A similarity distance of diversity measure for discriminating mesophilic and thermophilic proteins
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Wei Chen | Qian-Zhong Li | Wei Chen | Qian-zhong Li | Yongchun Zuo | Guo-Liang Fan | Guo-Liang Fan | Yong-Chun Zuo
[1] R. Laxton. The measure of diversity. , 1978, Journal of theoretical biology.
[2] Ming-Tat Ko,et al. Amino acid coupling patterns in thermophilic proteins , 2005, Proteins.
[3] Baishan Fang,et al. LogitBoost classifier for discriminating thermophilic and mesophilic proteins. , 2007, Journal of biotechnology.
[4] A. Karshikoff,et al. Proteins from thermophilic and mesophilic organisms essentially do not differ in packing. , 1998, Protein engineering.
[5] M. Gromiha,et al. Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins. , 1999, Biophysical chemistry.
[6] X.-X. Zhou,et al. Differences in amino acids composition and coupling patterns between mesophilic and thermophilic proteins , 2007, Amino Acids.
[7] Karen M Polizzi,et al. High-throughput screening for enhanced protein stability. , 2006, Current opinion in biotechnology.
[8] Kuo-Chen Chou,et al. Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types. , 2005, Biochemical and biophysical research communications.
[9] Qian-zhong Li,et al. Using reduced amino acid composition to predict defensin family and subfamily: Integrating similarity measure and structural alphabet , 2009, Peptides.
[10] K Watanabe,et al. Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[11] K. Chou,et al. EzyPred: a top-down approach for predicting enzyme functional classes and subclasses. , 2007, Biochemical and biophysical research communications.
[12] Jean-Michel Claverie,et al. Genomic Correlates of Hyperthermostability, an Update* , 2003, The Journal of Biological Chemistry.
[13] Kuo-Chen Chou,et al. Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition. , 2006, Journal of theoretical biology.
[14] Igor N. Berezovsky,et al. Protein and DNA Sequence Determinants of Thermophilic Adaptation , 2006, PLoS Comput. Biol..
[15] Wei Chen,et al. Prediction of thermophilic proteins using feature selection technique. , 2011, Journal of microbiological methods.
[16] Kuo-Chen Chou,et al. Ensemble classifier for protein fold pattern recognition , 2006, Bioinform..
[17] A. Szilágyi,et al. Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey. , 2000, Structure.
[18] R. Huber,et al. Towards the ecology of hyperthermophiles: biotopes, new isolation strategies and novel metabolic properties. , 2000, FEMS microbiology reviews.
[19] M Michael Gromiha,et al. Discrimination of mesophilic and thermophilic proteins using machine learning algorithms , 2007, Proteins.
[20] K. Chou,et al. Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. , 2007, Journal of proteome research.
[21] Baishan Fang,et al. Discrimination of thermophilic and mesophilic proteins via pattern recognition methods , 2006 .
[22] G. Olsen,et al. Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[23] M Michael Gromiha,et al. Motifs in outer membrane protein sequences: applications for discrimination. , 2005, Biophysical chemistry.
[24] Qianzhong Li,et al. Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components , 2007, J. Comput. Chem..
[25] C. Cambillau,et al. Structural and Genomic Correlates of Hyperthermostability* , 2000, The Journal of Biological Chemistry.
[26] A. Elcock. The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins. , 1998, Journal of molecular biology.
[27] Kuo-Chen Chou,et al. Using supervised fuzzy clustering to predict protein structural classes. , 2005, Biochemical and biophysical research communications.
[28] M. Bonato,et al. Preferred amino acids and thermostability. , 2003, Genetics and molecular research : GMR.
[29] M. Gerstein,et al. The stability of thermophilic proteins: a study based on comprehensive genome comparison , 2000, Functional & Integrative Genomics.
[30] Sang Joon Kim,et al. A Mathematical Theory of Communication , 2006 .
[31] Qian-zhong Li,et al. Using K-minimum increment of diversity to predict secretory proteins of malaria parasite based on groupings of amino acids , 2010, Amino Acids.
[32] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[33] Piero Fariselli,et al. Predicting protein thermostability changes from sequence upon multiple mutations , 2008, ISMB.
[34] T M Handel,et al. Review: protein design--where we were, where we are, where we're going. , 2001, Journal of structural biology.
[35] Q. Z. Li,et al. The prediction of the structural class of protein: application of the measure of diversity. , 2001, Journal of theoretical biology.
[36] Kuo-Chen Chou,et al. Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers. , 2006, Journal of proteome research.
[37] Kuo-Chen Chou,et al. Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern. , 2008, Journal of theoretical biology.
[38] W. F. Li,et al. Structural features of thermozymes. , 2005, Biotechnology advances.
[39] Baishan Fang,et al. Application of amino acid distribution along the sequence for discriminating mesophilic and thermophilic proteins , 2006 .
[40] C. Vieille,et al. Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase. , 2001, European journal of biochemistry.
[41] Jingbo Xia,et al. Prediction of thermophilic protein with pseudo amino Acid composition: an approach from combined feature selection and reduction. , 2011, Protein and peptide letters.
[42] K. Chou,et al. Recent progress in protein subcellular location prediction. , 2007, Analytical biochemistry.
[43] F.-M. Li,et al. Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach , 2007, Amino Acids.
[44] Jianwen Fang,et al. Distance-dependent statistical potentials for discriminating thermophilic and mesophilic proteins. , 2010, Biochemical and biophysical research communications.
[45] C. Vieille,et al. Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability , 2001, Microbiology and Molecular Biology Reviews.
[46] K. Chou,et al. Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. , 2007, Protein engineering, design & selection : PEDS.
[47] M. Perutz,et al. Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2 , 1975, Nature.
[48] M. Sadeghi,et al. Effective factors in thermostability of thermophilic proteins. , 2006, Biophysical chemistry.
[49] R. Nussinov,et al. Factors enhancing protein thermostability. , 2000, Protein engineering.
[50] D Eisenberg,et al. Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability. , 1999, Journal of molecular biology.
[51] K. Nishikawa,et al. Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria. , 2001, Journal of molecular biology.
[52] Kuo-Chen Chou,et al. Large‐scale plant protein subcellular location prediction , 2007, Journal of cellular biochemistry.
[53] Songyot Nakariyakul,et al. Detecting thermophilic proteins through selecting amino acid and dipeptide composition features , 2011, Amino Acids.
[54] K. Chou. A novel approach to predicting protein structural classes in a (20–1)‐D amino acid composition space , 1995, Proteins.
[55] R. Radi,et al. Protein tyrosine nitration in hydrophilic and hydrophobic environments , 2006, Amino Acids.
[56] Qian-zhong Li,et al. Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility. , 2011, Genomics.
[57] R. Levy,et al. Simplified amino acid alphabets for protein fold recognition and implications for folding. , 2000, Protein engineering.
[58] A. Hermetter,et al. Activity-based proteomics: enzymatic activity profiling in complex proteomes , 2006, Amino Acids.