Multiple single nucleotide polymorphisms in the human urate transporter 1 (hURAT1) gene are associated with hyperuricaemia in Han Chinese

Objective The present study investigated whether single nucleotide polymorphisms (SNPs) in the human urate transporter 1 (hURAT1) gene are associated with primary hyperuricaemia (HUA) in Han Chinese people. Methods A total of 538 subjects (215 cases and 323 control subjects) were recruited from Qingdao, China. SNPs in potentially functional regions of the gene were identified and genotypes determined by direct sequencing. Association analyses were conducted using Fisher's exact test and logistic regression assuming a genotype model. Results By sequencing the promoter, 10 exons, and the exon-intron junctions of the hURAT1 gene, 14 SNPs were identified. Two of the SNPs identified were associated with susceptibility to HUA. The first was a rare intron 3 (11 G→A) SNP (p=0.0005), where carriers of the ‘A’ allele had a 3.4-fold (95% CI 1.67 to 6.93) increased risk of HUA. The second was a common exon 8 (T1309C) SNP (rs7932775), where carriers of one and two ‘C’ alleles had respective fold increased risks of 1.64 (95% CI 1.07 to 2.52) and 2.32 (95% CI 1.37 to 3.95). These SNPs had a joint additive effect of risk of HUA, with those individuals carrying at least one ‘A’ allele at the intron 3 SNP and two ‘C’ alleles at rs7932775 having a 5.88-fold (95% CI 1.25 to 15.57) increased risk of HUA in comparison to those with no risk alleles. Conclusion In conjunction with other studies, our results suggest that there are multiple genetic variants within or near hURAT1 that are associated with susceptibility to HUA in Han Chinese, including a novel SNP located in intron 3.

[1]  C. Gieger,et al.  Meta-Analysis of 28,141 Individuals Identifies Common Variants within Five New Loci That Influence Uric Acid Concentrations , 2009, PLoS genetics.

[2]  M. Guan,et al.  High‐resolution melting analysis for the rapid detection of an intronic single nucleotide polymorphism in SLC22A12 in male patients with primary gout in China , 2009, Scandinavian journal of rheumatology.

[3]  J. Choe,et al.  T6092C polymorphism of SLC22A12 gene is associated with serum uric acid concentrations in Korean male subjects. , 2008, Clinica chimica acta; international journal of clinical chemistry.

[4]  A. Hofman,et al.  Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study , 2008, The Lancet.

[5]  Shi-hua Zhao,et al.  Dietary and lifestyle changes associated with high prevalence of hyperuricemia and gout in the Shandong coastal cities of Eastern China. , 2008, The Journal of rheumatology.

[6]  S. Bandinelli,et al.  The GLUT9 Gene Is Associated with Serum Uric Acid Levels in Sardinia and Chianti Cohorts , 2007, PLoS genetics.

[7]  K. Teruya,et al.  Association between intronic SNP in urate-anion exchanger gene, SLC22A12, and serum uric acid levels in Japanese. , 2006, Life sciences.

[8]  Hyon K. Choi,et al.  Pathogenesis of Gout , 2005, Annals of Internal Medicine.

[9]  H. Cheong,et al.  Mutational analysis of idiopathic renal hypouricemia in Korea , 2005, Pediatric Nephrology.

[10]  G. Abecasis,et al.  A note on exact tests of Hardy-Weinberg equilibrium. , 2005, American journal of human genetics.

[11]  M. Hediger,et al.  Molecular physiology of urate transport. , 2005, Physiology.

[12]  M. Daly,et al.  Haploview: analysis and visualization of LD and haplotype maps , 2005, Bioinform..

[13]  Y. Kokubo,et al.  A high prevalence of renal hypouricemia caused by inactive SLC22A12 in Japanese. , 2004, Kidney international.

[14]  R. Terkeltaub Clinical practice. Gout. , 2003, The New England journal of medicine.

