Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics
暂无分享,去创建一个
Peng Zhang | Yuefan Deng | Danny Bluestein | Marvin J Slepian | Na Zhang | M. Slepian | D. Bluestein | N. Zhang | Peng Zhang | Chao Gao | Yuefan Deng | Chao Gao
[1] William Gropp,et al. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis , 2013, HiPC 2013.
[2] J R O'Brien,et al. An independent haemostatic mechanism: shear induced platelet aggregation. , 1990, Advances in experimental medicine and biology.
[3] George E. Karniadakis,et al. Velocity limit in DPD simulations of wall-bounded flows , 2008, J. Comput. Phys..
[4] H Reul,et al. Assessment of hemolysis related quantities in a microaxial blood pump by computational fluid dynamics. , 2001, Artificial organs.
[5] Joseph Lau,et al. The Vulnerable Atherosclerotic Plaque: Scope of the Literature , 2010, Annals of Internal Medicine.
[6] Nikolaus A. Adams,et al. 11 PFLOP/s simulations of cloud cavitation collapse , 2013, 2013 SC - International Conference for High Performance Computing, Networking, Storage and Analysis (SC).
[7] S. Montgomery-Smith,et al. Numerical Evaluation of Single Fiber Motion for Short-Fiber-Reinforced Composite Materials Processing , 2011 .
[8] G. Karniadakis,et al. Blood Flow and Cell‐Free Layer in Microvessels , 2010, Microcirculation.
[9] J. P. Grossman,et al. Biomolecular simulation: a computational microscope for molecular biology. , 2012, Annual review of biophysics.
[10] J. W. Humberston. Classical mechanics , 1980, Nature.
[11] Shmuel Einav,et al. Device Thrombogenicity Emulator (DTE)--design optimization methodology for cardiovascular devices: a study in two bileaflet MHV designs. , 2010, Journal of biomechanics.
[12] George E. Karniadakis,et al. A family of time-staggered schemes for integrating hybrid DPD models for polymers: Algorithms and applications , 2006, J. Comput. Phys..
[13] Christopher R. Sweet,et al. Modelling platelet–blood flow interaction using the subcellular element Langevin method , 2011, Journal of The Royal Society Interface.
[14] P. Perrotta,et al. Platelet activation in a circulating flow loop: combined effects of shear stress and exposure time , 2003, Platelets.
[15] Aaron L. Fogelson,et al. Computational Methods for Continuum Models of Platelet Aggregation , 1999 .
[16] G. Karniadakis,et al. A new method to impose no-slip boundary conditions in dissipative particle dynamics , 2005 .
[17] Y Lanir,et al. Effects of contact-induced membrane stiffening on platelet adhesion , 2004, Biomechanics and modeling in mechanobiology.
[18] D. Hammer,et al. A theoretical analysis for the effect of focal contact formation on cell-substrate attachment strength. , 1993, Biophysical journal.
[19] Danny Bluestein,et al. Flow-Induced Platelet Activation in Bileaflet and Monoleaflet Mechanical Heart Valves , 2004, Annals of Biomedical Engineering.
[20] G. Karniadakis,et al. Computational Biorheology of Human Blood Flow in Health and Disease , 2013, Annals of Biomedical Engineering.
[21] J. Hartwig,et al. The cytoskeleton of the resting human blood platelet: structure of the membrane skeleton and its attachment to actin filaments , 1991, The Journal of cell biology.
[22] H. C. Corben,et al. Classical Mechanics (2nd ed.) , 1961 .
[23] Wei Yin,et al. Flow induced platelet activation in mechanical heart valves - in vitro studies , 2002, Proceedings of the Second Joint 24th Annual Conference and the Annual Fall Meeting of the Biomedical Engineering Society] [Engineering in Medicine and Biology.
[24] Yuefan Deng,et al. Particle-Based Methods for Multiscale Modeling of Blood Flow in the Circulation and in Devices: Challenges and Future Directions , 2010, Annals of Biomedical Engineering.
