Structural and evolutionary divergence of eukaryotic protein kinases in Apicomplexa
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[1] O. Mercereau‐Puijalon,et al. A new Apicomplexa-specific protein kinase family : multiple members in Plasmodium falciparum, all with an export signature , 2005, BMC Genomics.
[2] Dustin J Maly,et al. Toxoplasma gondii calcium-dependent protein kinase 1 is a target for selective kinase inhibitors , 2010, Nature Structural &Molecular Biology.
[3] D. Roos,et al. Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses. , 2010, Cell host & microbe.
[4] Aparna Dixit,et al. PfSRPK1, a Novel Splicing-related Kinase from Plasmodium falciparum* , 2010, The Journal of Biological Chemistry.
[5] Adam R Renslo,et al. Drug discovery and development for neglected parasitic diseases , 2006, Nature chemical biology.
[6] S. Adl,et al. The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists , 2005, The Journal of eukaryotic microbiology.
[7] Leszek Rychlewski,et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes , 2008, Nature.
[8] K. Wilson,et al. The structure of phosphorylated p38gamma is monomeric and reveals a conserved activation-loop conformation. , 1999, Structure.
[9] Jonathan E. Allen,et al. Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.
[10] L. Meijer,et al. Pfnek-1, a NIMA-related kinase from the human malaria parasite Plasmodium falciparum Biochemical properties and possible involvement in MAPK regulation. , 2001, European journal of biochemistry.
[11] E. Nishida,et al. The MAP kinase cascade is essential for diverse signal transduction pathways. , 1993, Trends in biochemical sciences.
[12] G. Labesse,et al. ROP18 Is a Rhoptry Kinase Controlling the Intracellular Proliferation of Toxoplasma gondii , 2007, PLoS pathogens.
[13] D. Roos. Genetics. Themes and variations in apicomplexan parasite biology. , 2005, Science.
[14] I. Ebersberger,et al. Phylogenomic analyses of malaria parasites and evolution of their exported proteins , 2011, BMC Evolutionary Biology.
[15] G. Barton,et al. The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe , 2007, BMC Genomics.
[16] L. Sibley,et al. Calcium-dependent signaling and kinases in apicomplexan parasites. , 2009, Cell host & microbe.
[17] M. Nunes,et al. A novel protein kinase family in Plasmodium falciparum is differentially transcribed and secreted to various cellular compartments of the host cell , 2007, Molecular microbiology.
[18] M. Gardner,et al. The Alveolate Perkinsus marinus: Biological Insights from EST Gene Discovery , 2010, BMC Genomics.
[19] Ping Xu,et al. Complete Genome Sequence of the Apicomplexan, Cryptosporidium parvum , 2004, Science.
[20] Andrew F Neuwald,et al. Evolutionary constraints associated with functional specificity of the CMGC protein kinases MAPK, CDK, GSK, SRPK, DYRK, and CK2α , 2004, Protein science : a publication of the Protein Society.
[21] Jessica C Kissinger,et al. Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria , 2008, BMC Evolutionary Biology.
[22] Nicholas H. Putnam,et al. The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism , 2004, Science.
[23] Geoffrey J. Barton,et al. Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases , 2008, Nucleic Acids Res..
[24] S. Knapp,et al. Kinase Domain Insertions Define Distinct Roles of CLK Kinases in SR Protein Phosphorylation , 2009, Structure.
[25] L. Sibley,et al. Structures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium , 2010, Nature Structural &Molecular Biology.
[26] Eileen Kraemer,et al. EuPathDB: a portal to eukaryotic pathogen databases , 2009, Nucleic Acids Res..
[27] Philippa Rhodes,et al. CryptoDB: a Cryptosporidium bioinformatics resource update , 2005, Nucleic Acids Res..
[28] D. Chakrabarti,et al. PfPK7, an atypical MEK‐related protein kinase, reflects the absence of classical three‐component MAPK pathways in the human malaria parasite Plasmodium falciparum , 2004, Molecular microbiology.
[29] Xiang-Dong Fu,et al. Mass Spectrometric and Kinetic Analysis of ASF/SF2 Phosphorylation by SRPK1 and Clk/Sty* , 2005, Journal of Biological Chemistry.
[30] Eileen Kraemer,et al. EuPathDB: a portal to eukaryotic pathogen databases. Nucleic acids research , 2009 .
[31] R. Farkas,et al. The Doa locus encodes a member of a new protein kinase family and is essential for eye and embryonic development in Drosophila melanogaster. , 1994, Genes & development.
[32] Andrew F Neuwald,et al. The CHAIN program: forging evolutionary links to underlying mechanisms. , 2007, Trends in biochemical sciences.
