Soil organic carbon and texture retrieving and mapping using proximal, airborne and Sentinel-2 spectral imaging

Abstract Soil Organic Carbon (SOC) is a useful representative of soil fertility and an essential parameter in controlling the dynamics of various agrochemicals in soil. Soil texture is also used to calculate soil's ability to retain water for plant growth. SOC and soil texture are thus important parameters of agricultural soils and need to be regularly monitored. Optical satellite remote sensing offers the potential for frequent surveys over large areas. In addition, the recently-operated Sentinel-2 missions provide free imagery. This study compared the capabilities of Sentinel-2 for monitoring and mapping of SOC and soil texture (clay, silt and sand content) with those obtained from airborne hyperspectral (CASI/SASI sensors) and lab ASD FieldSpec spectroradiometer measurements at four agricultural sites in the Czech Republic. Combination of 10 extracted bands of the Sentinel-2 and 18 spectral indices, as independent variables, were used to train prediction models and then produce spatial distribution maps of the selected attributes. Results showed that the prediction accuracy based on lab spectroscopy, airborne and Sentinel-2 in the majority of the sites was adequate for SOC and fair for clay; however, Sentinel-2 imagery could not be used to detect and map variations in silt and sand. The SOC and clay maps derived from the airborne and spaceborne datasets showed similar trend, with both performing better where SOC levels were relatively high, though at the highest levels Sentinel-2 was able to create the SOC map more precisely than the airborne sensors. Taken across all SOC levels measured in the reference data, Sentinel-2 results were marginally lower than lab spectroscopy and airborne imagery, but this reduction in precision may be offset by the extensive geographical coverage and more frequent revisit characteristic of satellite observation. The increased temporal revisit and area are expected to be positive enhancements to the acquisition of high-quality information on variations in SOC and clay content of bare soils.

[1]  Stefano Pignatti,et al.  A comparison of sensor resolution and calibration strategies for soil texture estimation from hyperspectral remote sensing , 2013 .

[2]  P. Lagacherie,et al.  Estimation of soil clay and calcium carbonate using laboratory, field and airborne hyperspectral measurements , 2008 .

[3]  Jiaguo Qi,et al.  External factor consideration in vegetation index development , 1994 .

[4]  A. McBratney,et al.  Critical review of chemometric indicators commonly used for assessing the quality of the prediction of soil attributes by NIR spectroscopy , 2010 .

[5]  Daniel Schläpfer,et al.  Operational BRDF Effects Correction for Wide-Field-of-View Optical Scanners (BREFCOR) , 2015, IEEE Transactions on Geoscience and Remote Sensing.

[6]  H. Mark,et al.  Qualitative near-infrared reflectance analysis using Mahalanobis distances , 1985 .

[7]  M. M. Saberioon,et al.  Models for Estimating the Physical Properties of Paddy Soil Using Visible and Near Infrared Reflectance Spectroscopy , 2014 .

[8]  R. Casa,et al.  Evaluation of the potential of the current and forthcoming multispectral and hyperspectral imagers to estimate soil texture and organic carbon , 2016 .

[9]  C. Tucker Red and photographic infrared linear combinations for monitoring vegetation , 1979 .

[10]  R. V. Rossel,et al.  Soil organic carbon prediction by hyperspectral remote sensing and field vis-NIR spectroscopy: An Australian case study , 2008 .

[11]  Bas van Wesemael,et al.  Regional assessment of soil organic carbon changes under agriculture in Southern Belgium (1955-2005) , 2007 .

[12]  Thorsten Behrens,et al.  Sampling optimal calibration sets in soil infrared spectroscopy , 2014 .

[13]  R. V. Rossel,et al.  Visible, near infrared, mid infrared or combined diffuse reflectance spectroscopy for simultaneous assessment of various soil properties , 2006 .

[14]  J. Zyl,et al.  Introduction to the Physics and Techniques of Remote Sensing , 2006 .

[15]  M. Vohland,et al.  Comparing different multivariate calibration methods for the determination of soil organic carbon pools with visible to near infrared spectroscopy , 2011 .

[16]  Anne-Katrin Mahlein,et al.  Airborne hyperspectral imaging of spatial soil organic carbon heterogeneity at the field-scale , 2012 .

[17]  A. Huete A soil-adjusted vegetation index (SAVI) , 1988 .

[18]  Eyal Ben-Dor,et al.  Agricultural Soil Spectral Response and Properties Assessment: Effects of Measurement Protocol and Data Mining Technique , 2017, Remote. Sens..

[19]  K. Paustian,et al.  Impact of soil texture on the distribution of soil organic matter in physical and chemical fractions , 2006 .

