Prediction of specific biomolecule adsorption on silica surfaces as a function of pH and particle size
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Vikas Varshney | Siddharth V. Patwardhan | Carole C. Perry | Hendrik Heinz | Rajiv Berry | V. Varshney | C. Perry | H. Heinz | Valeria Puddu | R. Berry | F. Emami | S. Patwardhan | Fateme S. Emami | Valeria Puddu | V. Puddu
[1] Alexander D. MacKerell,et al. Development of an empirical force field for silica. Application to the quartz-water interface. , 2006, The journal of physical chemistry. B.
[2] W. A. Brown,et al. Structure and stability of the (001) α-quartz surface , 2007 .
[3] Lucio Colombi Ciacchi,et al. Specific material recognition by small peptides mediated by the interfacial solvent structure. , 2012, Journal of the American Chemical Society.
[4] S. Lorenz,et al. Self-Assembly of Highly Phosphorylated Silaffins and Their Function in Biosilica Morphogenesis , 2002, Science.
[5] Carole C Perry,et al. Peptide adsorption on silica nanoparticles: evidence of hydrophobic interactions. , 2012, ACS nano.
[6] M. Hildebrand. Diatoms, biomineralization processes, and genomics. , 2008, Chemical reviews.
[7] Joachim Sauer,et al. Molecular mechanics potential for silica and zeolite catalysts based on ab initio calculations. 1. Dense and microporous silica , 1994 .
[8] Simple and accurate computations of solvatochromic shifts in pi --> pi* transitions of aromatic chromophores. , 2001, Journal of the American Chemical Society.
[9] Jincheng Du,et al. Molecular Dynamics Simulation of the Structure and Hydroxylation of Silica Glass Surfaces , 2005 .
[10] Galen D. Stucky,et al. Biomimetic synthesis of ordered silica structures mediated by block copolypeptides , 2000, Nature.
[11] Ersin Emre Oren,et al. BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm436 Sequence analysis , 2022 .
[12] E. Arias,et al. Interaction of substituted poly(phenyleneethynylene)s with ligand-stabilized CdS nanoparticles , 2014 .
[13] S. Bromley,et al. A new interatomic potential for nanoscale silica , 2003 .
[14] H. Koerner,et al. Force Field for Mica-Type Silicates and Dynamics of Octadecylammonium Chains Grafted to Montmorillonite , 2005 .
[15] Siddharth V. Patwardhan,et al. On the role(s) of additives in bioinspired silicification. , 2005, Chemical communications.
[16] W. Stöber,et al. Controlled growth of monodisperse silica spheres in the micron size range , 1968 .
[17] Stephen H. Garofalini,et al. Molecular dynamics simulation of the frequency spectrum of amorphous silica , 1982 .
[18] G. Lombardo,et al. Molecular Modeling of Interactions between l-Lysine and a Hydroxylated Quartz Surface , 2004 .
[19] T. Bein,et al. Targeted drug delivery in cancer cells with red-light photoactivated mesoporous silica nanoparticles. , 2013, Nano letters.
[20] C. R. A. Catlow,et al. Interatomic potentials for SiO2 , 1984 .
[21] P. Ugliengo,et al. Neutral vs zwitterionic glycine forms at the water/silica interface: structure, energies, and vibrational features from B3LYP periodic simulations. , 2008, Langmuir : the ACS journal of surfaces and colloids.
[22] D. Cole,et al. Hydration structure on crystalline silica substrates. , 2009, Langmuir : the ACS journal of surfaces and colloids.
[23] M. Menziani,et al. FFSiOH: a New Force Field for Silica Polymorphs and Their Hydroxylated Surfaces Based on Periodic B3LYP Calculations , 2008 .
[24] D. Pisignano,et al. Silicateins--a novel paradigm in bioinorganic chemistry: enzymatic synthesis of inorganic polymeric silica. , 2013, Chemistry.