[25] Phillip L Geissler,et al. Large-scale simulations of fluctuating biological membranes. , 2009, The Journal of chemical physics.
[26] Michael R. King,et al. Three-dimensional simulations of a platelet-shaped spheroid near a wall in shear flow , 2005 .
[27] Wilfred F van Gunsteren,et al. On developing coarse-grained models for biomolecular simulation: a review. , 2012, Physical chemistry chemical physics : PCCP.
[28] C. G. Hoover,et al. Microscopic and macroscopic stress with gravitational and rotational forces. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.
[29] W. Briels,et al. Systematic coarse-graining of the dynamics of entangled polymer melts: the road from chemistry to rheology , 2011, Journal of physics. Condensed matter : an Institute of Physics journal.
[30] Piet D. Iedema,et al. Modelling multi-viscosity systems with dissipative particle dynamics , 2006, J. Comput. Phys..
[31] George E. Karniadakis,et al. Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics , 2011, J. Comput. Phys..
[32] Danny Bluestein,et al. Flow-induced platelet activation and damage accumulation in a mechanical heart valve: numerical studies. , 2007, Artificial organs.
[33] Yuefan Deng,et al. Viscous flow simulation in a stenosis model using discrete particle dynamics: a comparison between DPD and CFD , 2012, Biomechanics and modeling in mechanobiology.
[34] Subra Suresh,et al. Multiscale Modeling of Red Blood Cell Mechanics and Blood Flow in Malaria , 2011, PLoS Comput. Biol..
[35] T. Diacovo,et al. Mechanics of transient platelet adhesion to von Willebrand factor under flow. , 2005, Biophysical journal.
[36] P. Español,et al. Statistical Mechanics of Dissipative Particle Dynamics. , 1995 .
[37] N. Bessonov,et al. Modelling of thrombus growth and growth stop in flow by the method of dissipative particle dynamics , 2012 .
[38] Danny Bluestein,et al. High-Shear Stress Sensitizes Platelets to Subsequent Low-Shear Conditions , 2010, Annals of Biomedical Engineering.
[39] N. Filipovic,et al. Modelling thrombosis using dissipative particle dynamics method , 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[40] Piet D. Iedema,et al. No-Slip Boundary Condition In Dissipative Particle Dynamics , 2000 .
[41] George E. Karniadakis,et al. Triple-decker: Interfacing atomistic-mesoscopic-continuum flow regimes , 2009, J. Comput. Phys..
[42] S. Einav,et al. Microcalcifications Increase Coronary Vulnerable Plaque Rupture Potential: A Patient-Based Micro-CT Fluid–Structure Interaction Study , 2012, Annals of Biomedical Engineering.
[43] M. Xenos,et al. Erratum to: Evaluation of Shear-Induced Platelet Activation Models Under Constant and Dynamic Shear Stress Loading Conditions Relevant to Devices , 2013, Annals of Biomedical Engineering.
[44] M M Frojmovic,et al. Human platelet size, shape, and related functions in health and disease. , 1982, Physiological reviews.
[45] J. Moake,et al. Platelets and shear stress. , 1996 .
[46] Junichiro Makino,et al. 4.45 Pflops astrophysical N-body simulation on K computer -- The gravitational trillion-body problem , 2012, 2012 International Conference for High Performance Computing, Networking, Storage and Analysis.
[47] Na Zhang,et al. Parameterizing the Morse potential for coarse-grained modeling of blood plasma , 2014, J. Comput. Phys..
[48] S. Einav,et al. Influence of microcalcifications on vulnerable plaque mechanics using FSI modeling. , 2008, Journal of biomechanics.
[49] G. B. Jeffery. The motion of ellipsoidal particles immersed in a viscous fluid , 1922 .
[50] Pep Español,et al. Boundary Models in DPD , 1998 .
[51] M. King,et al. Platelet adhesive dynamics. Part I: characterization of platelet hydrodynamic collisions and wall effects. , 2008, Biophysical journal.
