SEG - A Software Program for Finding Somatic Copy Number Alterations in Whole Genome Sequencing Data of Cancer
暂无分享,去创建一个
Jie Tang | Deli Liu | Yuan Feng | Shaying Zhao | Paul Schliekelman | Kevin K. Dobbin | Mucheng Zhang | Tianfang Wang | Shaying Zhao | K. Dobbin | Tianfang Wang | Jie Tang | Deli Liu | Mucheng Zhang | P. Schliekelman | Yuan Feng
[1] Shaying Zhao,et al. Canine Spontaneous Head and Neck Squamous Cell Carcinomas Represent Their Human Counterparts at the Molecular Level , 2015, PLoS genetics.
[2] Shaying Zhao,et al. Molecular homology and difference between spontaneous canine mammary cancer and human breast cancer. , 2014, Cancer research.
[3] Shaying Zhao,et al. Cancer driver candidate genes AVL9, DENND5A and NUPL1 contribute to MDCK cystogenesis , 2014, Oncoscience.
[4] T. Yeatman,et al. Copy number abnormalities in sporadic canine colorectal cancers. , 2010, Genome research.
[5] Ebrahim Afyounian,et al. Segmentum: a tool for copy number analysis of cancer genomes , 2017, BMC Bioinformatics.
[6] M. Wigler,et al. Circular binary segmentation for the analysis of array-based DNA copy number data. , 2004, Biostatistics.
[7] James A. Cuff,et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog , 2005, Nature.
[8] Shaying Zhao,et al. Cancer driver-passenger distinction via sporadic human and dog cancer comparison: a proof of principle study with colorectal cancer , 2013, Oncogene.
[9] Guoqing Wang,et al. Comprehensive characterization of the genomic alterations in human gastric cancer , 2015, International journal of cancer.
[10] Mark D. Johnson,et al. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion , 2011, Proceedings of the National Academy of Sciences.
[11] M. Gerstein,et al. CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing. , 2011, Genome research.
[12] Tatiana Popova,et al. Supplementary Methods , 2012, Acta Neuropsychiatrica.
[13] Aman N. Patel,et al. CONSERTING: integrating copy-number analysis with structural-variation detection , 2015, Nature Methods.
[14] Eric J Duncavage,et al. Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches. , 2013, Cancer genetics.
[15] Steven J. M. Jones,et al. Comprehensive molecular portraits of human breast tumors , 2012, Nature.
[16] T. Richmond,et al. Methods in high-resolution, array-based comparative genomic hybridization. , 2007, Methods in molecular biology.
[17] Derek Y. Chiang,et al. The landscape of somatic copy-number alteration across human cancers , 2010, Nature.
[18] A. Børresen-Dale,et al. COMPLEX LANDSCAPES OF SOMATIC REARRANGEMENT IN HUMAN BREAST CANCER GENOMES , 2009, Nature.
[19] Sampsa Hautaniemi,et al. Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data , 2015, Briefings Bioinform..
[20] A. Kallioniemi. CGH microarrays and cancer. , 2008, Current opinion in biotechnology.
[21] S. Gabriel,et al. Pan-cancer patterns of somatic copy-number alteration , 2013, Nature Genetics.
[22] Aleix Prat Aparicio. Comprehensive molecular portraits of human breast tumours , 2012 .
[23] N. Navin,et al. Clonal Evolution in Breast Cancer Revealed by Single Nucleus Genome Sequencing , 2014, Nature.
[24] Kai Wang,et al. PennCNV in whole-genome sequencing data , 2017, BMC Bioinformatics.
[25] Steven J. M. Jones,et al. Comprehensive molecular characterization of human colon and rectal cancer , 2012, Nature.
[26] D. Mccormick. Sequence the Human Genome , 1986, Bio/Technology.
[27] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[28] J. Troge,et al. Tumour evolution inferred by single-cell sequencing , 2011, Nature.
[29] Benjamin J. Raphael,et al. Expanding the computational toolbox for mining cancer genomes , 2014, Nature Reviews Genetics.