Automatic Lane Detection in Chromatography Images

This paper proposes a method for automating the detection of lanes in Thin-Layer Chromatography images. Our approach includes a preprocessing step to detect the image region of interest, followed by background estimation and removal. This image is then projected onto the horizontal direction to integrate the information into a one-dimensional profile. A smoothing filter is applied to this profile and the outcome is the input of the lane detection process, which is performed in three phases. The first one aims at obtaining an initial set of candidate lanes that are further validated or removed in the second phase. The last phase is a refinement step that allows the inclusion of lanes that are not clearly distinguishable in the profile and that were not included in the initial set. The method was evaluated in 66 chromatography images and achieved values of recall, precision and Fβ-measure of 97.0%, 99.4% and 98.2%, respectively.

[1]  Ana Maria Mendonça,et al.  Classification-Based Segmentation of the Region of Interest in Chromatographic Images , 2011, ICIAR.

[2]  D. Maixnerova,et al.  A nationwide blood spot screening study for Fabry disease in the Czech Republic haemodialysis patient population. , 2006, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[3]  Ivan Bajla,et al.  An alternative method for electrophoretic gel image analysis in the GelMaster software , 2005, Comput. Methods Programs Biomed..

[4]  William H. Press,et al.  Book-Review - Numerical Recipes in Pascal - the Art of Scientific Computing , 1989 .

[5]  Pierre Soille,et al.  Morphological Image Analysis: Principles and Applications , 2003 .

[6]  Rui L. Aguiar,et al.  Automatic Lane and Band Detection in Images of Thin Layer Chromatography , 2004, ICIAR.

[7]  Miguel Angel Sotaquira Gutierrez On the Use of Distance Maps in the Analysis of 1D DNA Gel Images , 2009 .

[8]  Ana Maria Mendonça,et al.  Automatic segmentation of chromatographic images for region of interest delineation , 2011, Medical Imaging.

[9]  J. G. Kirchner,et al.  Thin Layer Chromatography , 1963 .

[10]  Max M. Houck,et al.  Fundamentals of Forensic Science , 2006 .

[11]  Fritz Albregtsen,et al.  Automatic lane detection and separation in one dimensional gel images using continuous wavelet transform , 2010 .

[12]  A.M. Siqueira,et al.  An iterative algorithm for segmenting lanes in gel electrophoresis images , 1997, Proceedings X Brazilian Symposium on Computer Graphics and Image Processing.

[13]  Mohamed S. Kamel,et al.  Image Analysis and Recognition , 2014, Lecture Notes in Computer Science.

[14]  Chih-Yang Lin,et al.  Automatic Method to Compare the Lanes in Gel Electrophoresis Images , 2007, IEEE Transactions on Information Technology in Biomedicine.

[15]  Junbin Gao,et al.  Chemometrics: From Basics to Wavelet Transform , 2004 .

[16]  R. Brady,et al.  Neurophysiological, behavioral and morphological abnormalities in the Fabry knockout mice , 2009, Neurobiology of Disease.

[17]  William H. Press,et al.  The Art of Scientific Computing Second Edition , 1998 .