Gene expression associated with changes in cold tolerance levels of the Antarctic springtail, Cryptopygus antarcticus

The ability of the Antarctic microarthropod Cryptopygus antarcticus (Collembola, Isotomidae) to survive low temperatures has been well studied at the physiological level, with recent investigations indicating the importance of the moulting process in conferring this ability. This study investigated gene expression in groups of C. antarcticus that have distinct differences in their ability to survive low temperatures. A microarray containing c. 5400 C. antarcticus expressed sequence tags was used to investigate gene expression differences between groups of animals with different supercooling points (SCP), and to low temperatures close to their SCP. By demonstrating the involvement of moult‐related genes in the differential survival of two groups of C. antarcticus with distinct SCP profiles, the results of this investigation add support to the suggestion that moulting plays a role in conferring cold tolerance in C. antarcticus.

[1]  Juan Miguel García-Gómez,et al.  BIOINFORMATICS APPLICATIONS NOTE Sequence analysis Manipulation of FASTQ data with Galaxy , 2005 .

[2]  M. Worland Factors that influence freezing in the sub-Antarctic springtail Tullbergia antarctica. , 2005, Journal of insect physiology.

[3]  J. Baust,et al.  Review—Insect cold hardiness: Facts and fancy , 1985 .

[4]  Gordon K. Smyth,et al.  limma: Linear Models for Microarray Data , 2005 .

[5]  P. Convey THE INFLUENCE OF ENVIRONMENTAL CHARACTERISTICS ON LIFE HISTORY ATTRIBUTES OF ANTARCTIC TERRESTRIAL BIOTA , 1996 .

[6]  S Rozen,et al.  Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.

[7]  E. Sage,et al.  SPARC, a matricellular protein that functions in cellular differentiation and tissue response to injury. , 2001, The Journal of clinical investigation.

[8]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[9]  William Block,et al.  Cold tolerance of insects and other arthropods. , 1990 .

[10]  Brent J Sinclair,et al.  Diurnal variation in supercooling points of three species of Collembola from Cape Hallett, Antarctica. , 2003, Journal of insect physiology.

[11]  W. Block,et al.  Cold Hardiness of Collembola at Signy Island, Maritime Antarctic , 1982 .

[12]  Gordon K. Smyth,et al.  Use of within-array replicate spots for assessing differential expression in microarray experiments , 2005, Bioinform..

[13]  Terry Speed,et al.  Normalization of cDNA microarray data. , 2003, Methods.

[14]  M. Worland,et al.  Desiccation stress at sub-zero temperatures in polar terrestrial arthropods. , 2003, Journal of insect physiology.

[15]  J. Schwarzbauer,et al.  The Caenorhabditis elegans homologue of the extracellular calcium binding protein SPARC/osteonectin affects nematode body morphology and mobility. , 1993, Molecular biology of the cell.

[16]  V. P. Collins,et al.  Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis. , 2003, Nucleic acids research.

[17]  S. O. Andersen Studies on proteins in post-ecdysial nymphal cuticle of locust, Locusta migratoria, and cockroach, Blaberus craniifer. , 2000, Insect biochemistry and molecular biology.

[18]  S. Fraichard,et al.  Characterization of a putative extracellular matrix protein from the beetle Tenebrio molitor: hormonal regulation during metamorphosis , 2004, Development Genes and Evolution.

[19]  Helen J. Peat,et al.  Soil arthropods as indicators of water stress in Antarctic terrestrial habitats? , 2003 .

[20]  D. Denlinger,et al.  A Rapid Cold-Hardening Process in Insects , 1987, Science.

[21]  G. Burns,et al.  Cold hardening processes in the Antarctic springtail, Cryptopygus antarcticus: clues from a microarray. , 2008, Journal of insect physiology.

[22]  L. Riddiford,et al.  Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes. , 1988, Journal of molecular biology.

[23]  Gordon K Smyth,et al.  Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2004, Statistical applications in genetics and molecular biology.

[24]  G. Burns,et al.  Surviving the cold: molecular analyses of insect cryoprotective dehydration in the Arctic springtail Megaphorura arctica (Tullberg) , 2009, BMC Genomics.

[25]  M. Worland,et al.  Partial desiccation induced by sub-zero temperatures as a component of the survival strategy of the Arctic collembolan Onychiurus arcticus (Tullberg). , 1998, Journal of insect physiology.

[26]  Steven L. Chown,et al.  Supercooling point frequency distributions in Collembola are affected by moulting , 2006 .

[27]  P. Convey,et al.  The significance of the moult cycle to cold tolerance in the Antarctic collembolan Cryptopygus antarcticus. , 2008, Journal of insect physiology.

[28]  J. Willis,et al.  4.2 – Cuticular Proteins , 2005 .

[29]  G. Horgan,et al.  Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR , 2002 .

[30]  P. Convey,et al.  Rapid cold hardening in Antarctic microarthropods , 2001 .

[31]  R. Cannon,et al.  COLD TOLERANCE OF MICROARTHROPODS , 1988 .

[32]  P. Montiel Profiles of soluble carbohydrates and their adaptive role in maritime Antarctic terrestrial arthropods , 1998, Polar Biology.

[33]  Gordon K. Smyth,et al.  A comparison of background correction methods for two-colour microarrays , 2007, Bioinform..

[34]  J. Bale Insects and low temperatures: from molecular biology to distributions and abundance. , 2002, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[35]  W. Cheng,et al.  Peroxinectin gene transcription of the giant freshwater prawn Macrobrachium rosenbergii under intrinsic, immunostimulant, and chemotherapeutant influences. , 2007, Fish & shellfish immunology.

[36]  P. Convey,et al.  Seasonal and long-term variation in body-water content of an Antarctic springtail – a response to climate change? , 2001, Polar Biology.

[37]  Eugene V Koonin,et al.  Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation , 2006, Biology Direct.