Bioenergy Trees: Genetic and Genomic Strategies to Improve Yield
暂无分享,去创建一个
Gail Taylor | Magnus Hertzberg | Andrea Polle | Simone Scalabrin | Michele Morgante | Michael R. Allwright | Hazel K. Smith | Henning Wildhagen | Rishi Bhalerao | Joost J. B. Keurentjes | Davide Scaglione | M. Morgante | J. Keurentjes | G. Taylor | R. Bhalerao | S. Scalabrin | M. Hertzberg | A. Polle | D. Scaglione | H. Wildhagen | Hazel K. Smith | M. Allwright | Mike Allwright
[1] R. Vaillancourt,et al. Stability of quantitative trait loci for growth and wood properties across multiple pedigrees and environments in Eucalyptus globulus. , 2013, The New phytologist.
[2] A. Kilian,et al. Population genetic analysis and phylogeny reconstruction in Eucalyptus (Myrtaceae) using high-throughput, genome-wide genotyping. , 2011, Molecular phylogenetics and evolution.
[3] Heidi Ledford. Brazil considers transgenic trees , 2014, Nature.
[4] T. Volk,et al. Willow biomass production during ten successive annual harvests , 2001 .
[5] N. Ramankutty,et al. Recent patterns of crop yield growth and stagnation , 2012, Nature Communications.
[6] T. Yin,et al. Transcriptome Analysis of the Differentially Expressed Genes in the Male and Female Shrub Willows (Salix suchowensis) , 2013, PloS one.
[7] L. B. Snoek,et al. Regulatory Network Identification by Genetical Genomics: Signaling Downstream of the Arabidopsis Receptor-Like Kinase ERECTA1[W][OA] , 2010, Plant Physiology.
[8] Li-an Xu,et al. Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa. , 2011, Genes & genetic systems.
[9] S. Strauss,et al. Stability of Herbicide Resistance and GUS Expression in Transgenic Hybrid Poplars (Populus sp.) During Four Years of Field Trials and Vegetative Propagation , 2002 .
[10] Yang Li,et al. University of Groningen Identifying Genotype-by-Environment Interactions in the Metabolism of Germinating Arabidopsis Seeds Using Generalized Genetical Genomics , 2012 .
[11] A. Polle,et al. On the salty side of life: molecular, physiological and anatomical adaptation and acclimation of trees to extreme habitats. , 2015, Plant, cell & environment.
[12] C. Wilkerson,et al. Monolignol Ferulate Transferase Introduces Chemically Labile Linkages into the Lignin Backbone , 2014, Science.
[13] Xiang Yu,et al. Environmental biosafety assessment on transgenic Eucalyptus globulus harboring the choline oxidase (codA) gene in semi-confined condition , 2013 .
[14] Reinhart Ceulemans,et al. Biomass yield of poplar after five 2-year coppice rotations , 1999 .
[15] M. Navarro,et al. Two EguCBF1 genes overexpressed in Eucalyptus display a different impact on stress tolerance and plant development. , 2011, Plant biotechnology journal.
[16] Chris Somerville,et al. Feedstocks for Lignocellulosic Biofuels , 2010, Science.
[17] Corinne Le Quéré,et al. Betting on negative emissions , 2014 .
[18] H. Griffiths,et al. The potential for land sparing to offset greenhouse gas emissions from agriculture , 2016 .
[19] M. Stolarski,et al. Yield, energy parameters and chemical composition of short-rotation willow biomass , 2013 .
[20] Arthur J. Ragauskas,et al. Switchgrass as an energy crop for biofuel production: A review of its ligno-cellulosic chemical properties , 2010 .
[21] Antoine Harfouche,et al. Accelerating the domestication of forest trees in a changing world. , 2012, Trends in plant science.
[22] Correlations of expression of cell wall biosynthesis genes with variation in biomass composition in shrub willow (Salix spp.) biomass crops , 2012, Tree Genetics & Genomes.
[23] C. Barbas,et al. ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. , 2013, Trends in biotechnology.
[24] Ralph E.H. Sims,et al. Eucalyptus species for biomass energy in New Zealand—Part II: Coppice performance , 1999 .
[25] C. Cruz,et al. Mapping of QTLs related with wood quality and developmental characteristics in hybrids (Eucalyptus grandis x Eucalyptus urophylla) , 2007 .
[26] Malia A. Gehan,et al. Transcriptional networks-crops, clocks, and abiotic stress. , 2015, Current opinion in plant biology.
