Review: Mechanisms Underlying Alternative Polyadenylation in Plants-Looking in the Right Places.

[1]  Q. Li,et al.  Divergence in the Regulation of the Salt Tolerant Response Between Arabidopsis thaliana and Its Halophytic Relative Eutrema salsugineum by mRNA Alternative Polyadenylation , 2022, Frontiers in Plant Science.

[2]  Yongsheng Shi,et al.  Human pre-mRNA 3′ end processing: reconstituting is believing , 2022, Genes & development.

[3]  Hong Zhang,et al.  Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing , 2021, Genome biology.

[4]  Congting Ye,et al.  Intragenic heterochromatin‐mediated alternative polyadenylation modulates miRNA and pollen development in rice , 2021, The New phytologist.

[5]  Congting Ye,et al.  Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis , 2021, RNA biology.

[6]  Alexandra Moreira,et al.  On the function and relevance of alternative 3′‐UTRs in gene expression regulation , 2021, Wiley interdisciplinary reviews. RNA.

[7]  A. Hunt.  CPSF30-L - a direct connection between mRNA polyadenylation and m6A RNA modification in plants. , 2021, Molecular plant.

[8]  Jing Sun,et al.  CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis. , 2021, Molecular plant.

[9]  Q. Lu,et al.  Arabidopsis N6-methyladenosine reader CPSF30-L recognizes FUE signal to control polyadenylation site choice in liquid-like nuclear body. , 2021, Molecular plant.

[10]  Jian‐Kang Zhu,et al.  Genome-wide distribution and functions of the AAE complex in epigenetic regulation in Arabidopsis. , 2021, Journal of integrative plant biology.

[11]  C. Yao,et al.  U1 snRNP telescripting: molecular mechanisms and beyond , 2021, RNA biology.

[12]  Matthew T. Parker,et al.  Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA , 2020, bioRxiv.

[13]  K. L. Le Roch,et al.  The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression , 2020, PLoS genetics.

[14]  A. Reddy,et al.  Wide-ranging transcriptome remodeling mediated by alternative polyadenylation in response to abiotic stresses in sorghum. , 2020, The Plant journal : for cell and molecular biology.

[15]  Matthew T. Parker,et al.  Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification , 2020, eLife.

[16]  L. Passmore,et al.  Mechanistic insights into mRNA 3′-end processing , 2019, Current opinion in structural biology.

[17]  T. Walz,et al.  Structural Insights into the Human Pre-mRNA 3'-End Processing Machinery. , 2019, Molecular cell.

[18]  A. Hunt.  mRNA 3′ end formation in plants: Novel connections to growth, development and environmental responses , 2019, Wiley interdisciplinary reviews. RNA.

[19]  Jun Zhu,et al.  Activation and inhibition of nonsense-mediated mRNA decay controls the abundance of alternative polyadenylation products , 2019, bioRxiv.

[20]  S. Brady,et al.  The polyadenylation factor FIP1 is important for plant development and root responses to abiotic stresses. , 2019, The Plant journal : for cell and molecular biology.

[21]  Q. Li,et al.  Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation , 2019, Plant Cell.

[22]  D. Staiger,et al.  Marking RNA: m6A writers, readers, and functions in Arabidopsis , 2019, Journal of molecular cell biology.

[23]  P. Willems,et al.  The Plant PTM Viewer, a central resource for exploring plant protein modifications. , 2019, The Plant journal : for cell and molecular biology.

[24]  Congting Ye,et al.  Root Hair Single Cell Type Specific Profiles of Gene Expression and Alternative Polyadenylation Under Cadmium Stress , 2019, Front. Plant Sci..

[25]  G. Degliesposti,et al.  Activation of the Endonuclease that Defines mRNA 3′ Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex , 2019, Molecular cell.

[26]  N. Proudfoot,et al.  Transcriptional Control by Premature Termination: A Forgotten Mechanism , 2019, Trends in genetics : TIG.

[27]  J. Parker,et al.  Antagonistic Actions of FPA and IBM2 Regulate Transcript Processing from Genes Containing Heterochromatin1 , 2019, Plant Physiology.

[28]  Sheng Zhu,et al.  Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica , 2019, The Plant journal : for cell and molecular biology.

[29]  K. L. Le Roch,et al.  The Arabidopsis RRM domain protein EDM3 mediates race‐specific disease resistance by controlling H3K9me2‐dependent alternative polyadenylation of RPP7 immune receptor transcripts , 2018, The Plant journal : for cell and molecular biology.