[20]  Mohammadmehdi Saberioon,et al.  Estimation of Potentially Toxic Elements Contamination in Anthropogenic Soils on a Brown Coal Mining Dumpsite by Reflectance Spectroscopy: A Case Study , 2015, PloS one.

[21]  Harald van der Werff,et al.  Sentinel-2A MSI and Landsat 8 OLI Provide Data Continuity for Geological Remote Sensing , 2016, Remote. Sens..

[22]  Clement Atzberger,et al.  Data Service Platform for Sentinel-2 Surface Reflectance and Value-Added Products: System Use and Examples , 2016, Remote. Sens..

[23]  S. Buol Soil Genesis and Classification , 1980 .

[24]  Daniel Schläpfer,et al.  Operational Atmospheric Correction for Imaging Spectrometers Accounting for the Smile Effect , 2011, IEEE Transactions on Geoscience and Remote Sensing.

[25]  Daniel Zízala,et al.  Assessment of Soil Degradation by Erosion Based on Analysis of Soil Properties Using Aerial Hyperspectral Images and Ancillary Data, Czech Republic , 2017, Remote. Sens..

[26]  M. Elhag,et al.  Soil salinity mapping and hydrological drought indices assessment in arid environments based on remote sensing techniques , 2016 .

[27]  Budiman Minasny,et al.  Proximal Soil Sensing , 2010 .

[28]  Harald van der Werff,et al.  Potential of ESA's Sentinel-2 for geological applications , 2014 .

[29]  Naoto Yokoya,et al.  Potential of Resolution-Enhanced Hyperspectral Data for Mineral Mapping Using Simulated EnMAP and Sentinel-2 Images , 2016, Remote. Sens..

[30]  Eyal Ben-Dor,et al.  Monitoring of selected soil contaminants using proximal and remote sensing techniques: Background, state-of-the-art and future perspectives , 2018 .

[31]  Clement Atzberger,et al.  First Experience with Sentinel-2 Data for Crop and Tree Species Classifications in Central Europe , 2016, Remote. Sens..

[32]  Shiliang Liu,et al.  Prediction of soil organic matter variability associated with different land use types in mountainous landscape in southwestern Yunnan province, China , 2015 .

[33]  Guoqing Zhou,et al.  Estimation of Soil Moisture from Optical and Thermal Remote Sensing: A Review , 2016, Sensors.

[34]  D. Weindorf,et al.  Scale Effect of Climate and Soil Texture on Soil Organic Carbon in the Uplands of Northeast China , 2010 .

[35]  Sabine Chabrillat,et al.  Prediction of Common Surface Soil Properties Based on Vis-NIR Airborne and Simulated EnMAP Imaging Spectroscopy Data: Prediction Accuracy and Influence of Spatial Resolution , 2016, Remote. Sens..

[36]  L. Hoffmann,et al.  Measuring soil organic carbon in croplands at regional scale using airborne imaging spectroscopy , 2010 .

[37]  H. Ramon,et al.  Towards development of on-line soil moisture content sensor using a fibre-type NIR spectrophotometer , 2005 .

[38]  A. Huete,et al.  Overview of the radiometric and biophysical performance of the MODIS vegetation indices , 2002 .

[39]  Mohammadmehdi Saberioon,et al.  A Memory-Based Learning Approach as Compared to Other Data Mining Algorithms for the Prediction of Soil Texture Using Diffuse Reflectance Spectra , 2016, Remote. Sens..

[40]  C. Jordan Derivation of leaf-area index from quality of light on the forest floor , 1969 .

[41]  Abdul Mounem Mouazen,et al.  Influence of the number of samples on prediction error of visible and near infrared spectroscopy of selected soil properties at the farm scale , 2011 .

[42]  Bruno Mary,et al.  Modeling consequences of straw residues export on soil organic carbon , 2008 .

[43]  F. Baret,et al.  Potentials and limits of vegetation indices for LAI and APAR assessment , 1991 .

[44]  Zhou Shi,et al.  Improved estimates of organic carbon using proximally sensed vis–NIR spectra corrected by piecewise direct standardization , 2015 .

[45]  Bo Stenberg,et al.  Improving the prediction performance of a large tropical vis‐NIR spectroscopic soil library from Brazil by clustering into smaller subsets or use of data mining calibration techniques , 2014 .

[46]  Budiman Minasny,et al.  A conditioned Latin hypercube method for sampling in the presence of ancillary information , 2006, Comput. Geosci..

[47]  P. Lagacherie,et al.  Regional predictions of eight common soil properties and their spatial structures from hyperspectral Vis–NIR data , 2012 .