[15]  Hirotaka Matsuo,et al.  Molecular identification of a renal urate–anion exchanger that regulates blood urate levels , 2002, Nature.

[16]  A. Kornblihtt,et al.  Alternative splicing: multiple control mechanisms and involvement in human disease. , 2002, Trends in genetics : TIG.

[17]  D. Schaid,et al.  Score tests for association between traits and haplotypes when linkage phase is ambiguous. , 2002, American journal of human genetics.

[18]  M. O’Connell,et al.  The many roles of an RNA editor , 2001, Nature Reviews Genetics.

[19]  G. Gamba Alternative splicing and diversity of renal transporters. , 2001, American journal of physiology. Renal physiology.

[20]  M. Garcia-Blanco,et al.  Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing. , 2001, Gene.

[21]  H. Schumacher,et al.  Gout: can management be improved? , 2001, Current opinion in rheumatology.

[22]  B. Graveley Alternative splicing: increasing diversity in the proteomic world. , 2001, Trends in genetics : TIG.

[23]  Jean-Charles Sanchez,et al.  Proteomics: new perspectives, new biomedical opportunities , 2000, The Lancet.

[24]  D. Black Protein Diversity from Alternative Splicing A Challenge for Bioinformatics and Post-Genome Biology , 2000, Cell.

[25]  S Audic,et al.  Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clustering. , 1998, Genome research.

[26]  R. Reed,et al.  Initial splice-site recognition and pairing during pre-mRNA splicing. , 1996, Current opinion in genetics & development.

[27]  F. Zindy,et al.  Alternative reading frames of the INK4a tumor suppressor gene encode two unrelated proteins capable of inducing cell cycle arrest , 1995, Cell.

[28]  S. Berget Exon Recognition in Vertebrate Splicing (*) , 1995, The Journal of Biological Chemistry.

[29]  J. Paolino,et al.  Evidence for a postsecretory reabsorptive site for uric acid in man. , 1973, The Journal of clinical investigation.

[30]  R. Berliner,et al.  The renal mechanism for urate excretion in man. , 1950, The Journal of clinical investigation.

[31]  G. Giebisch,et al.  TRANSPORT OF UREA, GLUCOSE, PHOSPHATE, CALCIUM, MAGNESIUM, AND ORGANIC SOLUTES , 2009 .

[32]  C. Gieger,et al.  SLC2A9 influences uric acid concentrations with pronounced sex-specific effects , 2008, Nature Genetics.

[33]  William A. Richardson,et al.  SLC2A9 is a newly identified urate transporter influencing serum urate concentration, urate excretion and gout , 2008, Nature Genetics.

[34]  J. Graessler,et al.  Association of the human urate transporter 1 with reduced renal uric acid excretion and hyperuricemia in a German Caucasian population. , 2006, Arthritis and rheumatism.

[35]  Richard J. Johnson,et al.  Uric acid, evolution and primitive cultures. , 2005, Seminars in nephrology.

[36]  Hyon K. Choi,et al.  AMERICAN COLLEGE OF PHYSICIANS; AMERICAN PHYSIOLOGICAL SOCIETY. PATHOGENESIS OF GOUT , 2005 .

[37]  C. Carlson,et al.  Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. , 2004, American journal of human genetics.

[38]  A. Enomoto,et al.  Clinical and molecular analysis of patients with renal hypouricemia in Japan-influence of URAT1 gene on urinary urate excretion. , 2004, Journal of the American Society of Nephrology : JASN.

[39]  D. Muzny,et al.  Two independent mutational events in the loss of urate oxidase during hominoid evolution , 2004, Journal of Molecular Evolution.

[40]  D. Sica Renal handling of Organic Anions and Cations : Excretion of Uric Acid , 2000 .

[41]  Genome-wide Association Study Identifies Genes for Biomarkers of Cardiovascular Disease: Serum Urate and Dyslipidemia , 2022 .