Microparticle encoding technologies for high-throughput multiplexed suspension assays

Bead-based assays are a revolutionary new technology for the analysis of large numbers of biomolecules. We present a critical analysis of methods for encoding beads for use in assays.

[1]  P. Yager,et al.  Point-of-care diagnostics for global health. , 2008, Annual review of biomedical engineering.

[2]  R. G. Freeman,et al.  Submicrometer metallic barcodes. , 2001, Science.

[3]  M. Hogan,et al.  Simultaneous multianalyte ELISA performed on a microarray platform. , 2001, Clinical chemistry.

[4]  Masahiro Irie,et al.  Advances in Photochromic Materials for Optical Data Storage Media , 1989 .

[5]  Yasutaka Morita,et al.  Microfabrication of encoded microparticle array for multiplexed DNA hybridization detection. , 2005, Chemical communications.

[6]  M. Bruchez,et al.  Optical coding of mammalian cells using semiconductor quantum dots. , 2004, Analytical biochemistry.

[7]  Yasutaka Morita,et al.  Micromachining microcarrier-based biomolecular encoding for miniaturized and multiplexed immunoassay. , 2003, Analytical chemistry.

[8]  Marc Leblans,et al.  Layer-by-layer coated digitally encoded microcarriers for quantification of proteins in serum and plasma. , 2008, Analytical chemistry.

[9]  Radoje Drmanac,et al.  Multiplexed SNP genotyping using nanobarcode particle technology , 2006, Analytical and bioanalytical chemistry.

[10]  Kathryn L Kellar,et al.  Multiplexed microsphere-based flow cytometric immunoassays for human cytokines. , 2003, Journal of immunological methods.

[11]  S. Nie,et al.  Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules , 2001, Nature Biotechnology.

[12]  Dan Luo,et al.  Multiplexed detection of pathogen DNA with DNA-based fluorescence nanobarcodes , 2005, Nature Biotechnology.

[13]  Matt Clark A direct search method for the computer design of holograms , 1993 .

[14]  Hicham Fenniri,et al.  Self-encoded polymer beads for microarray technologies , 2007 .

[15]  Kevin Braeckmans,et al.  Encoding microcarriers: present and future technologies , 2002, Nature Reviews Drug Discovery.

[16]  Nathalie Wong,et al.  TOP2A overexpression in hepatocellular carcinoma correlates with early age onset, shorter patients survival and chemoresistance , 2009, International journal of cancer.

[17]  Chad A Mirkin,et al.  On-Wire Lithography , 2005, Science.

[18]  Ludwig Eichinger,et al.  Large scale multiplex PCR improves pathogen detection by DNA microarrays , 2009, BMC Microbiology.

[19]  Naoyuki Katayama,et al.  Gene expression profiling of peripheral T-cell lymphoma including gammadelta T-cell lymphoma. , 2009, Blood.

[20]  Nikolay I. Zheludev,et al.  Holographically encoded microparticles for bead-based assays , 2009 .

[21]  Christine D. Keating,et al.  Striped Metal Nanowires as Building Blocks and Optical Tags , 2003 .

[22]  Kevin Braeckmans,et al.  Multifunctional layer-by-layer coating of digitally encoded microparticles. , 2007, Langmuir : the ACS journal of surfaces and colloids.

[23]  Mehmet Toner,et al.  Multifunctional Encoded Particles for High-Throughput Biomolecule Analysis , 2007, Science.

[24]  Bin Wang,et al.  Longitudinal microarray analysis of cell surface antigens on peripheral blood mononuclear cells from HIV+ individuals on highly active antiretroviral therapy , 2008, Retrovirology.

[25]  Reinhard Niessner,et al.  Microarrays for the screening of allergen-specific IgE in human serum. , 2003, Analytical chemistry.

[26]  Erhard Klotz,et al.  Coherent Optical Generation and Inspection of Two-dimensional Periodic Structures , 1977 .

[27]  F. Li,et al.  Proteomics in nasopharyngeal carcinoma , 2008, Cellular and Molecular Life Sciences.

[28]  Hywel Morgan,et al.  Diffractive micro bar codes for encoding of biomolecules in multiplexed assays. , 2008, Analytical chemistry.

[29]  M R Feldman,et al.  Comparison of encoding methods for computer-generated diffractive optical elements. , 1997, Applied optics.

[30]  Andrew A Berlin,et al.  Composite organic-inorganic nanoparticles (COINs) with chemically encoded optical signatures. , 2005, Nano letters.

