Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study
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[1] K. Chou. Prediction of protein cellular attributes using pseudo‐amino acid composition , 2001, Proteins.
[2] K Nishikawa,et al. Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies. , 1994, Journal of molecular biology.
[3] Mona Singh,et al. Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps , 2005, ISMB.
[4] M. Gerstein,et al. Subcellular localization of the yeast proteome. , 2002, Genes & development.
[5] Chih-Jen Lin,et al. A Study on Threshold Selection for Multi-label Classification , 2007 .
[6] Xiaojin Zhu,et al. --1 CONTENTS , 2006 .
[7] Kuo-Chen Chou,et al. Predicting protein localization in budding Yeast , 2005, Bioinform..
[8] Gajendra P. S. Raghava,et al. ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST , 2004, Nucleic Acids Res..
[9] Mike Tyers,et al. BioGRID: a general repository for interaction datasets , 2005, Nucleic Acids Res..
[10] Mark A. Ragan,et al. BMC Systems Biology BioMed Central Research article Protein-protein interaction as a predictor of subcellular location , 2008 .
[11] Alessandro Vespignani,et al. Global protein function prediction from protein-protein interaction networks , 2003, Nature Biotechnology.
[12] B. Schwikowski,et al. A network of protein–protein interactions in yeast , 2000, Nature Biotechnology.
[13] Gaurav Kumar,et al. Network analysis of human protein location , 2010, BMC Bioinformatics.
[14] K. N. Chandrika,et al. Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets , 2006, Nature Genetics.
[15] S. Brunak,et al. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. , 2000, Journal of molecular biology.
[16] M. Moran,et al. Large-scale mapping of human protein–protein interactions by mass spectrometry , 2007, Molecular systems biology.
[17] Michelle S. Scott,et al. Predicting subcellular localization via protein motif co-occurrence. , 2004, Genome research.
[18] R. Sharan,et al. Network-based prediction of protein function , 2007, Molecular systems biology.
[19] James R. Knight,et al. A Protein Interaction Map of Drosophila melanogaster , 2003, Science.
[20] Trey Ideker,et al. Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species , 2008, Nucleic acids research.
[21] S. L. Wong,et al. Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.
[22] T. Takagi,et al. Assessment of prediction accuracy of protein function from protein–protein interaction data , 2001, Yeast.
[23] S. Kasif,et al. Whole-genome annotation by using evidence integration in functional-linkage networks. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[24] K. Nakai,et al. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. , 1999, Trends in biochemical sciences.
[25] Y. Hiraoka,et al. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe , 2006, Nature Biotechnology.
[26] C. Ball,et al. Saccharomyces Genome Database. , 2002, Methods in enzymology.