[25] Jacob N. Israelachvili,et al. Interactions of silica surfaces , 1994 .
[26] N. Kröger,et al. Polycationic peptides from diatom biosilica that direct silica nanosphere formation. , 1999, Science.
[27] Albert Rimola,et al. Silica surface features and their role in the adsorption of biomolecules: computational modeling and experiments. , 2013, Chemical reviews.
[28] Brian G. Trewyn,et al. Mesoporous Silica Nanoparticles for Drug Delivery and Biosensing Applications , 2007 .
[29] S. J. Singer,et al. The Dissociated Amorphous Silica Surface: Model Development and Evaluation. , 2010, Journal of chemical theory and computation.
[30] Hendrik Heinz,et al. Computational screening of biomolecular adsorption and self‐assembly on nanoscale surfaces , 2009, J. Comput. Chem..
[31] G. Bolt. Determination of the Charge Density of Silica Sols , 1957 .
[32] H. Heinz,et al. Clay minerals for nanocomposites and biotechnology: surface modification, dynamics and responses to stimuli , 2012, Clay Minerals.
[33] Fernando Galembeck,et al. Size Dependence of Stöber Silica Nanoparticle Microchemistry , 2003 .
[34] Barry L. Farmer,et al. Adsorption mechanism of single amino acid and surfactant molecules to Au {111} surfaces in aqueous solution: design rules for metal-binding molecules , 2011 .
[35] Yu Huang,et al. Tailoring molecular specificity toward a crystal facet: a lesson from biorecognition toward Pt{111}. , 2013, Nano letters.
[36] A. Foissy,et al. Study of Ca2+-induced silica coagulation by small angle scattering , 1990 .
[37] R. K. Mishra,et al. Thermodynamically consistent force fields for the assembly of inorganic, organic, and biological nanostructures: the INTERFACE force field. , 2013, Langmuir : the ACS journal of surfaces and colloids.
[38] L. Hench,et al. Molecular orbital model of the diatom frustule: Potential for biomimetics , 1996 .
[39] Jason L. Townson,et al. Cellular complexity captured in durable silica biocomposites , 2012, Proceedings of the National Academy of Sciences of the United States of America.
[40] S. Garofalini,et al. Bridging oxygen as a site for proton adsorption on the vitreous silica surface. , 2009, The Journal of chemical physics.
[41] R. Vaia,et al. Self-Assembly of Alkylammonium Chains on Montmorillonite: Effect of Chain Length, Head Group Structure, and Cation Exchange Capacity , 2007 .
[42] P. Tréguer,et al. Growth physiology and fate of diatoms in the ocean: a review , 2005 .
[43] Ruth Pachter,et al. Nature of molecular interactions of peptides with gold, palladium, and Pd-Au bimetal surfaces in aqueous solution. , 2009, Journal of the American Chemical Society.
[44] R. Iler. The Chemistry of Silica: Solubility, Polymerization, Colloid and Surface Properties and Biochemistry of Silica , 1979 .
[45] K. Schulten,et al. Water-silica force field for simulating nanodevices. , 2006, The journal of physical chemistry. B.
[46] Kramer,et al. Force fields for silicas and aluminophosphates based on ab initio calculations. , 1990, Physical review letters.
[47] H. Butt,et al. Tuning the mechanical properties of silica microcapsules. , 2010, Physical chemistry chemical physics : PCCP.
[48] H. Heinz,et al. Facet Recognition and Molecular Ordering of Ionic Liquids on Metal Surfaces , 2013 .
[49] R. Vaia,et al. Photoisomerization of Azobenzene Grafted to Layered Silicates: Simulation and Experimental Challenges , 2008 .
[50] Peter T. Cummings,et al. Simulations of the Quartz(1011)/Water Interface: A Comparison of Classical Force Fields, Ab Initio Molecular Dynamics, and X-ray Reflectivity Experiments , 2011 .
