Positive feedback in cellular control systems
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[1] D. Dubnau,et al. Bistability in the Bacillus subtilis K‐state (competence) system requires a positive feedback loop , 2005, Molecular microbiology.
[2] D. Lauffenburger,et al. Physicochemical modelling of cell signalling pathways , 2006, Nature Cell Biology.
[3] Pablo A. Iglesias,et al. MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast , 2007, Nature.
[4] S. Mangan,et al. Article number: 2005.0006 , 2022 .
[5] R. Goldberger. Autogenous Regulation of Gene Expression , 1974, Science.
[6] John Ian Ferrell,et al. Detection of multi-stability , 2004 .
[7] Farren J. Isaacs,et al. Prediction and measurement of an autoregulatory genetic module , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[8] J. Mckinney,et al. Microbial phenotypic heterogeneity and antibiotic tolerance. , 2007, Current opinion in microbiology.
[9] S. Leibler,et al. Biological rhythms: Circadian clocks limited by noise , 2000, Nature.
[10] Bernard Martin,et al. Induction of competence regulons as a general response to stress in gram-positive bacteria. , 2006, Annual review of microbiology.
[11] A. Goldbeter,et al. Bistability without Hysteresis in Chemical Reaction Systems: A Theoretical Analysis of Irreversible Transitions between Multiple Steady States , 1997 .
[12] Joachim O Rädler,et al. Basal expression rate of comK sets a ‘switching‐window’ into the K‐state of Bacillus subtilis , 2007, Molecular microbiology.
[13] J. Hoch,et al. Two-component signal transduction , 1995 .
[14] A. Goldbeter. Computational approaches to cellular rhythms , 2002, Nature.
[15] Michael J Rust,et al. References and Notes Supporting Online Material Materials and Methods Figs. S1 to S8 Tables S1 to S3 References Ordered Phosphorylation Governs Oscillation of a Three-protein Circadian Clock , 2022 .
[16] M. Savageau. Comparison of classical and autogenous systems of regulation in inducible operons , 1974, Nature.
[17] Hidde de Jong,et al. Modeling and Simulation of Genetic Regulatory Systems: A Literature Review , 2002, J. Comput. Biol..
[18] Oscar P. Kuipers,et al. Phenotypic variation in bacteria: the role of feedback regulation , 2006, Nature Reviews Microbiology.
[19] M. Buttner,et al. The vancomycin resistance VanRS two‐component signal transduction system of Streptomyces coelicolor , 2006, Molecular microbiology.
[20] U. Bhalla,et al. Emergent properties of networks of biological signaling pathways. , 1999, Science.
[21] Akinori Kato,et al. A connector of two-component regulatory systems promotes signal amplification and persistence of expression , 2007, Proceedings of the National Academy of Sciences.
[22] Ann M Stock,et al. Two-component signal transduction. , 2000, Annual review of biochemistry.
[23] M. Freeman. Feedback control of intercellular signalling in development , 2000, Nature.
[24] J. Demongeot,et al. Positive and negative feedback: striking a balance between necessary antagonists. , 2002, Journal of theoretical biology.
[25] S. Mangan,et al. Structure and function of the feed-forward loop network motif , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[26] D. Thieffry,et al. Dynamical behaviour of biological regulatory networks—I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state , 1995 .
[27] E. Robinson. Cybernetics, or Control and Communication in the Animal and the Machine , 1963 .
[28] Simon V. Avery,et al. Microbial cell individuality and the underlying sources of heterogeneity , 2006, Nature Reviews Microbiology.
[29] Akira Ishihama,et al. Transcriptional response of Escherichia coli to external copper , 2005, Molecular microbiology.
[30] Gürol M. Süel,et al. An excitable gene regulatory circuit induces transient cellular differentiation , 2006, Nature.
[31] A Goldbeter,et al. A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[32] J. Ferrell,et al. Bistability in the JNK cascade , 2001, Current Biology.
[33] S. Leibler,et al. Mechanisms of noise-resistance in genetic oscillators , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[34] U. Alon,et al. Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria , 2001, Science.
[35] K. Hellingwerf,et al. Autoamplification of a Two-Component Regulatory System Results in “Learning” Behavior , 2001, Journal of bacteriology.
[36] Guanghua Huang,et al. Bistable expression of WOR1, a master regulator of white–opaque switching in Candida albicans , 2006, Proceedings of the National Academy of Sciences.
