Interpretable learning based Dynamic Graph Convolutional Networks for Alzheimer's Disease analysis

Abstract Graph Convolutional Networks (GCNs) are widely applied in classification tasks by aggregating the neighborhood information of each sample to output robust node embedding. However, conventional GCN methods do not update the graph during the training process so that their effectiveness is always influenced by the quality of the input graph. Moreover, previous GCN methods lack the interpretability to limit their real applications. In this paper, a novel personalized diagnosis technique is proposed for early Alzheimer’s Disease (AD) diagnosis via coupling interpretable feature learning with dynamic graph learning into the GCN architecture. Specifically, the module of interpretable feature learning selects informative features to provide interpretability for disease diagnosis and abandons redundant features to capture inherent correlation of data points. The module of dynamic graph learning adjusts the neighborhood relationship of every data point to output robust node embedding as well as the correlations of all data points to refine the classifier. The GCN module outputs diagnosis results based on the learned inherent graph structure. All three modules are jointly optimized to perform reliable disease diagnosis at an individual level. Experiments demonstrate that our method outputs competitive diagnosis performance as well as provide interpretability for personalized disease diagnosis.

[1]  Stefan Klein,et al.  Feature Selection Based on the SVM Weight Vector for Classification of Dementia , 2015, IEEE Journal of Biomedical and Health Informatics.

[2]  Chongqing Kang,et al.  Guiding Cascading Failure Search with Interpretable Graph Convolutional Network , 2020, ArXiv.

[3]  Hao Wang,et al.  A Clinical Decision Support Framework for Heterogeneous Data Sources , 2018, IEEE Journal of Biomedical and Health Informatics.

[4]  D. Shen,et al.  Joint prediction and time estimation of COVID-19 developing severe symptoms using chest CT scan , 2020, Medical Image Analysis.

[5]  Upmanu Lall,et al.  A Nearest Neighbor Bootstrap For Resampling Hydrologic Time Series , 1996 .

[6]  Changhe Shi,et al.  New Insights Into the Pathogenesis of Alzheimer's Disease , 2020, Frontiers in Neurology.

[7]  Shichao Zhang,et al.  Spectral clustering via half-quadratic optimization , 2019, World Wide Web.

[8]  Wei Chen,et al.  Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis. , 2014, Molecular bioSystems.

[9]  Patrick L. Combettes,et al.  Proximal Splitting Methods in Signal Processing , 2009, Fixed-Point Algorithms for Inverse Problems in Science and Engineering.

[10]  Tao Wang,et al.  Semi-Supervised Discriminative Classification Robust to Sample-Outliers and Feature-Noises , 2019, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[11]  S. Lehmann,et al.  Clinical and biomarker changes of Alzheimer's disease in adults with Down syndrome: a cross-sectional study , 2020, The Lancet.

[12]  S. Snyder,et al.  Hydrogen sulfide is neuroprotective in Alzheimer’s disease by sulfhydrating GSK3β and inhibiting Tau hyperphosphorylation , 2021, Proceedings of the National Academy of Sciences.

[13]  TanveerM.,et al.  Machine Learning Techniques for the Diagnosis of Alzheimer’s Disease , 2020 .

[14]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[15]  William T. Ralvenius,et al.  Modeling Alzheimer’s disease with iPSC-derived brain cells , 2019, Molecular Psychiatry.

[16]  Benjamin A. Logsdon,et al.  Integrating human brain proteomes with genome-wide association data implicates new proteins in Alzheimer’s disease pathogenesis , 2021, Nature Genetics.

[17]  Xiaofeng Zhu,et al.  Personalized Diagnosis for Alzheimer's Disease , 2017, MICCAI.

[18]  Dinggang Shen,et al.  Hierarchical Fully Convolutional Network for Joint Atrophy Localization and Alzheimer's Disease Diagnosis Using Structural MRI , 2020, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[19]  Heng Tao Shen,et al.  Heterogeneous data fusion for predicting mild cognitive impairment conversion , 2021, Inf. Fusion.

[20]  Bin Luo,et al.  Semi-Supervised Learning With Graph Learning-Convolutional Networks , 2019, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[21]  M. Beal,et al.  Reduced numbers of somatostatin receptors in the cerebral cortex in Alzheimer's disease. , 1985, Science.