[27] G. Taylor,et al. Molecular Breeding for Improved Second Generation Bioenergy Crops. , 2016, Trends in plant science.
[28] A. Hastings,et al. Land‐use change to bioenergy production in Europe: implications for the greenhouse gas balance and soil carbon , 2012 .
[29] Lei Li,et al. Mapping QTLs for oil traits and eQTLs for oleosin genes in jatropha , 2011, BMC Plant Biology.
[30] M. Kirst,et al. Genetical genomics of Populus leaf shape variation , 2015, BMC Plant Biology.
[31] Ian Shield,et al. Genetic improvement of willow for bioenergy and biofuels. , 2011, Journal of integrative plant biology.
[32] D. Gagnon,et al. Biomass and volume yield after 6 years in multiclonal hybrid poplar riparian buffer strips , 2010 .
[33] Elaine R. Mardis,et al. A decade’s perspective on DNA sequencing technology , 2011, Nature.
[34] T. Gallagher,et al. Analysis on the Growth Rhythm and Cold Tolerance of Five-Year Old Eucalyptus benthamii Plantation for Bioenergy , 2015 .
[35] D. Grattapaglia,et al. Genome-wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history of Eucalyptus grandis. , 2015, The New phytologist.
[36] F. Bravo,et al. Importance of root system in total biomass for Eucalyptus globulus in northern Spain , 2014 .
[37] A. Kilian,et al. A reference linkage map for Eucalyptus , 2012, BMC Genomics.
[38] H. Mei,et al. Identification of Rice Transcription Factors Associated with Drought Tolerance Using the Ecotilling Method , 2012, PloS one.
[39] Ralph E.H. Sims,et al. Biomass production and nutrient cycling in Eucalyptus short rotation energy forests in New Zealand: II. Litter fall and nutrient return , 2006 .
[40] Erin T. Hamanishi,et al. Poplar trees reconfigure the transcriptome and metabolome in response to drought in a genotype- and time-of-day-dependent manner , 2015, BMC Genomics.
[41] Rongling Wu,et al. Molecular linkage maps of the Populus genome. , 2002, Genome.
[42] D. Grattapaglia,et al. Genomic selection in forest tree breeding , 2011, Tree Genetics & Genomes.
[43] Jacek Majewski,et al. The study of eQTL variations by RNA-seq: from SNPs to phenotypes. , 2011, Trends in genetics : TIG.
[44] Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga , 2015, Molecular Breeding.
[45] Chung-Jui Tsai,et al. Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennial Populus reveals 4-coumarate:CoA ligase specificity and redundancy. , 2015, The New phytologist.
[46] R. Chaturvedi,et al. Effect of long-term irrigation with wastewater on growth, biomass production and water use by Eucalyptus (Eucalyptus tereticornis Sm.) planted at variable stocking density , 2015 .
[47] Wendy S. Schackwitz,et al. Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. , 2012, The New phytologist.
[48] Michael G. Ryan,et al. Production and carbon allocation in a clonal Eucalyptus plantation with water and nutrient manipulations , 2008 .
[49] J. Pereira,et al. Metabolic responses to water deficit in two Eucalyptus globulus clones with contrasting drought sensitivity. , 2006, Tree physiology.
[50] P. Tittonell,et al. The yield gap of major food crops in family agriculture in the tropics: Assessment and analysis through field surveys and modelling , 2013 .
[51] J. Wolf,et al. Climate-induced yield variability and yield gaps of maize (Zea mays L.) in the Central Rift Valley of Ethiopia , 2014 .
[52] M. Liesebach,et al. Approaches on vegetative propagation of difficult-to-root Salix caprea , 2004, Plant Cell, Tissue and Organ Culture.
[53] R. Ceulemans,et al. First vs. second rotation of a poplar short rotation coppice: above-ground biomass productivity and shoot dynamics. , 2015 .
[54] Angela Karp,et al. Genetic strategies for dissecting complex traits in biomass willows (Salix spp.). , 2014, Tree physiology.
[55] M. Jansen,et al. Fast Growing Plantations for Wood Production – Integration of Ecological Effects and Economic Perspectives , 2015, Front. Bioeng. Biotechnol..
[56] M. Hinchee,et al. Short-rotation woody crops for bioenergy and biofuels applications , 2009, In Vitro Cellular & Developmental Biology - Plant.
[57] J. Cañizares,et al. Genomic variation in tomato, from wild ancestors to contemporary breeding accessions , 2015, BMC Genomics.