[30]  K. Berendzen,et al.  Impact of Alternatively Polyadenylated Isoforms of ETHYLENE RESPONSE FACTOR4 with Activator and Repressor Function on Senescence in Arabidopsis thaliana L. , 2019, Genes.

[31]  Yunde Zhao,et al.  Modulation of Auxin Signaling and Development by Polyadenylation Machinery1[OPEN] , 2018, Plant Physiology.

[32]  T. Eulgem,et al.  Transcript-level expression control of plant NLR genes. , 2018, Molecular plant pathology.

[33]  Congting Ye,et al.  Alternative polyadenylation is involved in auxin‐based plant growth and development , 2018, The Plant journal : for cell and molecular biology.

[34]  Rongchen Wang,et al.  The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. , 2017, The New phytologist.

[35]  Lori A. Passmore,et al.  Architecture of eukaryotic mRNA 3′-end processing machinery , 2017, Science.

[36]  Xiaohui Wu,et al.  Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination , 2017, The Plant journal : for cell and molecular biology.

[37]  J. Bailey-Serres,et al.  Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia[OPEN] , 2017, Plant Cell.

[38]  Haixi Sun,et al.  Dehydration stress extends mRNA 3′ untranslated regions with noncoding RNA functions in Arabidopsis , 2017, Genome research.

[39]  Xiaofeng Cao,et al.  Roles of pre-mRNA splicing and polyadenylation in plant development. , 2017, Current opinion in plant biology.

[40]  B. Tian,et al.  Alternative polyadenylation of mRNA precursors , 2016, Nature Reviews Molecular Cell Biology.

[41]  M. Lenhard,et al.  Antagonistic control of flowering time by functionally specialized poly(A) polymerases in Arabidopsis thaliana. , 2016, The Plant journal : for cell and molecular biology.

[42]  Guoli Ji,et al.  Genome-wide dynamics of alternative polyadenylation in rice , 2016, Genome research.

[43]  M. Lenhard,et al.  Genome-Wide Analysis of PAPS1-Dependent Polyadenylation Identifies Novel Roles for Functionally Specialized Poly(A) Polymerases in Arabidopsis thaliana , 2015, PLoS genetics.

[44]  Q. Li,et al.  Integration of Developmental and Environmental Signals via a Polyadenylation Factor in Arabidopsis , 2014, PloS one.

[45]  C. Bergounioux,et al.  The Polyadenylation Factor Subunit CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR30: A Key Factor of Programmed Cell Death and a Regulator of Immunity in Arabidopsis1[W] , 2014, Plant Physiology.

[46]  G. Barton,et al.  The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation , 2013, Scientific Reports.

[47]  G. Barton,et al.  Transcription Termination and Chimeric RNA Formation Controlled by Arabidopsis thaliana FPA , 2013, PLoS genetics.

[48]  T. Eulgem,et al.  An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication , 2013, Proceedings of the National Academy of Sciences.

[49]  Q. Li,et al.  Plant polyadenylation factors: conservation and variety in the polyadenylation complex in plants , 2012, BMC Genomics.

[50]  Guoli Ji,et al.  Genome-Wide Control of Polyadenylation Site Choice by CPSF30 in Arabidopsis[C][W][OA] , 2012, Plant Cell.

[51]  Guoli Ji,et al.  Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation , 2011, Proceedings of the National Academy of Sciences.

[52]  D. Weigel,et al.  RNA 3′ processing functions of Arabidopsis FCA and FPA limit intergenic transcription , 2011, Proceedings of the National Academy of Sciences.

[53]  Denghui Xing,et al.  Alternative polyadenylation and gene expression regulation in plants , 2011, Wiley interdisciplinary reviews. RNA.

[54]  K. Ryan,et al.  Finishing touches: post-translational modification of protein factors involved in mammalian pre-mRNA 3' end formation. , 2008, The international journal of biochemistry & cell biology.

[55]  Hongwei Zhao,et al.  Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling , 2008, BMC Genomics.

[56]  B. Addepalli,et al.  A novel endonuclease activity associated with the Arabidopsis ortholog of the 30-kDa subunit of cleavage and polyadenylation specificity factor , 2007, Nucleic acids research.

[57]  Q. Li,et al.  Calmodulin Interacts with and Regulates the RNA-Binding Activity of an Arabidopsis Polyadenylation Factor Subunit1[OA] , 2006, Plant Physiology.

[58]  B. Addepalli,et al.  An Arabidopsis Fip1 Homolog Interacts with RNA and Provides Conceptual Links with a Number of Other Polyadenylation Factor Subunits* , 2006, Journal of Biological Chemistry.