[51] Robert J. Flatt,et al. Force Field for Tricalcium Silicate and Insight into Nanoscale Properties: Cleavage, Initial Hydration, and Adsorption of Organic Molecules , 2013 .
[52] M. Sumper,et al. Learning from Diatoms: Nature's Tools for the Production of Nanostructured Silica , 2006 .
[53] M. Sodupe,et al. Realistic Models of Hydroxylated Amorphous Silica Surfaces and MCM‐41 Mesoporous Material Simulated by Large‐scale Periodic B3LYP Calculations , 2008 .
[54] E. Wang,et al. Water adsorption on hydroxylated silica surfaces studied using the density functional theory , 2005 .
[55] C. Perry,et al. Interactions at the silica-peptide interface: the influence of particle size and surface functionality. , 2014, Langmuir : the ACS journal of surfaces and colloids.
[56] Ersin Emre Oren,et al. Probing the molecular mechanisms of quartz-binding peptides. , 2010, Langmuir : the ACS journal of surfaces and colloids.
[57] H. Heinz,et al. Cleavage Energy of Alkylammonium-Modified Montmorillonite and Relation to Exfoliation in Nanocomposites: Influence of Cation Density, Head Group Structure, and Chain Length , 2010 .
[58] Rajesh R Naik,et al. Chemistry of aqueous silica nanoparticle surfaces and the mechanism of selective peptide adsorption. , 2012, Journal of the American Chemical Society.
[59] T. Tadros,et al. Adsorption of potential-determining ions at the silica-aqueous electrolyte interface and the role of some cations , 1968 .
[60] R. K. Mishra,et al. A force field for tricalcium aluminate to characterize surface properties, initial hydration, and organically modified interfaces in atomic resolution. , 2014, Dalton transactions.
[61] C. Perry,et al. From biominerals to biomaterials: the role of biomolecule-mineral interactions. , 2009, Biochemical Society transactions.
[62] Mehmet Sarikaya,et al. Influence of the shape of nanostructured metal surfaces on adsorption of single peptide molecules in aqueous solution. , 2012, Small.
[63] U. Suter,et al. Atomic Charges for Classical Simulations of Polar Systems , 2004 .
[64] Marc R. Knecht,et al. Exploiting localized surface binding effects to enhance the catalytic reactivity of peptide-capped nanoparticles. , 2013, Journal of the American Chemical Society.
[65] Sonnefeld. Determination of Surface Charge Density Constants for Spherical Silica Particles Using a Linear Transformation , 1996, Journal of colloid and interface science.
[66] S. J. Singer,et al. Model for the water-amorphous silica interface: the undissociated surface. , 2007, The journal of physical chemistry. B.
[67] H. Heinz. The role of chemistry and pH of solid surfaces for specific adsorption of biomolecules in solution—accurate computational models and experiment , 2014, Journal of physics. Condensed matter : an Institute of Physics journal.
[68] Tiffany R. Walsh,et al. Ab initio derived force‐field parameters for molecular dynamics simulations of deprotonated amorphous‐SiO2/water interfaces , 2012 .
[69] M. Fröba,et al. Silica-based mesoporous organic-inorganic hybrid materials. , 2006, Angewandte Chemie.
[70] Tiffany R Walsh,et al. Efficient conformational sampling of peptides adsorbed onto inorganic surfaces: insights from a quartz binding peptide. , 2013, Physical chemistry chemical physics : PCCP.
[71] Siddharth V. Patwardhan,et al. Biomimetic and bioinspired silica: recent developments and applications. , 2011, Chemical communications.
[72] Vikas Varshney,et al. Force Field and a Surface Model Database for Silica to Simulate Interfacial Properties in Atomic Resolution , 2014 .
[73] Carlo Cavazzoni,et al. Hydroxyl-rich beta-sheet adhesion to the gold surface in water by first-principle simulations. , 2010, Journal of the American Chemical Society.