Bibliography of Segmentation in Neuroimaging

Reference for segmentation in neuroimaging are collected. Both tissue segmentation and parcellation is included. This structured bibliography is part of a larger collection of bibliographies see http://www.imm.dtu.dk/~fn/bib/Nielsen2001Bib/. The bibliography is written in L ATEX and BIBTeX and should be available both as HTML and PostScript. The bibliography is probably far from complete, but new references are added whenever the author flnds new material and has the time to add them. You can email the author if corrections are required or you have found some reference that you fell ought to be included: fn@imm.dtu.dk.

[1]  Jennifer L. Cuzzocreo,et al.  Volumetric neuroimage analysis extensions for the MIPAV software package , 2007, Journal of Neuroscience Methods.

[2]  Zujun Hou,et al.  A Review on MR Image Intensity Inhomogeneity Correction , 2006, Int. J. Biomed. Imaging.

[3]  Bennett A. Landman,et al.  Statistical parametric mapping of brain morphology: Sensitivity is dramatically increased by using brain-extracted images as inputs , 2006, NeuroImage.

[4]  Dinggang Shen,et al.  Automated segmentation of white matter lesions in 3D brain MR images, using multivariate pattern classification , 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

[5]  K. Amunts,et al.  The human parietal operculum. II. Stereotaxic maps and correlation with functional imaging results. , 2006, Cerebral cortex.

[6]  A. Schleicher,et al.  The human parietal operculum. I. Cytoarchitectonic mapping of subdivisions. , 2006, Cerebral cortex.

[7]  Gregory G. Brown,et al.  Quantitative evaluation of automated skull‐stripping methods applied to contemporary and legacy images: Effects of diagnosis, bias correction, and slice location , 2006, Human brain mapping.

[8]  Johan H. C. Reiber,et al.  Fully automatic segmentation of white matter hyperintensities in MR images of the elderly , 2005, NeuroImage.

[9]  Satrajit S. Ghosh,et al.  Mindboggle: Automated brain labeling with multiple atlases , 2005, BMC Medical Imaging.

[10]  Karl J. Friston,et al.  Unified segmentation , 2005, NeuroImage.

[11]  Simon B. Eickhoff,et al.  A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data , 2005, NeuroImage.

[12]  Olaf B. Paulson,et al.  MR-based automatic delineation of volumes of interest in human brain PET images using probability maps , 2005, NeuroImage.

[13]  Arno Klein,et al.  Mindboggle: a scatterbrained approach to automate brain labeling , 2005, NeuroImage.

[14]  Yaonan Wang,et al.  Segmentation Method of MRI Using Fuzzy Gaussian Basis Neural Network , 2005 .

[15]  Wei Sun.  Segmentation Method of MRI Using Fuzzy Gaussian Basis Neural Network , 2005 .

[16]  Barbara Romaniuk,et al.  Segmentation of anatomical structures from 3D brain MRI using automatically-built statistical shape models , 2004, 2004 International Conference on Image Processing, 2004. ICIP '04..

[17]  Arthur W. Toga,et al.  A meta-algorithm for brain extraction in MRI , 2004, NeuroImage.

[18]  A. M. Dale,et al.  A hybrid approach to the skull stripping problem in MRI , 2004, NeuroImage.

[19]  David A. Rottenberg,et al.  Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes , 2004, NeuroImage.

[20]  Paul M. Thompson,et al.  A deformable Brodmann area atlas , 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

[21]  Lars Kai Hansen,et al.  Finding related functional neuroimaging volumes , 2004, Artif. Intell. Medicine.

[22]  C. Bohm,et al.  A computerized adjustable brain atlas , 2004, European Journal of Nuclear Medicine.

[23]  Max A. Viergever,et al.  Automated White Matter Lesion Segmentation by Voxel Probability Estimation , 2003, MICCAI.

[24]  Roberto Toro,et al.  Geometric atlas: modeling the cortex as an organized surface , 2003, NeuroImage.

[25]  Oliver Schmitt,et al.  Detection of cortical transition regions utilizing statistical analyses of excess masses , 2003, NeuroImage.