[31]  Zhongze Gu,et al.  Encoded Porous Beads for Label‐Free Multiplex Detection of Tumor Markers , 2009, Advanced materials.

[32]  Guillermo Izquierdo,et al.  Antigen microarrays identify unique serum autoantibody signatures in clinical and pathologic subtypes of multiple sclerosis , 2008, Proceedings of the National Academy of Sciences.

[33]  Jong-Keuk Lee,et al.  Genetic variants in the HLA-G region are associated with Kawasaki disease. , 2008, Human immunology.

[34]  C. Sewter,et al.  An encoded particle array tool for multiplex bioassays. , 2003, Assay and drug development technologies.

[35]  Igor L. Medintz,et al.  Quantum dot bioconjugates for imaging, labelling and sensing , 2005, Nature materials.

[36]  Joseph Irudayaraj,et al.  Multiplex biosensor using gold nanorods. , 2007, Analytical chemistry.

[37]  J. Landers,et al.  A simple, bead-based approach for multi-SNP molecular haplotyping. , 2005, Nucleic acids research.

[38]  Christopher R Lowe,et al.  Encoded and multiplexed surface plasmon resonance sensor platform. , 2008, Analytical chemistry.

[39]  Yuji Murakami,et al.  Multianalyte immunoassay with self-assembled addressable microparticle array on a chip. , 2003, Analytical biochemistry.

[40]  Hans W. Nijman,et al.  Prognostic significance of tumor-infiltrating T-lymphocytes in primary and metastatic lesions of advanced stage ovarian cancer , 2008, Cancer Immunology, Immunotherapy.

[41]  A. Agadir,et al.  Cytometric bead array: a multiplexed assay platform with applications in various areas of biology. , 2004, Clinical immunology.

[42]  Frances S Ligler,et al.  Perspective on optical biosensors and integrated sensor systems. , 2009, Analytical chemistry.

[43]  Michael J Sailor,et al.  Biomolecular screening with encoded porous-silicon photonic crystals , 2002, Nature Materials.

[44]  Qiang Ma,et al.  Multicolor quantum dot-encoded microspheres for the detection of biomolecules. , 2007, Talanta.

[45]  Des Brennan,et al.  Optically encoded silicon microbeads: Detection and characterisation in a microfluidic system , 2007 .

[46]  Kevin Braeckmans,et al.  Encoding microcarriers by spatial selective photobleaching , 2003, Nature materials.

[47]  Anthony G. Frutos,et al.  Rare earth-doped glass microbarcodes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[48]  Jennifer L. Osborn,et al.  Direct multiplexed measurement of gene expression with color-coded probe pairs , 2008, Nature Biotechnology.

[49]  Runsheng Chen,et al.  Antibody responses to individual proteins of SARS coronavirus and their neutralization activities , 2005, Microbes and Infection.

[50]  Nikolay I. Zheludev,et al.  Superimposed Nanostructured Diffraction Gratings as High Capacity Barcodes for Biological and Chemical Applications , 2008 .

[51]  D K Wood,et al.  A feasible approach to all-electronic digital labeling and readout for cell identification. , 2007, Lab on a chip.

[52]  Christine D. Keating,et al.  Electrochemical synthesis and optical readout of striped metal rods with submicron features , 2002 .

[53]  H. Fenniri,et al.  Preparation, physical properties, on-bead binding assay and spectroscopic reliability of 25 barcoded polystyrene-poly(ethylene glycol) graft copolymers. , 2003, Journal of the American Chemical Society.

[54]  Carole Foy,et al.  A comparability study of the emerging protein array platforms with established ELISA procedures. , 2005, Journal of immunological methods.

[55]  Yanhui Hu,et al.  Tracking humoral responses using self assembling protein microarrays , 2008, Proteomics. Clinical applications.

[56]  Nikolay I. Zheludev,et al.  Fabrication of diffraction-encoded micro-particles using nano-imprint lithography , 2007 .

[57]  Atsushi Okazaki,et al.  High-Angle Double-Crystal X-Ray Diffractometry (HADOX): Combination with a Sealed-Tube X-Ray Source , 1989 .

[58]  J. Jaiswal,et al.  Potentials and pitfalls of fluorescent quantum dots for biological imaging. , 2004, Trends in cell biology.

[59]  David G Spiller,et al.  Encoded microcarriers for high-throughput multiplexed detection. , 2006, Angewandte Chemie.

[60]  Hywel Morgan,et al.  Multistep synthesis on SU-8: combining microfabrication and solid-phase chemistry on a single material. , 2007, Journal of combinatorial chemistry.