Application of content-based image analysis to environmental microorganism classification

Abstract Environmental microorganisms (EMs) are single-celled or multi-cellular microscopic organisms living in the environments. They are crucial to nutrient recycling in ecosystems as they act as decomposers. Occurrence of certain EMs and their species are very informative indicators to evaluate environmental quality. However, the manual recognition of EMs in microbiological laboratories is very time-consuming and expensive. Therefore, in this article an automatic EM classification system based on content-based image analysis (CBIA) techniques is proposed. Our approach starts with image segmentation that determines the region of interest (EM shape). Then, the EM is described by four different shape descriptors, whereas the Internal Structure Histogram (ISH), a new and original shape feature extraction technique introduced in this paper, has turned out to possess the most discriminative properties in this application domain. Afterwards, for each descriptor a support vector machine (SVM) is constructed to distinguish different classes of EMs. At last, results of SVMs trained for all four feature spaces are fused in order to obtain the final classification result. Experimental results certify the effectiveness and practicability of our automatic EM classification system.