Distributed smoothed tree kernel for protein-protein interaction extraction from the biomedical literature
暂无分享,去创建一个
Jeyakumar Natarajan | Sabenabanu Abdulkadhar | Gurusamy Murugesan | J. Natarajan | Sabenabanu Abdulkadhar | Gurusamy Murugesan
[1] Chee Keong Kwoh,et al. Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model , 2006, International Conference on Computational Science.
[2] Alexander J. Smola,et al. Fast Kernels for String and Tree Matching , 2002, NIPS.
[3] Hao Yu,et al. Discovering patterns to extract protein-protein interactions from full texts , 2004, Bioinform..
[4] Alessandro Moschitti,et al. Making Tree Kernels Practical for Natural Language Learning , 2006, EACL.
[5] Ren Long,et al. iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework , 2016, Bioinform..
[6] David Haussler,et al. Convolution kernels on discrete structures , 1999 .
[7] Xianpei Han,et al. A Feature-Enriched Tree Kernel for Relation Extraction , 2014, ACL.
[8] Dan Klein,et al. Accurate Unlexicalized Parsing , 2003, ACL.
[9] Xiao Zhang,et al. Multiple kernel learning in protein-protein interaction extraction from biomedical literature , 2011, Artif. Intell. Medicine.
[10] Zhenchao Jiang,et al. An approach to improve kernel-based Protein-Protein Interaction extraction by learning from large-scale network data. , 2015, Methods.
[11] Jun'ichi Tsujii,et al. Syntactic Features for Protein-Protein Interaction Extraction , 2007, LBM.
[12] Kalpana Raja,et al. PPInterFinder—a mining tool for extracting causal relations on human proteins from literature , 2013, Database J. Biol. Databases Curation.
[13] Hady Wirawan Lauw,et al. A Convolution Kernel Approach to Identifying Comparisons in Text , 2015, ACL.
[14] Jihoon Yang,et al. Data and text mining Kernel approaches for genic interaction extraction , 2008 .
[15] Claire Nédellec,et al. Learning Language in Logic - Genic Interaction Extraction Challenge , 2005 .
[16] Guodong Zhou,et al. Dependency-Driven Feature-based Learning for Extracting Protein-Protein Interactions from Biomedical Text , 2010, COLING.
[17] Ted Kwartler. The OpenNLP Project , 2017 .
[18] Jun'ichi Tsujii,et al. Data and text mining , 2005 .
[19] Javad Zahiri,et al. Computational Prediction of Protein–Protein Interaction Networks: Algo-rithms and Resources , 2013, Current genomics.
[20] Zhenchao Jiang,et al. Integrating Semantic Information into Multiple Kernels for Protein-Protein Interaction Extraction from Biomedical Literatures , 2014, PloS one.
[21] Hongfei Lin,et al. A protein-protein interaction extraction approach based on deep neural network , 2016, Int. J. Data Min. Bioinform..
[22] Peter M. A. Sloot,et al. A hybrid approach to extract protein-protein interactions , 2011, Bioinform..
[23] Yung-Chun Chang,et al. PIPE: a protein–protein interaction passage extraction module for BioCreative challenge , 2016, Database J. Biol. Databases Curation.
[24] Deyu Zhou,et al. Biomedical Relation Extraction: From Binary to Complex , 2014, Comput. Math. Methods Medicine.
[25] Yifan Peng,et al. Deep learning for extracting protein-protein interactions from biomedical literature , 2017, BioNLP.
[26] Ren Long,et al. iRSpot-EL: identify recombination spots with an ensemble learning approach , 2017, Bioinform..
[27] Fabio Massimo Zanzotto,et al. Towards Syntax-aware Compositional Distributional Semantic Models , 2014, COLING.
[28] Jung-Hsien Chiang,et al. Discovering novel protein-protein interactions by measuring the protein semantic similarity from the biomedical literature , 2014, J. Bioinform. Comput. Biol..
[29] Michael Collins,et al. Head-Driven Statistical Models for Natural Language Parsing , 2003, CL.
[30] Jun'ichi Tsujii,et al. Protein-protein interaction extraction by leveraging multiple kernels and parsers , 2009, Int. J. Medical Informatics.
[31] Ralf Zimmer,et al. RelEx - Relation extraction using dependency parse trees , 2007, Bioinform..
[32] Jun'ichi Tsujii,et al. Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System , 2010, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[33] Roberto Basili,et al. Semantic convolution kernels over dependency trees: smoothed partial tree kernel , 2011, CIKM '11.
[34] Claudio Giuliano,et al. Exploiting Shallow Linguistic Information for Relation Extraction from Biomedical Literature , 2006, EACL.
[35] Kuo-Chen Chou,et al. 2L-piRNA: A Two-Layer Ensemble Classifier for Identifying Piwi-Interacting RNAs and Their Function , 2017, Molecular therapy. Nucleic acids.
[36] Mei Liu,et al. Prediction of protein-protein interactions using random decision forest framework , 2005, Bioinform..
[37] Jian Su,et al. Protein-Protein Interaction Extraction: A Supervised Learning Approach} , 2005 .
[38] Jari Björne,et al. BioInfer: a corpus for information extraction in the biomedical domain , 2007, BMC Bioinformatics.
[39] Rohit J. Kate,et al. Comparative experiments on learning information extractors for proteins and their interactions , 2005, Artif. Intell. Medicine.
[40] Yvan Saeys,et al. Extracting protein-protein interactions from text using rich feature vectors and feature selection , 2008, SMBM 2008.
[41] Razvan C. Bunescu,et al. Integrating Co-occurrence Statistics with Information Extraction for Robust Retrieval of Protein Interactions from Medline , 2006, BioNLP@NAACL-HLT.
[42] Daniel Berleant,et al. Mining MEDLINE: Abstracts, Sentences, or Phrases? , 2001, Pacific Symposium on Biocomputing.
[43] Takenao Ohkawa,et al. Protein-protein interaction extraction with feature selection by evaluating contribution levels of groups consisting of related features , 2016, BMC Bioinformatics.
[44] Georgiana Dinu,et al. DISSECT - DIStributional SEmantics Composition Toolkit , 2013, ACL.
[45] Michael Collins,et al. Parsing with a Single Neuron: Convolution Kernels for Natural Language Problems , 2001 .
[46] Johan A. K. Suykens,et al. EnsembleSVM: a library for ensemble learning using support vector machines , 2014, J. Mach. Learn. Res..
[47] Yuwei Wang,et al. Protein-protein interaction identification using a hybrid model , 2015, Artif. Intell. Medicine.
[48] Sung-Hyon Myaeng,et al. Simplicity is Better: Revisiting Single Kernel PPI Extraction , 2010, COLING.