Randomly incorporated genomic N6‐methyldeoxyadenosine delays zygotic transcription initiation in a cnidarian
暂无分享,去创建一个
Sofia N. Barreira | A. Baxevanis | C. Schnitzler | U. Frank | Miguel Salinas-Saavedra | S. Gornik | . Febrimarsa
[1] Guibin Jiang,et al. Aberrant DNA N6‐methyladenine incorporation via adenylate kinase 1 is suppressed by ADAL deaminase‐dependent 2′‐deoxynucleotide pool sanitation , 2023, The EMBO journal.
[2] Q. Luo,et al. Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4 , 2022, Nature Communications.
[3] Hong Wang,et al. N6-methyladenosine regulates maternal RNA maintenance in oocytes and timely RNA decay during mouse maternal-to-zygotic transition , 2022, Nature Cell Biology.
[4] Dahua Chen,et al. Dynamic FMR1 granule phase switch instructed by m6A modification contributes to maternal RNA decay , 2022, Nature communications.
[5] R. Sebra,et al. Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution , 2022, Science.
[6] M. Duncan,et al. A simple method for quantitating confocal fluorescent images , 2021, Biochemistry and biophysics reports.
[7] M. Bochtler,et al. DNA adenine methylation in eukaryotes: Enzymatic mark or a form of DNA damage? , 2020, BioEssays : news and reviews in molecular, cellular and developmental biology.
[8] N. Perrimon,et al. CG14906 (mettl4) mediates m6A methylation of U2 snRNA in Drosophila , 2020, Cell Discovery.
[9] Cong Lyu,et al. N6-methyladenine is incorporated into mammalian genome by DNA polymerase , 2020, Cell Research.
[10] C. Schnitzler,et al. Gene knockdown via electroporation of short hairpin RNAs in embryos of the marine hydroid Hydractinia symbiolongicarpus , 2020, Scientific Reports.
[11] C. Schnitzler,et al. The colonial cnidarian Hydractinia , 2020, EvoDevo.
[12] C. Niehrs,et al. The origin of genomic N6-methyl-deoxyadenosine in mammalian cells , 2020, Nature Chemical Biology.
[13] C. Nestor,et al. No evidence for DNA N6-methyladenine in mammals , 2020, Science Advances.
[14] Sofia N. Barreira,et al. Transcription factor AP2 controls cnidarian germ cell induction , 2020, Science.
[15] Zhongzhou Chen,et al. Structural basis of nucleic acid recognition and 6mA demethylation by human ALKBH1 , 2020, Cell Research.
[16] Hao Wu,et al. METTL4 is an snRNA m6Am methyltransferase that regulates RNA splicing , 2020, Cell Research.
[17] Daniel J. Gaffney,et al. N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells , 2019, Nature Genetics.
[18] Shan Gao,et al. A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N6-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription , 2019, Nucleic acids research.
[19] Xiaodong Cheng,et al. Human HemK2/KMT9/N6AMT1 is an active protein methyltransferase, but does not act on DNA in vitro, in the presence of Trm112 , 2019, Cell Discovery.
[20] R. Sebra,et al. Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization , 2019, Cell.
[21] Tao Liu,et al. Sources of artifact in measurements of 6mA and 4mC abundance in eukaryotic genomic DNA , 2019, BMC Genomics.
[22] Shawn C. Little,et al. Spatiotemporal Patterning of Zygotic Genome Activation in a Model Vertebrate Embryo. , 2019, Developmental cell.
[23] Chuan He,et al. 6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda , 2019, Nature Communications.
[24] Marten Postma,et al. PlotsOfData—A web app for visualizing data together with their summaries , 2019, PLoS biology.
[25] T. Carell,et al. Isotope-dilution mass spectrometry for exact quantification of noncanonical DNA nucleosides , 2018, Nature Protocols.
[26] Qiulian Wu,et al. N 6 -methyladenine DNA Modification in Glioblastoma , 2018, Cell.
[27] Yufeng Wu,et al. Phytophthora methylomes are modulated by 6mA methyltransferases and associated with adaptive genome regions , 2018, Genome Biology.
[28] Tianlei Xu,et al. Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons. , 2018, Molecular cell.
[29] Minghui He,et al. N6-Methyladenine DNA Modification in the Human Genome. , 2018, Molecular cell.
[30] Gintaras Deikus,et al. Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing , 2018, Genome research.
[31] M. Olayioye,et al. m6A RNA Degradation Products Are Catabolized by an Evolutionarily Conserved N6-Methyl-AMP Deaminase in Plant and Mammalian Cells , 2018, Plant Cell.