[58] Rogier P.O. Schulte,et al. Functional land management: A framework for managing soil-based ecosystem services for the sustainable intensification of agriculture , 2014 .
[59] D. Grattapaglia,et al. A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species. , 2015, The New phytologist.
[60] Michelle J. Serapiglia,et al. Yield and Woody Biomass Traits of Novel Shrub Willow Hybrids at Two Contrasting Sites , 2012, BioEnergy Research.
[61] Pär K Ingvarsson,et al. Association genetics of complex traits in plants. , 2011, The New phytologist.
[62] Peter J. Gregory,et al. Soil management in relation to sustainable agriculture and ecosystem services , 2011 .
[63] A. Polle,et al. Poplar genetic engineering: promoting desirable wood characteristics and pest resistance , 2013, Applied Microbiology and Biotechnology.
[64] S. Berlin,et al. Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae) , 2014, Tree Genetics & Genomes.
[65] Chin-Teng Lin,et al. Discovering monotonic stemness marker genes from time-series stem cell microarray data , 2015, BMC Genomics.
[66] Gail Taylor,et al. Land use change to bioenergy: A meta-analysis of soil carbon and GHG emissions , 2015 .
[67] J. Wolf,et al. Yield gap analysis with local to global relevance—A review , 2013 .
[68] A. Polle,et al. Water consumption and biomass production of protoplast fusion lines of poplar hybrids under drought stress , 2015, Front. Plant Sci..
[69] Pete Smith,et al. Energy crops: current status and future prospects , 2006 .
[70] D. Neale,et al. Forest tree genomics: growing resources and applications , 2011, Nature Reviews Genetics.
[71] T. Gaertig,et al. Influence of soil aeration on rooting and growth of the Beuys-trees in Kassel, Germany , 2012 .
[72] G. Taylor,et al. Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci , 2009, BMC Plant Biology.
[73] D. Grattapaglia,et al. Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments. , 2012, The New phytologist.
[74] G. Taylor,et al. QTL for yield in bioenergy Populus: identifying G×E interactions from growth at three contrasting sites , 2007, Tree Genetics & Genomes.
[75] Mariusz J. Stolarski,et al. Willow biomass production under conditions of low-input agriculture on marginal soils , 2011 .
[76] J. Klápště,et al. Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing , 2015, BMC Genomics.
[77] Jean Bousquet,et al. Genomic selection accuracies within and between environments and small breeding groups in white spruce , 2014, BMC Genomics.
[78] Mark F. Davis,et al. Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem. , 2010, The New phytologist.
[79] P. Nilsson,et al. The genetics and genomics of the drought response in Populus. , 2006, The Plant journal : for cell and molecular biology.
[80] S. Ogle,et al. Management swing potential for bioenergy crops , 2013 .
[81] P. Jaiswal,et al. The floral transcriptome of Eucalyptus grandis. , 2015, The New phytologist.
[82] J. Keurentjes,et al. Advances in Genetical Genomics of Plants , 2009, Current genomics.
[83] E. Bonari,et al. Biomass production and energy balance of a 12‐year‐old short‐rotation coppice poplar stand under different cutting cycles , 2010 .
[84] Traian I. Teodorescu,et al. High biomass yield achieved by Salix clones in SRIC following two 3-year coppice rotations on abandoned farmland in southern Quebec, Canada , 2003 .
[85] M. Van Montagu,et al. Improved saccharification and ethanol yield from field-grown transgenic poplar deficient in cinnamoyl-CoA reductase , 2013, Proceedings of the National Academy of Sciences.
[86] L. Gomez,et al. Sustainable liquid biofuels from biomass: the writing's on the walls. , 2008, The New phytologist.
[87] J. Tibbits,et al. Association mapping for wood quality and growth traits in Eucalyptus globulus ssp. globulus Labill identifies nine stable marker-trait associations for seven traits , 2014, Tree Genetics & Genomes.
[88] M. Weih,et al. Short-rotation forestry with hybrid aspen (Populus tremula L.×P. tremuloides Michx.) in Northern Europe , 2012 .
[89] Traian I. Teodorescu,et al. Field performance and biomass production of 12 willow and poplar clones in short-rotation coppice in southern Quebec (Canada) , 2005 .
[90] D. Grattapaglia,et al. A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus , 2006, BMC Plant Biology.
[91] Chaofeng Li,et al. Efficient CRISPR/Cas9-mediated Targeted Mutagenesis in Populus in the First Generation , 2015, Scientific Reports.
