diversity.
[61] Annick Harel-Bellan,et al. A subset of the histone H3 lysine 9 methyltransferases Suv39h1, G9a, GLP, and SETDB1 participate in a multimeric complex. , 2010, Molecular cell.
[62] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[63] M. Torres-Padilla,et al. Epigenetic reprogramming in mammalian reproduction: Contribution from histone variants , 2009, Epigenetics.
[64] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[65] S. Orkin,et al. PRC1 and Suv39h specify parental asymmetry at constitutive heterochromatin in early mouse embryos , 2008, Nature Genetics.
[66] Shaorong Gao,et al. Dynamic Reprogramming of Histone Acetylation and Methylation in the First Cell Cycle of Cloned Mouse Embryos1 , 2007, Biology of reproduction.
[67] G. Falco,et al. Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells. , 2007, Developmental biology.
[68] H. Lewin,et al. Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning , 2007, Nature Genetics.
[69] Toru Suzuki,et al. Zygotically activated genes are suppressed in mouse nuclear transferred embryos. , 2006, Cloning and stem cells.
[70] J. Gurdon. From nuclear transfer to nuclear reprogramming: the reversal of cell differentiation. , 2006, Annual review of cell and developmental biology.
[71] J. F. Burrows,et al. The DUB/USP17 deubiquitinating enzymes, a multigene family within a tandemly repeated sequence. , 2005, Genomics.
[72] A. Evsikov,et al. Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. , 2004, Developmental cell.
[73] Andrew J. Bannister,et al. Consequences of the depletion of zygotic and embryonic enhancer of zeste 2 during preimplantation mouse development , 2003, Development.
[74] R. Schultz,et al. The molecular foundations of the maternal to zygotic transition in the preimplantation embryo. , 2002, Human reproduction update.
[75] G. Maul,et al. SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins. , 2002, Genes & development.
[76] Karl Mechtler,et al. Loss of the Suv39h Histone Methyltransferases Impairs Mammalian Heterochromatin and Genome Stability , 2001, Cell.
[77] Karl Mechtler,et al. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins , 2001, Nature.
[78] R. DePinho,et al. Essential role for Max in early embryonic growth and development. , 2000, Genes & development.
[79] Maurizio Zuccotti,et al. Full-term development of mice from enucleated oocytes injected with cumulus cell nuclei , 1998, Nature.
[80] N. Copeland,et al. DUB-2 Is a Member of a Novel Family of Cytokine-inducible Deubiquitinating Enzymes* , 1997, The Journal of Biological Chemistry.
[81] M. Carroll,et al. DUB-1, a deubiquitinating enzyme with growth-suppressing activity. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[82] A. Bradley,et al. A null c-myc mutation causes lethality before 10.5 days of gestation in homozygotes and reduced fertility in heterozygous female mice. , 1993, Genes & development.
[83] V. Stewart,et al. Embryonic lethality in mice homozygous for a targeted disruption of the N-myc gene. , 1992, Genes & development.
[84] J. Gurdon,et al. The developmental capacity of nuclei taken from intestinal epithelium cells of feeding tadpoles. , 1962, Journal of embryology and experimental morphology.
[85] K. Zaret,et al. H3K9me3-Dependent Heterochromatin: Barrier to Cell Fate Changes. , 2016, Trends in genetics : TIG.
[86] Wenhao Yu,et al. Supplementary material , 2015 .
[87] Ira M. Hall,et al. BEDTools: a flexible suite of utilities for comparing genomic features , 2010, Bioinform..
[88] Claude-Alain H. Roten,et al. Fast and accurate short read alignment with Burrows–Wheeler transform , 2009, Bioinform..