[32] Burkhard Rost,et al. NLSdb—major update for database of nuclear localization signals and nuclear export signals , 2017, Nucleic Acids Res..
[33] Wei Wang,et al. Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing. , 2017, Journal of the American Chemical Society.
[34] Anton J. Enright,et al. The RNA m6A Reader YTHDF2 Is Essential for the Post-transcriptional Regulation of the Maternal Transcriptome and Oocyte Competence , 2017, Molecular cell.
[35] Alexandra-Viola Bohne,et al. Quantitative LC-MS Provides No Evidence for m6 dA or m4 dC in the Genome of Mouse Embryonic Stem Cells and Tissues. , 2017, Angewandte Chemie.
[36] Mario D. Escobar,et al. A cost-effective RNA extraction technique from animal cells and tissue using silica columns , 2017, Journal of biological methods.
[37] Robert J. Schmitz,et al. Widespread adenine N6-methylation of active genes in fungi , 2017, Nature Genetics.
[38] Chuan He,et al. m6A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition , 2016, Nature.
[39] Arne Klungland,et al. ALKBH1-Mediated tRNA Demethylation Regulates Translation , 2016, Cell.
[40] Chuan He,et al. Abundant DNA 6mA methylation during early embryogenesis of zebrafish and pig , 2016, Nature Communications.
[41] James A. Swenberg,et al. DNA methylation on N6-adenine in mammalian embryonic stem cells , 2016, Nature.
[42] Charles R. Bradshaw,et al. Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications , 2015, Nature Structural &Molecular Biology.
[43] L. Doré,et al. N 6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas , 2015, Cell.
[44] Shunmin He,et al. N6-Methyladenine DNA Modification in Drosophila , 2015, Cell.
[45] L. Aravind,et al. DNA Methylation on N6-Adenine in C. elegans , 2015, Cell.
[46] U. Frank,et al. The embryonic development of the cnidarian Hydractinia echinata , 2014, Evolution & development.
[47] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[48] Juan Fernández,et al. Fixation/Permeabilization: New Alternative Procedure for Immunofluorescence and mRNA In Situ Hybridization of Vertebrate and Invertebrate Embryos , 2013, Developmental dynamics : an official publication of the American Association of Anatomists.
[49] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[50] E. Ercole,et al. Evaluation of two commercial and three home-made fixatives for the substitution of formalin: a formaldehyde–free laboratory is possible , 2012, Environmental Health.
[51] Kevin W Eliceiri,et al. NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.
[52] Maxim Teslenko,et al. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space , 2012, Systematic biology.
[53] M. Finn,et al. Copper‐Catalyzed Azide–Alkyne Click Chemistry for Bioconjugation , 2011, Current protocols in chemical biology.
[54] Philip Machanick,et al. MEME-ChIP: motif analysis of large DNA datasets , 2011, Bioinform..
[55] M. Tomita,et al. Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs , 2009, Proceedings of the National Academy of Sciences.
[56] Paul Horton,et al. Nucleic Acids Research Advance Access published May 21, 2007 WoLF PSORT: protein localization predictor , 2007 .
[57] J. Ravanat,et al. Undetectable levels of N6‐methyl adenine in mouse DNA: Cloning and analysis of PRED28, a gene coding for a putative mammalian DNA adenine methyltransferase , 2006, FEBS letters.
[58] R. Roberts,et al. Structural characterization and comparative phylogenetic analysis of Escherichia coli HemK, a protein (N5)-glutamine methyltransferase. , 2004, Journal of molecular biology.
[59] M. W. van der Woude,et al. Phase variation of Ag43 in Escherichia coli: Dam‐dependent methylation abrogates OxyR binding and OxyR‐mediated repression of transcription , 2000, Molecular microbiology.
[60] K. Skarstad,et al. E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration , 1995, Cell.
[61] S. Varnum,et al. Deadenylation of maternal mRNAs during Xenopus oocyte maturation does not require specific cis-sequences: a default mechanism for translational control. , 1990, Genes & development.
[62] P. Modrich,et al. Requirement for d(GATC) sequences in Escherichia coli mutHLS mismatch correction. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[63] P. Modrich,et al. Recognition sequence of the dam methylase of Escherichia coli K12 and mode of cleavage of Dpn I endonuclease. , 1979, The Journal of biological chemistry.
[64] R. Steele,et al. Modified bases in the DNAs of unicellular eukaryotes: an examination of distributions and possible roles, with emphasis on hydroxymethyluracil in dinoflagellates. , 1978, Bio Systems.