MapReduce for accurate error correction of next-generation sequencing data
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Peng Jiang | Jinyan Li | Limsoon Wong | Liang Zhao | Qingfeng Chen | Wencui Li | Jinyan Li | L. Wong | Qingfeng Chen | Liang Zhao | Wencui Li | Peng Jiang
[1] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[2] Jan Schröder,et al. BIOINFORMATICS ORIGINAL PAPER , 2022 .
[3] Srinivas Aluru,et al. A survey of error-correction methods for next-generation sequencing , 2013, Briefings Bioinform..
[4] Scott Shenker,et al. Spark: Cluster Computing with Working Sets , 2010, HotCloud.
[5] Leena Salmela,et al. Correction of sequencing errors in a mixed set of reads , 2010, Bioinform..
[6] P. Pevzner,et al. An Eulerian path approach to DNA fragment assembly , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[7] Jan Schröder,et al. Genome analysis SHREC : a short-read error correction method , 2009 .
[8] Dick de Ridder,et al. ACE: accurate correction of errors using K-mer tries , 2015, Bioinform..
[9] Andrew H. Chan,et al. ECHO: a reference-free short-read error correction algorithm. , 2011, Genome research.
[10] Lucian Ilie,et al. Correcting Illumina data , 2015, Briefings Bioinform..
[11] David R. Kelley,et al. Quake: quality-aware detection and correction of sequencing errors , 2010, Genome Biology.
[12] Alexey A. Gurevich,et al. QUAST: quality assessment tool for genome assemblies , 2013, Bioinform..
[13] Heng Li,et al. BFC: correcting Illumina sequencing errors , 2015, Bioinform..
[14] Panos Kalnis,et al. Karect: accurate correction of substitution, insertion and deletion errors for next-generation sequencing data , 2015, Bioinform..
[15] R. Durbin,et al. Efficient de novo assembly of large genomes using compressed data structures. , 2012, Genome research.
[16] J. Bonfield,et al. Finishing the euchromatic sequence of the human genome , 2004, Nature.
[17] Lucian Ilie,et al. RACER: Rapid and accurate correction of errors in reads , 2013, Bioinform..
[18] N. Lennon,et al. Characterizing and measuring bias in sequence data , 2013, Genome Biology.
[19] Lucian Ilie,et al. HiTEC: accurate error correction in high-throughput sequencing data , 2011, Bioinform..
[20] Xiaolong Wu,et al. BLESS: Bloom filter-based error correction solution for high-throughput sequencing reads , 2014, Bioinform..
[21] Huanming Yang,et al. De novo assembly of human genomes with massively parallel short read sequencing. , 2010, Genome research.
[22] T. Thomas,et al. GemSIM: general, error-model based simulator of next-generation sequencing data , 2012, BMC Genomics.
[23] Michael Hiller,et al. Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly , 2016, Briefings Bioinform..
[24] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[25] Pavel A Pevzner,et al. How to apply de Bruijn graphs to genome assembly. , 2011, Nature biotechnology.
[26] Thomas Hackl,et al. proovread: large-scale high-accuracy PacBio correction through iterative short read consensus , 2014, Bioinform..
[27] Mark J. Clement,et al. Effects of error-correction of heterozygous next-generation sequencing data , 2014, BMC Bioinformatics.
[28] Yongchao Liu,et al. Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data , 2013, Bioinform..
[29] M. Schatz,et al. Algorithms Gage: a Critical Evaluation of Genome Assemblies and Assembly Material Supplemental , 2008 .
[30] S. Koren,et al. Assembly algorithms for next-generation sequencing data. , 2010, Genomics.
[31] Paul Medvedev,et al. Error correction of high-throughput sequencing datasets with non-uniform coverage , 2011, Bioinform..
[32] Sanjay Ghemawat,et al. MapReduce: Simplified Data Processing on Large Clusters , 2004, OSDI.
[33] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[34] Sara Goodwin,et al. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome , 2015, bioRxiv.
[35] Ignacio Blanquer,et al. Objective review of de novo stand‐alone error correction methods for NGS data , 2016 .
[36] Yongchao Liu,et al. DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI , 2011, BMC Bioinformatics.
[37] E. Mardis. Next-generation sequencing platforms. , 2013, Annual review of analytical chemistry.
[38] Srinivas Aluru,et al. Reptile: representative tiling for short read error correction , 2010, Bioinform..