[33] Alexandros Stamatakis,et al. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..
[34] Haiming Wang,et al. ToxoDB: an integrated Toxoplasma gondii database resource , 2007, Nucleic Acids Res..
[35] William H. Majoros,et al. Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote , 2006, PLoS biology.
[36] A. Reddy,et al. An SC35-like Protein and a Novel Serine/Arginine-rich Protein Interact with Arabidopsis U1-70K Protein* , 1999, The Journal of Biological Chemistry.
[37] Gregory A. Buck,et al. The genome of Cryptosporidium hominis , 2004, Nature.
[38] A. Wernimont,et al. Structures of parasitic CDPK domains point to a common mechanism of activation , 2011, Proteins.
[39] T. Tsuboi,et al. A small-scale systematic analysis of alternative splicing in Plasmodium falciparum. , 2009, Parasitology international.
[40] R. Fluhr. Regulation of splicing by protein phosphorylation. , 2008, Current topics in microbiology and immunology.
[41] J. Kissinger,et al. The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees , 2008, Molecular biology and evolution.
[42] T. Hunter,et al. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification 1 , 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[43] M. Noble,et al. Structures of P. falciparum protein kinase 7 identify an activation motif and leads for inhibitor design. , 2008, Structure.
[44] J. Boothroyd,et al. Kiss and spit: the dual roles of Toxoplasma rhoptries , 2008, Nature Reviews Microbiology.
[45] J. Ajioka,et al. Population structure of Toxoplasma gondii: clonal expansion driven by infrequent recombination and selective sweeps. , 2008, Annual review of microbiology.
[46] Michael D. Kaufman,et al. Switch control pocket inhibitors of p38-MAP kinase. Durable type II inhibitors that do not require binding into the canonical ATP hinge region. , 2010, Bioorganic & medicinal chemistry letters.
[47] Jonathan E. Allen,et al. Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes , 2005, Science.
[48] M. Shaw. Cell invasion by Theileria sporozoites. , 2003, Trends in parasitology.
[49] Karsten M. Borgwardt,et al. The genome of the simian and human malaria parasite Plasmodium knowlesi , 2008, Nature.
[50] David S. Roos,et al. Themes and Variations in Apicomplexan Parasite Biology , 2005, Science.
[51] L. Aravind,et al. Comparative analysis of apicomplexa and genomic diversity in eukaryotes. , 2004, Genome research.
[52] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[53] Andrew F. Neuwald,et al. Rapid detection, classification and accurate alignment of up to a million or more related protein sequences , 2009, Bioinform..
[54] I. Sherman. Molecular approaches to malaria , 2005 .
[55] Xiang-Dong Fu,et al. Interplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2. , 2005, Molecular cell.
[56] D. Baker,et al. Primary structure and sexual stage-specific expression of a LAMMER protein kinase of Plasmodium falciparum. , 2001, International journal for parasitology.
[57] Neil Hall,et al. Genome of the Host-Cell Transforming Parasite Theileria annulata Compared with T. parva , 2005, Science.
[58] G. V. van Dooren,et al. Building the Perfect Parasite: Cell Division in Apicomplexa , 2007, PLoS pathogens.
[59] R. Fayer,et al. Host adaptation and host-parasite co-evolution in Cryptosporidium: implications for taxonomy and public health. , 2002, International journal for parasitology.
[60] J. Lawrence,et al. Common themes in the genome strategies of pathogens. , 2005, Current opinion in genetics & development.
[61] L. Sibley,et al. Novel structural and regulatory features of rhoptry secretory kinases in Toxoplasma gondii , 2009, The EMBO journal.
[62] Bartek Wilczynski,et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics , 2009, Bioinform..
[63] Terence P Speed,et al. Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites , 2006, Genome Biology.
[64] A. Harmon,et al. Plants, symbiosis and parasites: a calcium signalling connection , 2005, Nature Reviews Molecular Cell Biology.
[65] E. Nikolakaki,et al. Phosphorylation by LAMMER protein kinases: determination of a consensus site, identification of in vitro substrates, and implications for substrate preferences. , 2002, Biochemistry.
[66] L. Johnson,et al. The structural basis for specificity of substrate and recruitment peptides for cyclin-dependent kinases , 1999, Nature Cell Biology.
[67] T. Pawson,et al. SRPK1 and Clk/Sty Protein Kinases Show Distinct Substrate Specificities for Serine/Arginine-rich Splicing Factors* , 1996, The Journal of Biological Chemistry.
[68] Jonathan Crabtree,et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax , 2008, Nature.