[48]  K. McLauchlan Effects of soil texture on soil carbon and nitrogen dynamics after cessation of agriculture , 2006 .

[49]  Alberto Alonso Arroyo,et al.  On the Synergy of Airborne GNSS-R and Landsat 8 for Soil Moisture Estimation , 2015, Remote. Sens..

[50]  Huili Gong,et al.  Object-Based Urban Tree Species Classification Using Bi-Temporal WorldView-2 and WorldView-3 Images , 2015, Remote. Sens..

[51]  J. Deckers,et al.  World Reference Base for Soil Resources , 1998 .

[52]  A. Gholizadeh,et al.  Visible and near infrared reflectance spectroscopy to determine chemical properties of paddy soils , 2013 .

[53]  Shiv O. Prasher,et al.  Development of field-scale soil organic matter content estimation models in eastern Canada using airborne hyperspectral imagery , 2005 .

[54]  Junjie Wang,et al.  Improving the prediction of arsenic contents in agricultural soils by combining the reflectance spectroscopy of soils and rice plants , 2016, Int. J. Appl. Earth Obs. Geoinformation.

[55]  P. Levelt,et al.  ESA's sentinel missions in support of Earth system science , 2012 .

[56]  John M. Briggs,et al.  Transformed Vegetation Index for Measuring Spatial Variation in Drought Impacted Biomass on Konza Prairie, Kansas , 1992 .

[57]  José Madeira Netto,et al.  Caractéristiques spectrales des surfaces sableuses de la région côtière Nord-Ouest de l'Egypte : application aux données satellitaires SPOT , 1991 .

[58]  Bernhard E. Boser,et al.  A training algorithm for optimal margin classifiers , 1992, COLT '92.

[59]  A. Huete,et al.  A Modified Soil Adjusted Vegetation Index , 1994 .

[60]  Lin Li,et al.  Estimation of agricultural soil properties with imaging and laboratory spectroscopy , 2013 .

[61]  J. Hill,et al.  Using Imaging Spectroscopy to study soil properties , 2009 .

[62]  Nicholas C. Coops,et al.  Virtual constellations for global terrestrial monitoring , 2015 .

[63]  J. Maynard,et al.  Hyper-temporal remote sensing for digital soil mapping: Characterizing soil-vegetation response to climatic variability , 2017 .

[64]  J. Qi,et al.  Remote Sensing for Grassland Management in the Arid Southwest , 2006 .

[65]  Hermann Kaufmann,et al.  Spaceborne Mine Waste Mineralogy Monitoring in South Africa, Applications for Modern Push-Broom Missions: Hyperion/OLI and EnMAP/Sentinel-2 , 2014, Remote. Sens..

[66]  J. R. Jensen Remote Sensing of the Environment: An Earth Resource Perspective , 2000 .

[67]  Huanjun Liu,et al.  Comparison of different satellite bands and vegetation indices for estimation of soil organic matter based on simulated spectral configuration , 2017 .

[68]  Ghislain Vieilledent,et al.  Estimating temporal changes in soil carbon stocks at ecoregional scale in Madagascar using remote-sensing , 2017, Int. J. Appl. Earth Obs. Geoinformation.

[69]  Lênio Soares Galvão,et al.  Hyperspectral Remote Sensing for Detecting Soil Salinization Using ProSpecTIR-VS Aerial Imagery and Sensor Simulation , 2017, Remote. Sens..

[70]  U. Schmidhalter,et al.  High resolution topsoil mapping using hyperspectral image and field data in multivariate regression modeling procedures , 2006 .

[71]  E. Ben-Dor Quantitative remote sensing of soil properties , 2002 .

[72]  B. Stenberg,et al.  Near‐infrared spectroscopy for within‐field soil characterization: small local calibrations compared with national libraries spiked with local samples , 2010 .

[73]  Juanjo Peón,et al.  Evaluation of the spectral characteristics of five hyperspectral and multispectral sensors for soil organic carbon estimation in burned areas , 2017 .

[74]  C. Burras,et al.  Organic Carbon, Texture, and Quantitative Color Measurement Relationships for Cultivated Soils in North Central Iowa , 2003 .

[75]  C. Hurburgh,et al.  Near-Infrared Reflectance Spectroscopy–Principal Components Regression Analyses of Soil Properties , 2001 .

[76]  T. Behrens,et al.  A method to generate soilscapes from soil maps , 2010 .

[77]  Jean-Michel Roger,et al.  Predictive ability of soil properties to spectral degradation from laboratory Vis-NIR spectroscopy data , 2017 .