[22]  Xiaofeng Zhu,et al.  Efficient Utilization of Missing Data in Cost-Sensitive Learning , 2019, IEEE Transactions on Knowledge and Data Engineering.

[23]  Dinggang Shen,et al.  Subspace Regularized Sparse Multitask Learning for Multiclass Neurodegenerative Disease Identification , 2016, IEEE Transactions on Biomedical Engineering.

[24]  Virginia M. Y. Lee,et al.  High-Contrast In Vivo Imaging of Tau Pathologies in Alzheimer’s and Non-Alzheimer’s Disease Tauopathies , 2020, Neuron.

[25]  S. H. Hojjati,et al.  Predicting conversion from MCI to AD using resting-state fMRI, graph theoretical approach and SVM , 2017, Journal of Neuroscience Methods.

[26]  Xiangnan He,et al.  Bilinear Graph Neural Network with Neighbor Interactions , 2020, IJCAI.

[27]  Daniel Rueckert,et al.  Multiple instance learning for classification of dementia in brain MRI , 2014, Medical Image Anal..

[28]  Heng Tao Shen,et al.  Half-Quadratic Minimization for Unsupervised Feature Selection on Incomplete Data , 2020, IEEE Transactions on Neural Networks and Learning Systems.

[29]  Max Welling,et al.  Semi-Supervised Classification with Graph Convolutional Networks , 2016, ICLR.

[30]  David T. Jones,et al.  New insights into atypical Alzheimer's disease in the era of biomarkers , 2021, The Lancet Neurology.

[31]  Dinggang Shen,et al.  Inter-modality relationship constrained multi-modality multi-task feature selection for Alzheimer's Disease and mild cognitive impairment identification , 2014, NeuroImage.

[32]  Clifford R. Jack,et al.  Associations of quantitative susceptibility mapping with Alzheimer’s disease clinical and imaging markers , 2020, NeuroImage.

[33]  Yonghua Zhu,et al.  Unsupervised Spectral Feature Selection With Dynamic Hyper-Graph Learning , 2022, IEEE Transactions on Knowledge and Data Engineering.

[34]  Feiping Nie,et al.  Proceedings of the Twenty-Third International Joint Conference on Artificial Intelligence Exact Top-k Feature Selection via ℓ2,0-Norm Constraint , 2022 .

[35]  Sheng-hua Zhong,et al.  Dynamic graph convolutional network for multi-video summarization , 2020, Pattern Recognit..

[36]  Xiaofeng Zhu,et al.  Robust SVM with adaptive graph learning , 2019, World Wide Web.

[37]  Xuelong Li,et al.  Generalized Uncorrelated Regression with Adaptive Graph for Unsupervised Feature Selection , 2019, IEEE Transactions on Neural Networks and Learning Systems.

[38]  Hongtu Zhu,et al.  D-CCA: A Decomposition-Based Canonical Correlation Analysis for High-Dimensional Datasets , 2020, Journal of the American Statistical Association.

[39]  Jamie L. Marshall,et al.  Disease-associated astrocytes in Alzheimer’s disease and aging , 2020, Nature Neuroscience.

[40]  José Fco. Martínez-Trinidad,et al.  A review of unsupervised feature selection methods , 2019, Artificial Intelligence Review.

[41]  Xiaoping Zhou,et al.  Development and validation of an interpretable deep learning framework for Alzheimer’s disease classification , 2020, Brain : a journal of neurology.

[42]  Saad Rehman,et al.  A deep CNN based multi-class classification of Alzheimer's disease using MRI , 2017, 2017 IEEE International Conference on Imaging Systems and Techniques (IST).

[43]  Deng Cai,et al.  Laplacian Score for Feature Selection , 2005, NIPS.

[44]  Liang Chen,et al.  Multi-modal classification of Alzheimer's disease using nonlinear graph fusion , 2017, Pattern Recognit..

[45]  Chong Wang,et al.  Attention-based Graph Neural Network for Semi-supervised Learning , 2018, ArXiv.

[46]  Zi Huang,et al.  Proceedings of the Twenty-Second International Joint Conference on Artificial Intelligence ℓ2,1-Norm Regularized Discriminative Feature Selection for Unsupervised Learning , 2022 .

[47]  Guorong Wu,et al.  Brain functional connectivity analysis based on multi-graph fusion , 2021, Medical Image Anal..