[26]  Joan Serra,et al.  Image segmentation , 2003, Proceedings 2003 International Conference on Image Processing (Cat. No.03CH37429).

[27]  Roman Goldenberg,et al.  Cortex segmentation: a fast variational geometric approach , 2002, IEEE Transactions on Medical Imaging.

[28]  Stephen M Smith,et al.  Fast robust automated brain extraction , 2002, Human brain mapping.

[29]  Alan C. Evans,et al.  Automatic Generation of Training Data for Brain Tissue Classification from MRI , 2002, MICCAI.

[30]  John Duncan,et al.  Implementation and application of a brain template for multiple volumes of interest , 2002, Human brain mapping.

[31]  A K Banerjee.  VOXEL-MAN 3D-Navigator. Brain and skull. Regional, functional and radiological anatomy (2nd edn). CD-ROM. By K-H Höhne et al, 2001 (Springer-Verlag, Heidelberg), £56.40 ISBN 3-540-14910-4 , 2002 .

[32]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[33]  Jonas Larsson,et al.  Imaging vision : Functional mapping of intermediate visual processes in man , 2001 .

[34]  K. E. Stephan,et al.  Multimodal characterisation of cortical areas by multivariate analyses of receptor binding and connectivity data , 2001, Anatomy and Embryology.

[35]  Koenraad Van Leemput,et al.  Automated segmentation of multiple sclerosis lesions by model outlier detection , 2001, IEEE Transactions on Medical Imaging.

[36]  Vincent Magnotta,et al.  Methods for a refined automated cortical parcellation procedure , 2001, NeuroImage.

[37]  H. Benali,et al.  BrainVISA: Software platform for visualization and analysis of multi-modality brain data , 2001, NeuroImage.

[38]  Arno Klein,et al.  Automatic labeling of brain anatomy and FMRI brain activity , 2001, NeuroImage.

[39]  Michael Brady,et al.  A statistical framework for automatic brain MR image segmentation , 2001, NeuroImage.

[40]  Jeih-San Liow,et al.  Evaluation of six algorithms for correcting intensity non-uniformity effects in MRI volumes , 2001, NeuroImage.

[41]  Koen Van Leemput,et al.  Quantitative analysis of signal abnormalities in MR imaging for multiple sclerosis and creutzfeldt-jakob disease , 2001 .

[42]  Jeih-San Liow,et al.  Qualitative and Quantitative Evaluation of Six Algorithms for Correcting Intensity Nonuniformity Effects , 2001, NeuroImage.

[43]  R. Leahy,et al.  Magnetic Resonance Image Tissue Classification Using a Partial Volume Model , 2001, NeuroImage.

[44]  P. Morosan,et al.  Probabilistic Mapping and Volume Measurement of Human Primary Auditory Cortex , 2001, NeuroImage.

[45]  P. Morosan,et al.  Human Primary Auditory Cortex: Cytoarchitectonic Subdivisions and Mapping into a Spatial Reference System , 2001, NeuroImage.

[46]  Faculteit Geneeskunde,et al.  Quantitative Analysis of Signal Abnormalities in MR Imaging , 2001 .

[47]  David N. Kennedy,et al.  Brain atlas for functional imaging : clinical and research applications , 2001 .

[48]  Stephen M. Smith,et al.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm , 2001, IEEE Transactions on Medical Imaging.

[49]  Anders M. Dale,et al.  Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex , 2001, IEEE Transactions on Medical Imaging.

[50]  Vincent A Magnotta,et al.  Cerebral cortex: a topographic segmentation method using magnetic resonance imaging , 2000, Psychiatry Research: Neuroimaging.

[51]  Mohamed-Jalal Fadili,et al.  Phantom-based performance evaluation: Application to brain segmentation from magnetic resonance images , 2000, Medical Image Anal..

[52]  K Amunts,et al.  A stereological approach to human cortical architecture: identification and delineation of cortical areas , 2000, Journal of Chemical Neuroanatomy.

