Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases
暂无分享,去创建一个
[1] F. Meins. RNA degradation and models for post-transcriptional gene silencing , 2000, Plant Molecular Biology.
[2] L. Iyer,et al. Transgene silencing in monocots , 2000, Plant Molecular Biology.
[3] C. Llave,et al. Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNA , 2002, Science.
[4] G. Hutvagner,et al. A microRNA in a Multiple-Turnover RNAi Enzyme Complex , 2002, Science.
[5] C. Dennis. Gene regulation: The brave new world of RNA , 2002, Nature.
[6] S. Andersson,et al. Small RNAs in Rickettsia: are they functional? , 2002, Trends in genetics : TIG.
[7] Eugene V Koonin,et al. Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP‐ATPase nucleotide‐binding domains: implications for protein evolution in the RNA world , 2002, Proteins.
[8] M. A. Rector,et al. Endogenous and Silencing-Associated Small RNAs in Plants Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003210. , 2002, The Plant Cell Online.
[9] B. Reinhart,et al. MicroRNAs in plants. , 2002, Genes & development.
[10] S. Yokoyama,et al. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution , 2002, Nature.
[11] E. Koonin,et al. Trends in protein evolution inferred from sequence and structure analysis. , 2002, Current opinion in structural biology.
[12] Paul Ahlquist,et al. RNA-Dependent RNA Polymerases, Viruses, and RNA Silencing , 2002, Science.
[13] Eugene V Koonin,et al. Comparative genomics and evolution of proteins involved in RNA metabolism. , 2002, Nucleic acids research.
[14] A. Pasquinelli,et al. MicroRNAs: deviants no longer. , 2002, Trends in genetics : TIG.
[15] D. Baulcombe,et al. Spreading of RNA Targeting and DNA Methylation in RNA Silencing Requires Transcription of the Target Gene and a Putative RNA-Dependent RNA Polymerase Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010480. , 2002, The Plant Cell Online.
[16] Detlef D. Leipe,et al. Classification and evolution of P-loop GTPases and related ATPases. , 2002, Journal of molecular biology.
[17] Patrick Cramer,et al. Multisubunit RNA polymerases. , 2002, Current opinion in structural biology.
[18] T. Steck,et al. RNAi in Dictyostelium: the role of RNA-directed RNA polymerases and double-stranded RNase. , 2002, Molecular biology of the cell.
[19] Patrick Cramer,et al. Structural basis of transcription: α-Amanitin–RNA polymerase II cocrystal at 2.8 Å resolution , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[20] Nick V Grishin,et al. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. , 2002, Nucleic acids research.
[21] G. Macino,et al. 9 Quelling in Neurospora crassa , 2002 .
[22] C. Mello,et al. RNAi (Nematodes: Caenorhabditis elegans). , 2002, Advances in genetics.
[23] Patrick Cramer,et al. Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution. , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[24] G. Macino,et al. Quelling in Neurospora crassa. , 2002, Advances in genetics.
[25] Tim J. P. Hubbard,et al. SCOP database in 2002: refinements accommodate structural genomics , 2002, Nucleic Acids Res..
[26] E. Koonin,et al. Common Origin of Four Diverse Families of Large Eukaryotic DNA Viruses , 2001, Journal of Virology.
[27] S. Eddy. Non–coding RNA genes and the modern RNA world , 2001, Nature Reviews Genetics.
[28] E. Koonin,et al. Eukaryotic DNA Polymerases: Proposal for a Revised Nomenclature* , 2001, The Journal of Biological Chemistry.
[29] K. Nishikura,et al. A Short Primer on RNAi RNA-Directed RNA Polymerase Acts as a Key Catalyst , 2001, Cell.
[30] Titia Sijen,et al. On the Role of RNA Amplification in dsRNA-Triggered Gene Silencing , 2001, Cell.
[31] T. Tuschl,et al. Identification of Novel Genes Coding for Small Expressed RNAs , 2001, Science.
[32] S. Eddy,et al. Computational identification of noncoding RNAs in E. coli by comparative genomics , 2001, Current Biology.
[33] Thomas L. Madden,et al. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. , 2001, Nucleic acids research.
[34] G. Storz,et al. Identification of novel small RNAs using comparative genomics and microarrays. , 2001, Genes & development.
[35] P. Cramer,et al. Structural Basis of Transcription: RNA Polymerase II at 2.8 Ångstrom Resolution , 2001, Science.
[36] P. Cramer,et al. Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution , 2001, Science.
[37] E V Koonin,et al. Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. , 2001, Journal of molecular biology.
[38] S. Bell,et al. Mechanism and regulation of transcription in archaea. , 2001, Current opinion in microbiology.
[39] N. Grishin,et al. GGDEF domain is homologous to adenylyl cyclase , 2001, Proteins.
[40] R. Ebright. RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II. , 2000, Journal of molecular biology.
