A Quantitative Model for Human Olfactory Receptors

A wide variety of chemicals having distinct odors are smelled by humans. Odor perception initiates in the nose, where it is detected by a large family of olfactory receptors (ORs). Based on divergence of evolutionary model, a sequence of human ORs database has been proposed by D. Lancet et al (2000, 2006). It is quite impossible to infer whether a given sequence of nucleotides is a human OR or not, without any biological experimental validation. In our perspective, a proper quantitative understanding of these ORs is required to justify or nullify whether a given sequence is a human OR or not. In this paper, all human OR sequences have been quantified, and a set of clusters have been made using the quantitative results based on two different metrics. Using this proposed quantitative model, one can easily make probable justification or deterministic nullification whether a given sequence of nucleotides is a probable human OR homologue or not, without seeking any biological experiment. Of course a further biological experiment is essential to validate the probable human OR homologue.

[1]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[2]  J. Graves,et al.  The Olfactory Receptor Gene Family of Marsupials , 2010 .

[3]  Daniel A. Lidar,et al.  Is the Geometry of Nature Fractal? , 1998, Science.

[4]  Gustavo Glusman,et al.  A comparison of the human and chimpanzee olfactory receptor gene repertoires. , 2005, Genome research.

[5]  Gordon M Shepherd,et al.  The olfactory receptor family album , 2001, Genome Biology.

[6]  J. D. Watson The human genome project: past, present, and future. , 1990, Science.

[7]  Sk. Sarif Hassan,et al.  Underlying mathematics in diversification of human olfactory receptors in different loci , 2011, Interdisciplinary Sciences: Computational Life Sciences.

[8]  F. Collins,et al.  Implications of the Human Genome Project for medical science. , 2001, JAMA.

[9]  National Library of Medicine fact sheet. , 1974, Clinical toxicology.

[10]  C. Sparrow The Fractal Geometry of Nature , 1984 .

[11]  Tayfun Babadagli,et al.  Quantification of Natural Fracture Surfaces Using Fractal Geometry , 1998 .

[12]  International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome , 2001, Nature.

[13]  M. Crawford The Human Genome Project. , 1990, Human biology.

[14]  F. Collins,et al.  The Human Genome Project: Lessons from Large-Scale Biology , 2003, Science.

[15]  V. Anh,et al.  Fractals in DNA Sequence Analysis , 2002 .

[16]  A. Conci,et al.  Succolarity: Defining a method to calculate this fractal measure , 2008, 2008 15th International Conference on Systems, Signals and Image Processing.

[17]  L. Buck,et al.  The human olfactory receptor gene family. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[18]  Carlo Cattani,et al.  Fractals and Hidden Symmetries in DNA , 2010 .

[19]  John B. Shoven,et al.  I , Edinburgh Medical and Surgical Journal.

[20]  Deborah H. Charbonneau,et al.  Genetics Home Reference , 2005 .

[21]  C. Crasto Olfactory Receptors , 2013, Methods in Molecular Biology.

[22]  S. Firestein,et al.  The olfactory receptor gene superfamily of the mouse , 2002, Nature Neuroscience.

[23]  T. Friedmann,et al.  Gene Therapy for Human Genetic Disease? , 1972, Science.

[24]  P. Deschavanne,et al.  Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. , 1999, Molecular biology and evolution.

[25]  Gustavo Glusman,et al.  The complete human olfactory subgenome. , 2001, Genome research.