[53]  A M Dale,et al.  Measuring the thickness of the human cerebral cortex from magnetic resonance images. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Alan C. Evans,et al.  Automated 3-D Extraction of Inner and Outer Surfaces of Cerebral Cortex from MRI , 2000, NeuroImage.

[55]  M S Cohen,et al.  Rapid and effective correction of RF inhomogeneity for high field magnetic resonance imaging , 2000, Human brain mapping.

[56]  J L Lancaster,et al.  Automated Talairach Atlas labels for functional brain mapping , 2000, Human brain mapping.

[57]  Stephen M. Smith,et al.  Hidden Markov random field model and segmentation of brain MR images , 2001 .

[58]  Karl J. Friston,et al.  Voxel-Based Morphometry—The Methods , 2000, NeuroImage.

[59]  K. Zilles,et al.  An automated method to reconstruct the surface of the cerebral cortex from 3D MR data , 2000, NeuroImage.

[60]  Peter Kochunov,et al.  Automatic talairach labels for functional activation sites , 2000, NeuroImage.

[61]  Stephen M. Smith,et al.  Robust automated brain extraction , 2000, NeuroImage.

[62]  Paul Suetens,et al.  Automated segmentation of MS lesions in MR , 2000, NeuroImage.

[63]  A Zavaljevski,et al.  Multi-level adaptive segmentation of multi-parameter MR brain images. , 2000, Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society.

[64]  Daniel S. O'Leary,et al.  An MRI-Based Parcellation Method for the Temporal Lobe , 2000, NeuroImage.

[65]  Martin Styner,et al.  Parametric estimate of intensity inhomogeneities applied to MRI , 2000, IEEE Transactions on Medical Imaging.

[66]  K. Amunts,et al.  Brodmann's Areas 17 and 18 Brought into Stereotaxic Space—Where and How Variable? , 2000, NeuroImage.

[67]  David A. Rottenberg,et al.  Semi-automated stripping of T1 MRI volumes: I. Consensus of intensity-and edge-based methods , 1999 .

[68]  Daniel S. O'Leary,et al.  Human Frontal Cortex: An MRI-Based Parcellation Method , 1999, NeuroImage.

[69]  Koenraad Van Leemput,et al.  Automated model-based bias field correction of MR images of the brain , 1999, IEEE Transactions on Medical Imaging.

[70]  Robert T. Schultz,et al.  Segmentation and Measurement of the Cortex from 3D MR Images , 1998, MICCAI.

[71]  Koenraad Van Leemput,et al.  Automated model-based tissue classification of MR images of the brain , 1999, IEEE Transactions on Medical Imaging.

[72]  A. Schleicher,et al.  Broca's region revisited: Cytoarchitecture and intersubject variability , 1999, The Journal of comparative neurology.

[73]  D. Louis Collins,et al.  ANIMAL+INSECT: Improved Cortical Structure Segmentation , 1999, IPMI.

[74]  Lars Kai Hansen,et al.  Enhancing the Multivariate Signal of [15O] water PET Studies with a New Non-Linear Neuroanatomical Registration Algorithm , 1999, IEEE Trans. Medical Imaging.

[75]  D. Louis Collins,et al.  Automated extraction and variability analysis of sulcal neuroanatomy , 1999, IEEE Transactions on Medical Imaging.

[76]  A. Dale,et al.  Cortical Surface-Based Analysis II: Inflation, Flattening, and a Surface-Based Coordinate System , 1999, NeuroImage.

[77]  Anders M. Dale,et al.  Cortical Surface-Based Analysis I. Segmentation and Surface Reconstruction , 1999, NeuroImage.

[78]  P. Morosan,et al.  Observer-Independent Method for Microstructural Parcellation of Cerebral Cortex: A Quantitative Approach to Cytoarchitectonics , 1999, NeuroImage.

[79]  N C Andreasen,et al.  Improving tissue classification in MRI: a three-dimensional multispectral discriminant analysis method with automated training class selection. , 1999, Journal of computer assisted tomography.

[80]  L. Garey.  Brodmann's localisation in the cerebral cortex , 1999 .