[41] G. Macino,et al. Post-transcriptional gene silencing across kingdoms. , 2000, Current opinion in genetics & development.
[42] A. Fire,et al. Functional anatomy of a dsRNA trigger: differential requirement for the two trigger strands in RNA interference. , 2000, Molecular cell.
[43] M. Goodman,et al. The expanding polymerase universe , 2000, Nature Reviews Molecular Cell Biology.
[44] E. Koonin,et al. Bacterial homologs of the small subunit of eukaryotic DNA primase. , 2000, Journal of Molecular Microbiology and Biotechnology.
[45] D. Higgins,et al. T-Coffee: A novel method for fast and accurate multiple sequence alignment. , 2000, Journal of molecular biology.
[46] J. Kuriyan,et al. A TOPRIM domain in the crystal structure of the catalytic core of Escherichia coli primase confirms a structural link to DNA topoisomerases. , 2000, Journal of molecular biology.
[47] Philippe Mourrain,et al. Arabidopsis SGS2 and SGS3 Genes Are Required for Posttranscriptional Gene Silencing and Natural Virus Resistance , 2000, Cell.
[48] S. Bell,et al. The Role of Transcription Factor B in Transcription Initiation and Promoter Clearance in the Archaeon Sulfolobus acidocaldarius * , 2000, The Journal of Biological Chemistry.
[49] J. Berger,et al. Structure of the RNA polymerase domain of E. coli primase. , 2000, Science.
[50] P. Sharp,et al. RNAi Double-Stranded RNA Directs the ATP-Dependent Cleavage of mRNA at 21 to 23 Nucleotide Intervals , 2000, Cell.
[51] S. Hammond,et al. An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells , 2000, Nature.
[52] S. Hahn,et al. The zinc ribbon domains of the general transcription factors TFIIB and Brf: conserved functional surfaces but different roles in transcription initiation. , 2000, Genes & development.
[53] T. Härd,et al. The solution structure of ribosomal protein L36 from Thermus thermophilus reveals a zinc-ribbon-like fold. , 2000, Journal of molecular biology.
[54] T. Steitz,et al. Insights into transcription: structure and function of single-subunit DNA-dependent RNA polymerases. , 2000, Current opinion in structural biology.
[55] C. Carles,et al. A Novel Subunit of Yeast RNA Polymerase III Interacts with the TFIIB-Related Domain of TFIIIB70 , 2000, Molecular and Cellular Biology.
[56] J. Omichinski,et al. Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription , 2000, Protein science : a publication of the Protein Society.
[57] E. Koonin,et al. DNA-binding proteins and evolution of transcription regulation in the archaea. , 1999, Nucleic acids research.
[58] M. Carmell,et al. Posttranscriptional Gene Silencing in Plants , 2006 .
[59] M. Van Montagu,et al. Posttranscriptional gene silencing of gn1 in tobacco triggers accumulation of truncated gn1-derived RNA species. , 1999, RNA.
[60] K. Severinov,et al. Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 Å Resolution , 1999, Cell.
[61] K. Mizuguchi,et al. N-ethylmaleimide-sensitive fusion protein (NSF) and CDC48 confirmed as members of the double-psi beta-barrel aspartate decarboxylase/formate dehydrogenase family. , 1999, Structure.
[62] Detlef D. Leipe,et al. Did DNA replication evolve twice independently? , 1999, Nucleic acids research.
[63] A. Fire,et al. RNA-triggered gene silencing. , 1999, Trends in genetics : TIG.
[64] G. Macino,et al. Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase , 1999, Nature.
[65] G. Wagner,et al. Structure and interactions of the translation initiation factor eIF1 , 1999, The EMBO journal.
[66] E. Koonin,et al. Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. , 1999, Journal of molecular biology.
[67] E V Koonin,et al. DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history. , 1999, Nucleic acids research.
[68] L. Aravind,et al. Novel Predicted RNA-Binding Domains Associated with the Translation Machinery , 1999, Journal of Molecular Evolution.
[69] Kenji Mizuguchi,et al. A six-stranded double-psi β barrel is shared by several protein superfamilies , 1999 .
[70] W. Baumeister,et al. The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element. , 1999, Current biology : CB.
[71] T L Blundell,et al. A six-stranded double-psi beta barrel is shared by several protein superfamilies. , 1999, Structure.
[72] H. L. Sänger,et al. Isolation of an RNA-Directed RNA Polymerase–Specific cDNA Clone from Tomato , 1998, Plant Cell.
[73] D. Landsman,et al. AT-hook motifs identified in a wide variety of DNA-binding proteins. , 1998, Nucleic acids research.
[74] Detlef D. Leipe,et al. Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. , 1998, Nucleic acids research.
[75] Thomas L. Madden,et al. Protein sequence similarity searches using patterns as seeds. , 1998, Nucleic acids research.