[92] D. Grattapaglia,et al. Genetic mapping of Eef1, a major effect QTL for early flowering in Eucalyptus grandis , 2005, Tree Genetics & Genomes.
[93] J. Ehlting,et al. Network analysis reveals the relationship among wood properties, gene expression levels and genotypes of natural Populus trichocarpa accessions. , 2013, The New phytologist.
[94] Uffe Jørgensen,et al. Benefits versus risks of growing biofuel crops: the case of Miscanthus , 2011 .
[95] Camilo Cornejo,et al. Genetically engineered crops: from idea to product. , 2014, Annual review of plant biology.
[96] O. Leyser,et al. Functional screening of willow alleles in Arabidopsis combined with QTL mapping in willow (Salix) identifies SxMAX4 as a coppicing response gene , 2014, Plant biotechnology journal.
[97] Mark F. Davis,et al. Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels. , 2009, The New phytologist.
[98] Wendy S. Schackwitz,et al. A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species , 2013, Molecular ecology resources.
[99] Y. van de Peer,et al. The Eucalyptus grandis Genome Project: Genome and transcriptome resources for comparative analysis of woody plant biology , 2011, BMC Proceedings.
[100] D. Tilman,et al. Global food demand and the sustainable intensification of agriculture , 2011, Proceedings of the National Academy of Sciences.
[101] N. Ramankutty,et al. Closing yield gaps through nutrient and water management , 2012, Nature.
[102] R. Ceulemans,et al. Production physiology and morphology of Populus species and their hybrids grown under short rotation. II. Biomass components and harvest index of hybrid and parental species clones , 1997 .
[103] Ulrich Schurr,et al. Phenotyping in the fields: dissecting the genetics of quantitative traits and digital farming. , 2015, The New phytologist.
[104] H. Bae,et al. The Transgenic Poplar as an Efficient Bioreactor System for the Production of Xylanase , 2012, Bioscience, biotechnology, and biochemistry.
[105] S. Powers,et al. Genetic mapping of rust resistance loci in biomass willow , 2011, Tree Genetics & Genomes.
[106] Lawrence P. Abrahamson,et al. Effect of organic amendments and slow-release nitrogen fertilizer on willow biomass production and soil chemical characteristics , 2003 .
[107] Gail Taylor,et al. Potential impacts on ecosystem services of land use transitions to second‐generation bioenergy crops in GB , 2015, Global change biology. Bioenergy.
[108] D. Gagnon,et al. Yield in 8 year-old hybrid poplar plantations on abandoned farmland along climatic and soil fertility gradients , 2012 .
[109] M. Morgante,et al. Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling. , 2011, The Plant journal : for cell and molecular biology.
[110] R. Ceulemans,et al. Biomass yield and energy balance of a short-rotation poplar coppice with multiple clones on degraded land during 16 years , 2013 .
[111] R. Hamelin,et al. Association genetics, geography and ecophysiology link stomatal patterning in Populus trichocarpa with carbon gain and disease resistance trade‐offs , 2014, Molecular ecology.
[112] R. Hamelin,et al. Association Analysis Identifies Melampsora ×columbiana Poplar Leaf Rust Resistance SNPs , 2013, PloS one.
[113] M. Van Montagu,et al. Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. , 2001, Genetics.
[114] V. Korzun,et al. Marker-assisted selection for disease resistance in wheat and barley breeding. , 2012, Phytopathology.
[115] Mark F. Davis,et al. Phenotypic variation in growth and biomass distribution for two advanced-generation pedigrees of hybrid poplar , 2005 .
[116] N. Barkley,et al. Application of TILLING and EcoTILLING as Reverse Genetic Approaches to Elucidate the Function of Genes in Plants and Animals , 2008, Current genomics.
[117] U. B. Nielsen,et al. Production potential of 36 poplar clones grown at medium length rotation in Denmark , 2014 .
[118] Steven J. M. Jones,et al. SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing , 2011, Molecular ecology resources.
[119] Vinuselvi Parisutham,et al. Heterologous Expression of Plant Cell Wall Degrading Enzymes for Effective Production of Cellulosic Biofuels , 2012, Journal of biomedicine & biotechnology.
[120] S. Berlin,et al. High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus , 2010, BMC Genomics.
[121] D. Grattapaglia,et al. Genetic mapping provides evidence for the role of additive and non-additive QTLs in the response of inter-specific hybrids of Eucalyptus to Puccinia psidii rust infection , 2011, Euphytica.
