Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
暂无分享,去创建一个
[1] Monzoorul Haque Mohammed,et al. Classification of metagenomic sequences: methods and challenges , 2012, Briefings Bioinform..
[2] Bud Mishra,et al. Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons , 2012, PloS one.
[3] Brian C. Thomas,et al. Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla , 2012, Science.
[4] R. Lasken. Genomic sequencing of uncultured microorganisms from single cells , 2012, Nature Reviews Microbiology.
[5] Edward C. Uberbacher,et al. Gene and translation initiation site prediction in metagenomic sequences , 2012, Bioinform..
[6] Aaron Marc Saunders,et al. Microbial communities involved in enhanced biological phosphorus removal from wastewater--a model system in environmental biotechnology. , 2012, Current opinion in biotechnology.
[7] Elmar Pruesse,et al. SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes , 2012, Bioinform..
[8] D. Missiakas,et al. Protein secretion and surface display in Gram-positive bacteria , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.
[9] N. Kyrpides,et al. Individual genome assembly from complex community short-read metagenomic datasets , 2011, The ISME Journal.
[10] Ruben E. Valas,et al. Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage , 2011, The ISME Journal.
[11] Eric P. Nawrocki,et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea , 2011, The ISME Journal.
[12] N. Moran,et al. Extreme genome reduction in symbiotic bacteria , 2011, Nature Reviews Microbiology.
[13] Daniel G. Brown,et al. PANDAseq: paired-end assembler for illumina sequences , 2012, BMC Bioinformatics.
[14] M. Wagner,et al. Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification , 2011, Applied and Environmental Microbiology.
[15] S. Schuster,et al. Integrative analysis of environmental sequences using MEGAN4. , 2011, Genome research.
[16] Radhey S. Gupta. Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes , 2011, Antonie van Leeuwenhoek.
[17] Richard A. Flavell,et al. NLRP6 Inflammasome Regulates Colonic Microbial Ecology and Risk for Colitis , 2011, Cell.
[18] Harald Meier,et al. 46. ARB: A Software Environment for Sequence Data , 2011 .
[19] Peer Bork,et al. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy , 2011, Nucleic Acids Res..
[20] I. Sutcliffe. Cell envelope architecture in the Chloroflexi: a shifting frontline in a phylogenetic turf war. , 2011, Environmental microbiology.
[21] S. Tringe,et al. Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen , 2011, Science.
[22] Trey Ideker,et al. Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..
[23] Damian Szklarczyk,et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored , 2010, Nucleic Acids Res..
[24] J. Einasto. Dark Matter , 2011, Brazilian Journal of Physics.
[25] Iain C Sutcliffe,et al. A phylum level perspective on bacterial cell envelope architecture. , 2010, Trends in microbiology.
[26] Robert C. Edgar,et al. BIOINFORMATICS APPLICATIONS NOTE , 2001 .
[27] Aaron Marc Saunders,et al. A conceptual ecosystem model of microbial communities in enhanced biological phosphorus removal plants. , 2010, Water research.
[28] William A. Walters,et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample , 2010, Proceedings of the National Academy of Sciences.
[29] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[30] Doug Hyatt,et al. Enigmatic, ultrasmall, uncultivated Archaea , 2010, Proceedings of the National Academy of Sciences.
[31] Paramvir S. Dehal,et al. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.
[32] Natalia N. Ivanova,et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.
[33] K. Knittel,et al. Anaerobic oxidation of methane: progress with an unknown process. , 2009, Annual review of microbiology.
[34] Sallie W. Chisholm,et al. Whole Genome Amplification and De novo Assembly of Single Bacterial Cells , 2009, PloS one.
[35] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[36] I-Min A. Chen,et al. IMG ER: a system for microbial genome annotation expert review and curation , 2009, Bioinform..
[37] Alison M. Cupples,et al. Identification of a Novel Toluene-Degrading Bacterium from the Candidate Phylum TM7, as Determined by DNA Stable Isotope Probing , 2009, Applied and Environmental Microbiology.
[38] S. Hedges,et al. A major clade of prokaryotes with ancient adaptations to life on land. , 2009, Molecular biology and evolution.
[39] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[40] P. Lepage,et al. Intestinal TM7 bacterial phylogenies in active inflammatory bowel disease. , 2008, Journal of medical microbiology.
[41] Alla Lapidus,et al. A Bioinformatician's Guide to Metagenomics , 2008, Microbiology and Molecular Biology Reviews.
[42] M. Wagner,et al. Microbial diversity and the genetic nature of microbial species , 2008, Nature Reviews Microbiology.
[43] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[44] C. Weidenmaier,et al. Teichoic acids and related cell-wall glycopolymers in Gram-positive physiology and host interactions , 2008, Nature Reviews Microbiology.
[45] Anjali Mandlik,et al. Pili in Gram-positive bacteria: assembly, involvement in colonization and biofilm development. , 2008, Trends in microbiology.
[46] Rick L. Stevens,et al. The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.
[47] W. Ludwig,et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.
[48] S. Quake,et al. Dissecting biological “dark matter” with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth , 2007, Proceedings of the National Academy of Sciences.
[49] Karsten Zengler,et al. Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities , 2007, Applied and Environmental Microbiology.
[50] Marcy Yann,et al. ヒト口腔からの微量の培養されないTM7微生物の単一細胞遺伝分析による生物学的「不明な物体」の詳細な分析 , 2007 .
[51] Natalia Ivanova,et al. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities , 2006, Nature Biotechnology.
[52] S. Tringe,et al. Comparative Metagenomics of Microbial Communities , 2004, Science.
[53] K. Schleifer,et al. ARB: a software environment for sequence data. , 2004, Nucleic acids research.
[54] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[55] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[56] D. Relman,et al. Prevalence of Bacteria of Division TM7 in Human Subgingival Plaque and Their Association with Disease , 2003, Applied and Environmental Microbiology.
[57] P. Hugenholtz,et al. In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth. , 2002, Environmental microbiology.
[58] P. Hugenholtz. Exploring prokaryotic diversity in the genomic era , 2002, Genome Biology.
[59] P. Hugenholtz,et al. Investigation of Candidate Division TM7, a Recently Recognized Major Lineage of the Domain Bacteria with No Known Pure-Culture Representatives , 2001, Applied and Environmental Microbiology.
[60] Wei Qian,et al. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.
[61] E. Hoiczyk,et al. Cyanobacterial Cell Walls: News from an Unusual Prokaryotic Envelope , 2000, Journal of bacteriology.