[76] A. Fire,et al. Double-stranded RNA as a mediator in sequence-specific genetic silencing and co-suppression. , 1998, Trends in genetics : TIG.
[77] C. Woese. The universal ancestor. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[78] A. Murzin. How far divergent evolution goes in proteins. , 1998, Current opinion in structural biology.
[79] B. Kaine,et al. High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases. , 1998, Structure.
[80] Chris Sander,et al. Touring protein fold space with Dali/FSSP , 1998, Nucleic Acids Res..
[81] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[82] Peter Willett,et al. A polymerase I palm in adenylyl cyclase? , 1997, Nature.
[83] Eugene V. Koonin,et al. SEALS: A System for Easy Analysis of Lots of Sequences , 1997, ISMB.
[84] D. Lipman,et al. Extracting protein alignment models from the sequence database. , 1997, Nucleic acids research.
[85] T R Hughes,et al. Reverse transcriptase motifs in the catalytic subunit of telomerase. , 1997, Science.
[86] June Corwin,et al. Telomerase Catalytic Subunit Homologs from Fission Yeast and Human , 1997 .
[87] N. Guex,et al. SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling , 1997, Electrophoresis.
[88] Chris Sander,et al. Dali/FSSP classification of three-dimensional protein folds , 1997, Nucleic Acids Res..
[89] P. Sigler,et al. Structure of the oligomerization and L-arginine binding domain of the arginine repressor of Escherichia coli. , 1996, Journal of molecular biology.
[90] Chris Sander,et al. DNA polymerase β belongs to an ancient nucleotidyltransferase superfamily , 1995 .
[91] P. Thuriaux,et al. A universally conserved region of the largest subunit participates in the active site of RNA polymerase III. , 1995, The EMBO journal.
[92] Jun S. Liu,et al. Gibbs motif sampling: Detection of bacterial outer membrane protein repeats , 1995, Protein science : a publication of the Protein Society.
[93] P. Baumann,et al. Transcription: new insights from studies on Archaea. , 1995, Trends in genetics : TIG.
[94] E. Koonin,et al. Identification of the Primase Active Site of the Herpes Simplex Virus Type 1 Helicase-Primase (*) , 1995, The Journal of Biological Chemistry.
[95] C Sander,et al. DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily. , 1995, Trends in biochemical sciences.
[96] John C. Wootton,et al. Non-globular Domains in Protein Sequences: Automated Segmentation Using Complexity Measures , 1994, Comput. Chem..
[97] A. Passarelli,et al. A baculovirus gene involved in late gene expression predicts a large polypeptide with a conserved motif of RNA polymerases , 1994, Journal of virology.
[98] Burkhard Rost,et al. PHD - an automatic mail server for protein secondary structure prediction , 1994, Comput. Appl. Biosci..
[99] A. Passarelli,et al. Identification of genes encoding late expression factors located between 56.0 and 65.4 map units of the Autographa californica nuclear polyhedrosis virus genome. , 1993, Virology.
[100] B. Rost,et al. Prediction of protein secondary structure at better than 70% accuracy. , 1993, Journal of molecular biology.
[101] H. L. Sänger,et al. RNA-directed RNA polymerase from tomato leaves. I. Purification and physical properties. , 1993, The Journal of biological chemistry.
[102] Alexey G. Murzin. Familiar Strangers , 2019, Twelve Weeks to Change a Life.
[103] P. Kraulis. Similarity of protein G and ubiquitin. , 1991, Science.
[104] P. Kraulis. A program to produce both detailed and schematic plots of protein structures , 1991 .
[105] G D Schuler,et al. A workbench for multiple alignment construction and analysis , 1991, Proteins.
[106] P Argos,et al. An attempt to unify the structure of polymerases. , 1990, Protein engineering.
[107] I Sauvaget,et al. Identification of four conserved motifs among the RNA‐dependent polymerase encoding elements. , 1989, The EMBO journal.
[108] P Argos,et al. A sequence motif in many polymerases. , 1988, Nucleic acids research.
[109] R. Young,et al. Prokaryotic and eukaryotic RNA polymerases have homologous core subunits. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[110] P. Argos,et al. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. , 1984, Nucleic acids research.
[111] A. Lehninger. Principles of Biochemistry , 1984 .
[112] P. Kitcher. Species , 1984, Philosophy of Science.
[113] H. Fraenkel-conrat,et al. Characterization of the RNA-dependent RNA polymerase of tobacco leaves. , 1979, The Journal of biological chemistry.
[114] S. Astier-Manifacier,et al. RNA-dependent RNA polymerase in Chinese cabbage. , 1971, Biochimica et biophysica acta.
[115] S. Astier-Manifacier,et al. [RNA-dependent RNA-polymerase in Brassica chinensis L]. , 1970, Comptes rendus hebdomadaires des seances de l'Academie des sciences. Serie D: Sciences naturelles.