[78]  Michael E. Schaepman,et al.  Sentinels for science: potential of Sentinel-1, -2, and -3 missions for scientific observations of ocean, cryosphere, and land , 2012 .

[79]  Cindy Ong,et al.  Reflectance measurements of soils in the laboratory: Standards and protocols , 2015 .

[80]  T. Anderson,et al.  Changes in composition of soil polysaccharides and aggregate stability after carbon amendments to different textured soils , 1994 .

[81]  A. Gitelson,et al.  Use of a green channel in remote sensing of global vegetation from EOS- MODIS , 1996 .

[82]  Matthias Drusch,et al.  Sentinel-2: ESA's Optical High-Resolution Mission for GMES Operational Services , 2012 .

[83]  Branislav Bajat,et al.  Geological Units Classification of Multispectral Images by Using Support Vector Machines , 2009, 2009 International Conference on Intelligent Networking and Collaborative Systems.

[84]  J. A. Schell,et al.  Monitoring vegetation systems in the great plains with ERTS , 1973 .

[85]  Adrian Chappell,et al.  On the soil information content of visible–near infrared reflectance spectra , 2011 .

[86]  Mohammadmehdi Saberioon,et al.  Comparing different data preprocessing methods for monitoring soil heavy metals based on soil spectral features. , 2016 .

[87]  Zongming Wang,et al.  Remote estimation of soil organic matter content in the Sanjiang Plain, Northest China: The optimal band algorithm versus the GRA-ANN model , 2016 .

[88]  D. Qiu,et al.  Estimation of As and Cu Contamination in Agricultural Soils Around a Mining Area by Reflectance Spectroscopy: A Case Study , 2009 .

[89]  D. Cozzolino,et al.  Potential of near-infrared reflectance spectroscopy and chemometrics to predict soil organic carbon fractions , 2006 .

[90]  Philippe Lagacherie,et al.  Sensitivity of clay content prediction to spectral configuration of VNIR/SWIR imaging data, from multispectral to hyperspectral scenarios , 2018 .

[91]  E. Ben-Dor,et al.  Laboratory, field and airborne spectroscopy for monitoring organic carbon content in agricultural soils , 2007 .

[92]  R. Escadafal,et al.  Remote sensing of arid soil surface color with Landsat thematic mapper , 1989 .

[93]  O. Mutanga,et al.  Examining the strength of the newly-launched Sentinel 2 MSI sensor in detecting and discriminating subtle differences between C3 and C4 grass species , 2017 .

[94]  B. Wesemael,et al.  Prediction of soil organic carbon for different levels of soil moisture using Vis-NIR spectroscopy , 2013 .

[95]  Sabine Chabrillat,et al.  Soil Organic Carbon Estimation in Croplands by Hyperspectral Remote APEX Data Using the LUCAS Topsoil Database , 2018, Remote. Sens..

[96]  Godwin A. Ayoko,et al.  Diffuse reflectance spectroscopy for monitoring potentially toxic elements in the agricultural soils of Changjiang River Delta, China , 2012 .

[97]  Eyal Ben-Dor,et al.  Performance of Three Identical Spectrometers in Retrieving Soil Reflectance under Laboratory Conditions , 2011 .

[98]  A. Karnieli,et al.  Mapping of several soil properties using DAIS-7915 hyperspectral scanner data - a case study over clayey soils in Israel , 2002 .

[99]  J. Clevers The Derivation of a Simplified Reflectance Model for the Estimation of Leaf Area Index , 1988 .

[100]  Jian Li,et al.  Best practices for the reprojection and resampling of Sentinel-2 Multi Spectral Instrument Level 1C data , 2016 .

[101]  Marco Gianinetto,et al.  The development of Superspectral approaches for the improvement of land cover classification , 2004, IEEE Transactions on Geoscience and Remote Sensing.

[102]  Paolo Massimo Buscema,et al.  Mapping fractional landscape soils and vegetation components from Hyperion satellite imagery using an unsupervised machine-learning workflow , 2018, Int. J. Digit. Earth.

[103]  Thomas Gumbricht,et al.  Mapping of soil properties and land degradation risk in Africa using MODIS reflectance , 2016 .

[104]  J. Duckworth Mathematical Data Preprocessing , 2015 .

[105]  S. Wofsy,et al.  Modeling gross primary production of temperate deciduous broadleaf forest using satellite images and climate data , 2004 .

[106]  J. Hanuš,et al.  POTENTIAL OF AIRBORNE IMAGING SPECTROSCOPY AT CZECHGLOBE , 2016 .

[107]  John S. Shenk,et al.  Population Definition, Sample Selection, and Calibration Procedures for Near Infrared Reflectance Spectroscopy , 1991 .