[81]  A. Dale,et al.  High‐resolution intersubject averaging and a coordinate system for the cortical surface , 1999, Human brain mapping.

[82]  S. Resnick,et al.  An image-processing system for qualitative and quantitative volumetric analysis of brain images. , 1998, Journal of computer assisted tomography.

[83]  John Ashburner,et al.  MRI Sensitivity Correction and Tissue Classification , 1998, NeuroImage.

[84]  Alan C. Evans,et al.  3D Anatomical Atlas of the Human Brain , 1998, NeuroImage.

[85]  K. Amunts,et al.  Cytoarchitectonic Definition of Broca's Region and it's Role in Functions Different from Speech , 1998, NeuroImage.

[86]  Richard A. Robb,et al.  Optimized homomorphic unsharp masking for MR grayscale inhomogeneity correction , 1998, IEEE Transactions on Medical Imaging.

[87]  Alan C. Evans,et al.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data , 1998, IEEE Transactions on Medical Imaging.

[88]  M. Stella Atkins,et al.  Fully automatic segmentation of the brain in MRI , 1998, IEEE Transactions on Medical Imaging.

[89]  Jack L. Lancaster,et al.  The Talairach Daemon a database server for talairach atlas labels , 1997 .

[90]  Michael I. Miller,et al.  Volumetric transformation of brain anatomy , 1997, IEEE Transactions on Medical Imaging.

[91]  J. Ashburner,et al.  Multimodal Image Coregistration and Partitioning—A Unified Framework , 1997, NeuroImage.

[92]  Alan C. Evans,et al.  A Comparison of Retrospective Intensity Non-uniformity Correction Methods for MRI , 1997, IPMI.

[93]  Michael Brady,et al.  Estimating the bias field of MR images , 1997, IEEE Transactions on Medical Imaging.

[94]  Nick C Fox,et al.  Interactive algorithms for the segmentation and quantitation of 3-D MRI brain scans. , 1997, Computer methods and programs in biomedicine.

[95]  Guy Marchal,et al.  Multimodality image registration by maximization of mutual information , 1997, IEEE Transactions on Medical Imaging.

[96]  Richard M. Leahy,et al.  Surface-based labeling of cortical anatomy using a deformable atlas , 1997, IEEE Transactions on Medical Imaging.

[97]  G. Paxinos,et al.  Atlas of the Human Brain , 2000 .

[98]  J C Mazziotta,et al.  Automated labeling of the human brain: A preliminary report on the development and evaluation of a forward‐transform method , 1997, Human brain mapping.

[99]  Alan C. Evans,et al.  BrainWeb: Online Interface to a 3D MRI Simulated Brain Database , 1997 .

[100]  David Metcalf,et al.  A Digital Brain Atlas for Surgical Planning, Model-Driven Segmentation, and Teaching , 1996, IEEE Trans. Vis. Comput. Graph..

[101]  A. Schleicher,et al.  Two different areas within the primary motor cortex of man , 1996, Nature.

[102]  Cytoarchitectonic mapping of cortical areas on the first transverse temporal gyrus and intersubject variability , 1996, NeuroImage.

[103]  Alan C. Evans,et al.  Automatic 3D Regional MRI Segmentation and Statistical Probability Anatomy Maps , 1996 .

[104]  H A Drury,et al.  Computational methods for reconstructing and unfolding the cerebral cortex. , 1995, Cerebral cortex.

[105]  L Thurfjell,et al.  CBA--an atlas-based software tool used to facilitate the interpretation of neuroimaging data. , 1995, Computer methods and programs in biomedicine.

[106]  Raghu Raghavan,et al.  Talairach-Tournoux/Schaltenbrand-Wahren Based Electronic Brain Atlas System , 1995, CVRMed.

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[108]  D. Louis Collins,et al.  Automatic 3‐D model‐based neuroanatomical segmentation , 1995 .

[109]  D. Louis Collins,et al.  Model-based 3-D segmentation of multiple sclerosis lesions in magnetic resonance brain images , 1995, IEEE Trans. Medical Imaging.

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