[69] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[70] P. Puigserver,et al. Cdc2-like kinase 2 is an insulin-regulated suppressor of hepatic gluconeogenesis. , 2010, Cell metabolism.
[71] Jennifer D. Artz,et al. The Cryptosporidium parvum Kinome , 2011, BMC Genomics.
[72] Chao Zhang,et al. Calcium-dependent protein kinase 1 is an essential regulator of exocytosis in Toxoplasma , 2010, Nature.
[73] Mami Okada,et al. Plasmodium falciparum FIKK Kinase Members Target Distinct Components of the Erythrocyte Membrane , 2010, PloS one.
[74] L. Sibley,et al. Comparative genomic and phylogenetic analyses of calcium ATPases and calcium-regulated proteins in the apicomplexa. , 2006, Molecular biology and evolution.
[75] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[76] John R Yates,et al. A Comprehensive Survey of the Plasmodium Life Cycle by Genomic, Transcriptomic, and Proteomic Analyses , 2005, Science.
[77] Pauline Ward,et al. Protein kinases of the human malaria parasite Plasmodium falciparum: the kinome of a divergent eukaryote , 2004, BMC Genomics.
[78] Peter J Bradley,et al. Proteomic Analysis of Rhoptry Organelles Reveals Many Novel Constituents for Host-Parasite Interactions in Toxoplasma gondii* , 2005, Journal of Biological Chemistry.
[79] Alex Bateman,et al. The Systematic Functional Analysis of Plasmodium Protein Kinases Identifies Essential Regulators of Mosquito Transmission , 2010, Cell host & microbe.
[80] C. Doerig. Protein kinases regulating Plasmodium proliferation and development , 2005 .
[81] D O Morgan,et al. Cyclin-dependent kinases: engines, clocks, and microprocessors. , 1997, Annual review of cell and developmental biology.
[82] Frank Förster,et al. A kinome of 2600 in the ciliate Paramecium tetraurelia , 2009, FEBS letters.
[83] T. Hunter,et al. The Protein Kinase Complement of the Human Genome , 2002, Science.
[84] A. Sicard,et al. Disruption of the PfPK7 Gene Impairs Schizogony and Sporogony in the Human Malaria Parasite Plasmodium falciparum , 2007, Eukaryotic Cell.
[85] Tal Pupko,et al. GUIDANCE: a web server for assessing alignment confidence scores , 2010, Nucleic Acids Res..
[86] Jonathan E. Allen,et al. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii , 2002, Nature.
[87] B Franz Lang,et al. The tree of eukaryotes. , 2005, Trends in ecology & evolution.
[88] Kevin Cowtan,et al. research papers Acta Crystallographica Section D Biological , 2005 .
[89] Manoj T. Duraisingh,et al. A Plant-Like Kinase in Plasmodium falciparum Regulates Parasite Egress from Erythrocytes , 2010, Science.
[90] Shelby L. Bidwell,et al. Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa , 2007, PLoS pathogens.
[91] A. Sicard,et al. Malaria: targeting parasite and host cell kinomes. , 2010, Biochimica et biophysica acta.
[92] T. Dandekar,et al. Two nucleus‐localized CDK‐like kinases with crucial roles for malaria parasite erythrocytic replication are involved in phosphorylation of splicing factor , 2011, Journal of cellular biochemistry.
[93] Gerard Manning,et al. Structural and Functional Diversity of the Microbial Kinome , 2007, PLoS biology.
[94] N Srinivasan,et al. A genomic perspective of protein kinases in Plasmodium falciparum , 2004, Proteins.
[95] Brian D. Marsden,et al. The scientific impact of the Structural Genomics Consortium: a protein family and ligand-centered approach to medically-relevant human proteins , 2007, Journal of Structural and Functional Genomics.
[96] N. Hall,et al. Whole genome sequencing of a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants , 2009, Genome Biology.
[97] J. Mottram,et al. The cell cycle of parasitic protozoa: potential for chemotherapeutic exploitation. , 2003, Progress in cell cycle research.
[98] Oliver Billker,et al. Protein kinases as targets for antimalarial intervention: Kinomics, structure-based design, transmission-blockade, and targeting host cell enzymes. , 2005, Biochimica et biophysica acta.
[99] Feng Chen,et al. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups , 2005, Nucleic Acids Res..
[100] J. Endicott,et al. Cyclin-dependent kinase homologues of Plasmodium falciparum. , 2002, International journal for parasitology.
[101] Eileen Kraemer,et al. PlasmoDB: a functional genomic database for malaria parasites , 2008, Nucleic Acids Res..
[102] L. Sibley. Intracellular Parasite Invasion Strategies , 2004, Science.