[122] T. Volk,et al. Biomass and nutrient removal by willow clones in experimental bioenergy plantations in New York State , 2001 .
[123] T. Altmann,et al. Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions , 2015, Journal of experimental botany.
[124] A. Myburg,et al. Comparative interrogation of the developing xylem transcriptomes of two wood-forming species: Populus trichocarpa and Eucalyptus grandis. , 2015, The New phytologist.
[125] G. Johnson,et al. Yields of willow biomass crops across a range of sites in North America , 2011 .
[126] G. Taylor,et al. Bioenergy, Food Production and Biodiversity – An Unlikely Alliance? , 2015 .
[127] W. M. Dawson,et al. Biomass from short-rotation coppice willow on marginal land , 1986 .
[128] G. Tuskan,et al. Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms. , 2013, The New phytologist.
[129] John Ralph,et al. The Effects on Lignin Structure of Overexpression of Ferulate 5-Hydroxylase in Hybrid Poplar1[W] , 2009, Plant Physiology.
[130] G. Tuskan,et al. Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa. , 2014, The New phytologist.
[131] M. Teare. Candidate gene association studies. , 2011, Methods in molecular biology.
[132] E. Buckler,et al. Structure of linkage disequilibrium in plants. , 2003, Annual review of plant biology.
[133] N. F. D. Barros,et al. Biomass yield and calorific value of six clonal stands of Eucalyptus urophylla S. T. Blake cultivated in Northeastern Brazil , 2013 .
[134] R. Terauchi,et al. QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. , 2013, The Plant journal : for cell and molecular biology.
[135] Bartel Vanholme,et al. A Systems Biology View of Responses to Lignin Biosynthesis Perturbations in Arabidopsis[W] , 2012, Plant Cell.
[136] Nicholas J. B. Brereton,et al. QTL Mapping of Enzymatic Saccharification in Short Rotation Coppice Willow and Its Independence from Biomass Yield , 2010, BioEnergy Research.
[137] R. Vaillancourt,et al. QTL influencing growth and wood properties in Eucalyptus globulus , 2009, Tree Genetics & Genomes.
[138] N. Bird,et al. Is woody bioenergy carbon neutral? A comparative assessment of emissions from consumption of woody bioenergy and fossil fuel , 2012 .
[139] J. Tibbits,et al. Candidate gene-based association mapping of growth and wood quality traits in Eucalyptus globulus Labill , 2011, BMC Proceedings.
[140] S. Nonhebel. Energy yields in intensive and extensive biomass production systems , 2002 .
[141] J. Stenlid,et al. QTL mapping of resistance to leaf rust in Salix , 2011, Tree Genetics & Genomes.
[142] Navin Ramankutty,et al. Mind the gap: how do climate and agricultural management explain the ‘yield gap’ of croplands around the world? , 2010 .
[143] R. Sederoff,et al. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. , 1994, Genetics.
[144] Antoine Harfouche,et al. Tree genetic engineering and applications to sustainable forestry and biomass production. , 2011, Trends in biotechnology.
[145] R. Hüttl,et al. Growth dynamics and biomass accumulation of 8-year-old hybrid poplar clones in a short-rotation plantation on a clayey-sandy mining substrate with respect to plant nutrition and water budget , 2004, European Journal of Forest Research.
[146] René Carmona,et al. Biomass yield and quality of an energy dedicated crop of poplar (Populus spp.) clones in the Mediterranean zone of Chile , 2015 .
[147] M. Gribskov,et al. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) , 2006, Science.
[148] A. Long,et al. The Lowdown on Linkage Disequilibrium , 2003, The Plant Cell Online.
[149] Aaron M. Duffy,et al. Genotyping-by-Sequencing for Populus Population Genomics: An Assessment of Genome Sampling Patterns and Filtering Approaches , 2014, PloS one.
[150] Mark F. Davis,et al. Association genetics of chemical wood properties in black poplar (Populus nigra). , 2013, The New phytologist.
[151] Evelyne Costes,et al. Multispectral airborne imagery in the field reveals genetic determinisms of morphological and transpiration traits of an apple tree hybrid population in response to water deficit , 2015, Journal of experimental botany.
[152] Mark F. Davis,et al. Lignin content in natural Populus variants affects sugar release , 2011, Proceedings of the National Academy of Sciences.
[153] Shanlin Fu,et al. Quantifying the Clinical Significance of Cannabis Withdrawal , 2012, PloS one.