The genetic landscape of a physical interaction
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[1] S. Fields,et al. Deep mutational scanning: a new style of protein science , 2014, Nature Methods.
[2] J. Shendure,et al. The origins, determinants, and consequences of human mutations , 2015, Science.
[3] Jay Shendure,et al. Parallel, tag-directed assembly of locally derived short sequence reads , 2010, Nature Methods.
[4] M. Laub,et al. Evolving New Protein-Protein Interaction Specificity through Promiscuous Intermediates , 2015, Cell.
[5] Francisco Torres-Quiroz,et al. Integrative avenues for exploring the dynamics and evolution of protein interaction networks. , 2013, Current opinion in biotechnology.
[6] H. Kacser,et al. The control of flux. , 1995, Biochemical Society transactions.
[7] C. Myers,et al. Genetic interaction networks: toward an understanding of heritability. , 2013, Annual review of genomics and human genetics.
[8] J. N. Mark Glover,et al. Crystal structure of the heterodimeric bZIP transcription factor c-Fos–c-Jun bound to DNA , 1995, Nature.
[9] Peer Bork,et al. SMART: recent updates, new developments and status in 2020 , 2020, Nucleic Acids Res..
[10] Gary D Bader,et al. Global Mapping of the Yeast Genetic Interaction Network , 2004, Science.
[11] Isabelle Gagnon-Arsenault,et al. Gene duplication can impart fragility, not robustness, in the yeast protein interaction network , 2017, Science.
[12] R. Ranganathan,et al. Evolvability as a Function of Purifying Selection in TEM-1 b-Lactamase Graphical Abstract Highlights , 2015 .
[13] A. Horovitz,et al. Double-mutant cycles: a powerful tool for analyzing protein structure and function. , 1996, Folding & design.
[14] Adam P. Rosebrock,et al. A global genetic interaction network maps a wiring diagram of cellular function , 2016, Science.
[15] Peer Bork,et al. SMART: recent updates, new developments and status in 2015 , 2014, Nucleic Acids Res..
[16] Ben Lehner,et al. Molecular mechanisms of epistasis within and between genes. , 2011, Trends in genetics : TIG.
[17] Najeeb M. Halabi,et al. Protein Sectors: Evolutionary Units of Three-Dimensional Structure , 2009, Cell.
[18] Mark A. Schmitz,et al. Semirational design of Jun-Fos coiled coils with increased affinity: Universal implications for leucine zipper prediction and design. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[19] Robert P. St.Onge,et al. Multiplex assay for condition-dependent changes in protein–protein interactions , 2012, Proceedings of the National Academy of Sciences.
[20] Stanley Fields,et al. Measuring the activity of protein variants on a large scale using deep mutational scanning , 2014, Nature Protocols.
[21] David L. Young,et al. Deep mutational scanning of an RRM domain of the Saccharomyces cerevisiae poly(A)-binding protein , 2013, RNA.
[22] Dan S. Tawfik,et al. Robustness–epistasis link shapes the fitness landscape of a randomly drifting protein , 2006, Nature.
[23] Dan S. Tawfik,et al. Stability effects of mutations and protein evolvability. , 2009, Current opinion in structural biology.
[24] Michael Knop,et al. A versatile toolbox for PCR‐based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes , 2004, Yeast.
[25] J. Visvader,et al. Fos-Jun interaction: mutational analysis of the leucine zipper domain of both proteins. , 1989, Genes & development.
[26] Gary D Bader,et al. The Genetic Landscape of a Cell , 2010, Science.
[27] M. Karin,et al. AP-1 as a regulator of cell life and death , 2002, Nature Cell Biology.
[28] E. Plahte,et al. Gene regulatory networks generating the phenomena of additivity, dominance and epistasis. , 2000, Genetics.
[29] S. Fields,et al. A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function , 2012, Proceedings of the National Academy of Sciences.
[30] S. Michnick,et al. High-resolution mapping of protein concentration reveals principles of proteome architecture and adaptation. , 2014, Cell reports.
[31] D. Baker,et al. High Resolution Mapping of Protein Sequence–Function Relationships , 2010, Nature Methods.
[32] Jiajie Zhang,et al. PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..
[33] Minoru Kanehisa,et al. AAindex: amino acid index database, progress report 2008 , 2007, Nucleic Acids Res..
[34] R. Ranganathan,et al. Evolvability as a Function of Purifying Selection in TEM-1 β-Lactamase , 2015, Cell.
[35] R. Ranganathan,et al. Origins of Allostery and Evolvability in Proteins: A Case Study , 2016, Cell.
[36] Gavin Sherlock,et al. Quantitative evolutionary dynamics using high-resolution lineage tracking , 2015, Nature.
[37] P. Phillips. Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems , 2008, Nature Reviews Genetics.
[38] Stig W Omholt,et al. Statistical Epistasis Is a Generic Feature of Gene Regulatory Networks , 2007, Genetics.
[39] T. Curran,et al. Altered protein conformation on DNA binding by Fos and Jun , 1990, Nature.
[40] T. Kerppola,et al. Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity , 2001, Oncogene.
[41] K. Thompson,et al. Thermodynamic characterization of the structural stability of the coiled-coil region of the bZIP transcription factor GCN4. , 1993, Biochemistry.
[42] Nicholas C. Wu,et al. A Comprehensive Biophysical Description of Pairwise Epistasis throughout an Entire Protein Domain , 2014, Current Biology.
[43] C. Landry,et al. qPCA: a scalable assay to measure the perturbation of protein-protein interactions in living cells. , 2013, Molecular bioSystems.
[44] C. Landry,et al. An in Vivo Map of the Yeast Protein Interactome , 2008, Science.