[52] C. Pozrikidis,et al. Flipping of an adherent blood platelet over a substrate , 2006, Journal of Fluid Mechanics.
[53] George Em Karniadakis,et al. Accurate coarse-grained modeling of red blood cells. , 2008, Physical review letters.
[54] Danny Bluestein,et al. Simulation of Platelets Suspension Flowing Through a Stenosis Model Using a Dissipative Particle Dynamics Approach , 2013, Annals of Biomedical Engineering.
[55] Li Zhang,et al. Analysis of Linpack and power efficiencies of the world's TOP500 supercomputers , 2013, Parallel Comput..
[56] Arun K. Subramaniyan,et al. Continuum interpretation of virial stress in molecular simulations , 2008 .
[57] Geoffrey Ingram Taylor,et al. The Motion of Ellipsoidal Particles in a Viscous Fluid , 1923 .
[58] Suresh G. Advani,et al. Investigation of fiber motion near solid boundaries in simple shear flow , 2001 .
[59] P. B. Warren,et al. DISSIPATIVE PARTICLE DYNAMICS : BRIDGING THE GAP BETWEEN ATOMISTIC AND MESOSCOPIC SIMULATION , 1997 .
[60] Shmuel Einav,et al. Design Optimization of a Mechanical Heart Valve for Reducing Valve Thrombogenicity—A Case Study with ATS Valve , 2010, ASAIO journal.
[61] N. Filipovic,et al. Interactions of blood cell constituents: experimental investigation and computational modeling by discrete particle dynamics algorithm. , 2008, Microvascular research.
[62] S. Edwards,et al. The computer study of transport processes under extreme conditions , 1972 .
[63] Jason H. Haga,et al. Quantification of the Passive Mechanical Properties of the Resting Platelet , 1998, Annals of Biomedical Engineering.
[64] H. P. Lee,et al. Using 3D fluid–structure interaction model to analyse the biomechanical properties of erythrocyte , 2008 .
[65] J. Marshall,et al. Micro-scale Dynamic Simulation of Erythrocyte–Platelet Interaction in Blood Flow , 2008, Annals of Biomedical Engineering.
[66] George Em Karniadakis,et al. A multiscale red blood cell model with accurate mechanics, rheology, and dynamics. , 2010, Biophysical journal.
[67] M. King,et al. Platelet adhesive dynamics. Part II: high shear-induced transient aggregation via GPIbalpha-vWF-GPIbalpha bridging. , 2008, Biophysical journal.
[68] K. Toth,et al. Plasma viscosity: a forgotten variable. , 2008, Clinical hemorheology and microcirculation.
[69] Michael F. P. O'Boyle,et al. A large-scale cross-architecture evaluation of thread-coarsening , 2013, 2013 SC - International Conference for High Performance Computing, Networking, Storage and Analysis (SC).
[70] Kurt Binder,et al. Calculation of local pressure tensors in systems with many-body interactions. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[71] Saroja Ramanujan,et al. Deformation of liquid capsules enclosed by elastic membranes in simple shear flow: large deformations and the effect of fluid viscosities , 1998, Journal of Fluid Mechanics.
[72] K. Kremer,et al. Dissipative particle dynamics: a useful thermostat for equilibrium and nonequilibrium molecular dynamics simulations. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[73] L. Reichl. A modern course in statistical physics , 1980 .
[74] Aidan P Thompson,et al. General formulation of pressure and stress tensor for arbitrary many-body interaction potentials under periodic boundary conditions. , 2009, The Journal of chemical physics.
[75] Hélène A. Simon,et al. A Numerical Investigation of Blood Damage in the Hinge Area of Aortic Bileaflet Mechanical Heart Valves During the Leakage Phase , 2012, Annals of Biomedical Engineering.
[76] J. Banavar,et al. Computer Simulation of Liquids , 1988 .
[77] Gerhard Gompper,et al. Predicting human blood viscosity in silico , 2011, Proceedings of the National Academy of Sciences.