[37] J. Claverys,et al. Development of competence in Streptococcus pneumoniae: pheromone autoinduction and control of quorum sensing by the oligopeptide permease , 1998, Molecular microbiology.
[38] E. Gilles,et al. Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coli. , 2004, Bio Systems.
[39] P. Lásló,et al. Multilineage Transcriptional Priming and Determination of Alternate Hematopoietic Cell Fates , 2006, Cell.
[40] M. Laub,et al. Specificity in two-component signal transduction pathways. , 2007, Annual review of genetics.
[41] M. Borodovsky,et al. Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system. , 2007, Journal of theoretical biology.
[42] J. Ferrell,et al. A positive-feedback-based bistable ‘memory module’ that governs a cell fate decision , 2003, Nature.
[43] U. Alon,et al. Just-in-time transcription program in metabolic pathways , 2004, Nature Genetics.
[44] John J. Tyson,et al. Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[45] Adam P. Arkin,et al. eScholarship Title Supplemental Data : Stochastic Gene Expression in a Lentiviral Positive Feedback Loop : HIV-1 Tat Fluctuations Drive Phenotypic Diversity Permalink , 2005 .
[46] Michael A. Savageau,et al. Significance of autogenously regulated and constitutive synthesis of regulatory proteins in repressible biosynthetic systems , 1975, Nature.
[47] A. Arkin,et al. Simulation of prokaryotic genetic circuits. , 1998, Annual review of biophysics and biomolecular structure.
[48] J. Raser,et al. Positive feedback regulates switching of phosphate transporters in S. cerevisiae. , 2007, Molecular cell.
[49] D. Dubnau,et al. Noise in Gene Expression Determines Cell Fate in Bacillus subtilis , 2007, Science.
[50] James R. Brown,et al. Evolution of two-component signal transduction. , 2000, Molecular biology and evolution.
[51] J. Tyson,et al. Regulation of the eukaryotic cell cycle: molecular antagonism, hysteresis, and irreversible transitions. , 2001, Journal of theoretical biology.
[52] D. Dubnau,et al. A ComGA‐dependent checkpoint limits growth during the escape from competence , 2001, Molecular microbiology.
[53] Uri Alon,et al. Response delays and the structure of transcription networks. , 2003, Journal of molecular biology.
[54] J. Tyson,et al. Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos. , 1993, Journal of cell science.
[55] Kwang-Hyun Cho,et al. Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways. , 2007, BioEssays : news and reviews in molecular, cellular and developmental biology.
[56] Corinne L Williams,et al. Autoregulation Is Essential for Precise Temporal and Steady-State Regulation by the Bordetella BvgAS Phosphorelay , 2006, Journal of bacteriology.
[57] James E. Ferrell,et al. Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. , 2001, Chaos.
[58] M. Mackey,et al. Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data. , 2003, Biophysical journal.
[59] J. Griffith. Mathematics of cellular control processes. II. Positive feedback to one gene. , 1968, Journal of theoretical biology.
[60] Oscar P Kuipers,et al. Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis , 2005, Molecular microbiology.
[61] D. Tzamarias,et al. A Yeast Catabolic Enzyme Controls Transcriptional Memory , 2007, Current Biology.
[62] U. Alon. Network motifs: theory and experimental approaches , 2007, Nature Reviews Genetics.
[63] A. Keller,et al. Model genetic circuits encoding autoregulatory transcription factors. , 1995, Journal of theoretical biology.
[64] Marc W. Kirschner,et al. Cyclin activation of p34 cdc2 , 1990, Cell.
[65] Araceli M. Huerta,et al. From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli. , 1998, BioEssays : news and reviews in molecular, cellular and developmental biology.
[66] Ertugrul M. Ozbudak,et al. Multistability in the lactose utilization network of Escherichia coli , 2004, Nature.
[67] J. Ferrell,et al. Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions , 2005, Science.
[68] B. Séraphin,et al. Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion , 2001, The EMBO journal.
[69] Mark Ptashne,et al. A Genetic Switch, Phage Lambda Revisited , 2004 .
[70] E. Groisman,et al. Making informed decisions: regulatory interactions between two-component systems. , 2003, Trends in microbiology.
[71] F. Cross,et al. Testing a mathematical model of the yeast cell cycle. , 2002, Molecular biology of the cell.
