OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.

OneDep, a unified system for deposition, biocuration, and validation of experimentally determined structures of biological macromolecules to the PDB archive, has been developed as a global collaboration by the worldwide PDB (wwPDB) partners. This new system was designed to ensure that the wwPDB could meet the evolving archiving requirements of the scientific community over the coming decades. OneDep unifies deposition, biocuration, and validation pipelines across all wwPDB, EMDB, and BMRB deposition sites with improved focus on data quality and completeness in these archives, while supporting growth in the number of depositions and increases in their average size and complexity. In this paper, we describe the design, functional operation, and supporting infrastructure of the OneDep system, and provide initial performance assessments.

Naohiro Kobayashi | Haruki Nakamura | Zukang Feng | Abhik Mukhopadhyay | Sameer Velankar | Huanwang Yang | Ezra Peisach | Ardan Patwardhan | Chenghua Shao | Gerard J Kleywegt | Helen M Berman | Sutapa Ghosh | Vladimir Guranovic | Lihua Tan | Reiko Yamashita | Guanghua Gao | John L Markley | Eldon L Ulrich | Irina Persikova | Yasuyo Ikegawa | Minyu Chen | Sanchayita Sen | Reiko Igarashi | Yuhe Liang | Swanand Gore | Stephen K Burley | John D Westbrook | Martha Quesada | Aleksandras Gutmanas | Catherine L Lawson | Luana Rinaldi | David R. Armstrong | Lora Mak | Jasmine Y Young | Dimitris Dimitropoulos | Glen van Ginkel | Steve Mading | Raul Sala | Thomas J Oldfield | David R Armstrong | John M Berrisford | Li Chen | Luigi Di Costanzo | Pieter M S Hendrickx | Brian P Hudson | M Saqib Mir | Eduardo Sanz-Garcia | Monica R Sekharan | G Jawahar Swaminathan | Marina A Zhuravleva | G. J. Swaminathan | H. Berman | G. Kleywegt | J. Westbrook | Haruki Nakamura | S. Burley | A. Patwardhan | L. Mak | S. Velankar | Zukang Feng | E. Ulrich | J. Markley | D. Dimitropoulos | Huanwang Yang | Jasmine Y. Young | C. Lawson | T. Oldfield | Li Chen | E. Peisach | S. Sen | A. Gutmanas | N. Kobayashi | S. Gore | Steve Mading | E. Sanz-García | Sutapa Ghosh | B. Hudson | L. D. Di Costanzo | A. Mukhopadhyay | C. Shao | Irina Persikova | P. Hendrickx | Yuhe Liang | J. Berrisford | L. Rinaldi | Yasuyo Ikegawa | Monica Sekharan | Vladimir Guranovic | Raul Sala | M. Zhuravleva | R. Yamashita | Martha Quesada | Lihua Tan | G. van Ginkel | Reiko Igarashi | Minyu Chen | Guanghua Gao | M. Mir | G. Swaminathan | D. Armstrong | Luana Rinaldi | Sanchayita Sen

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