[72] J Jesty,et al. Mathematical analysis of activation thresholds in enzyme-catalyzed positive feedbacks: application to the feedbacks of blood coagulation. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[73] B. Müller-Hill. The lac Operon: A Short History of a Genetic Paradigm , 1996 .
[74] Katherine C. Chen,et al. Kinetic analysis of a molecular model of the budding yeast cell cycle. , 2000, Molecular biology of the cell.
[75] M. Inouye,et al. Histidine Kinases in Signal Transduction , 2002 .
[76] James E. Ferrell,et al. Systems-Level Dissection of the Cell-Cycle Oscillator: Bypassing Positive Feedback Produces Damped Oscillations , 2005, Cell.
[77] Alexander van Oudenaarden,et al. Stochastic Gene Expression: from Single Molecules to the Proteome This Review Comes from a Themed Issue on Chromosomes and Expression Mechanisms Edited Measuring Noise Mrna Fluctuations , 2022 .
[78] A. Arkin,et al. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. , 1998, Genetics.
[79] B. Slepchenko,et al. Cyclin aggregation and robustness of bio-switching. , 2003, Molecular biology of the cell.
[80] J. Collins,et al. Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.
[81] J E Ferrell,et al. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. , 1998, Science.
[82] Nicholas T Ingolia,et al. Topology and Robustness in the Drosophila Segment Polarity Network , 2004, PLoS biology.
[83] J. Hasty,et al. Synchronizing genetic relaxation oscillators by intercell signaling , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[84] Andreas Radbruch,et al. GATA-3 transcriptional imprinting in Th2 lymphocytes: A mathematical model , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[85] Eduardo A. Groisman,et al. The Pleiotropic Two-Component Regulatory System PhoP-PhoQ , 2001, Journal of bacteriology.
[86] R. Losick,et al. Bistability in bacteria , 2006, Molecular microbiology.
[87] James E. Ferrell,et al. The JNK Cascade as a Biochemical Switch in Mammalian Cells Ultrasensitive and All-or-None Responses , 2003, Current Biology.
[88] From bistability to oscillations in a model for the isocitrate dehydrogenase reaction. , 1998, Biophysical chemistry.
[89] Kathy Chen,et al. Network dynamics and cell physiology , 2001, Nature Reviews Molecular Cell Biology.
[90] Douglas A Lauffenburger,et al. Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis. , 2002, Development.
[91] F. Allgöwer,et al. Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis* , 2004, Journal of Biological Chemistry.
[92] Péter Érdi,et al. Mathematical Models of Chemical Reactions: Theory and Applications of Deterministic and Stochastic Models , 1989 .
[93] Dongwoo Shin,et al. A Positive Feedback Loop Promotes Transcription Surge That Jump-Starts Salmonella Virulence Circuit , 2006, Science.
[94] Sierd Bron,et al. Stripping Bacillus: ComK auto‐stimulation is responsible for the bistable response in competence development , 2005, Molecular microbiology.
[95] J E Ferrell,et al. How regulated protein translocation can produce switch-like responses. , 1998, Trends in biochemical sciences.
[96] J. Raser,et al. Noise in Gene Expression: Origins, Consequences, and Control , 2005, Science.
[97] Eduardo Sontag,et al. Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2 , 2003, Nature Cell Biology.
[98] T. Elston,et al. Stochasticity in gene expression: from theories to phenotypes , 2005, Nature Reviews Genetics.
[99] Jeff Hasty,et al. Designer gene networks: Towards fundamental cellular control. , 2001, Chaos.
[100] Cooperativity: a unified view. , 1997, Biochimica et biophysica acta.
[101] J. Ferrell. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. , 2002, Current opinion in cell biology.
[102] B. Slepchenko,et al. Bio-switches: what makes them robust? , 2004, Current opinion in genetics & development.
[103] M. Wall,et al. Design of gene circuits: lessons from bacteria , 2004, Nature Reviews Genetics.
[104] R. Rappuoli,et al. Positive transcriptional feedback at the bvg locus controls expression of virulence factors in Bordetella pertussis. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[105] F R Adler,et al. How to make a biological switch. , 2000, Journal of theoretical biology.
[106] Michael A Savageau,et al. Signalling network with a bistable hysteretic switch controls developmental activation of the σF transcription factor in Bacillus subtilis , 2006, Molecular microbiology.
[107] H. E. Umbarger,et al. Evidence for a negative-feedback mechanism in the biosynthesis of isoleucine. , 1956, Science.