Atomic Structure of Human Adenovirus by Cryo-EM Reveals Interactions Among Protein Networks

Human Adenovirus Structures Human adenoviruses may be a common cause of acute infections in humans, but they can also be used as vectors for vaccine and therapeutic gene transfer. Rational engineering of safe adenovirus vectors has been hampered by a lack of high-resolution structural information. Two papers now describe the structure of human adenovirus using complementary techniques. Reddy et al. (p. 1071; see the Perspective by Harrison) have determined the crystal structure at 3.5 angstrom resolution, while Liu et al. (p. 1038; see the Perspective by Harrison) solved the structure to 3.6 angstrom resolution by electron microscopy. Together the structures provide insights into viral assembly, stabilization, and cell entry mechanisms. High-resolution structures provide a basis for optimizing adenovirus as a vaccine and gene-therapy vector. Construction of a complex virus may involve a hierarchy of assembly elements. Here, we report the structure of the whole human adenovirus virion at 3.6 angstroms resolution by cryo–electron microscopy (cryo-EM), revealing in situ atomic models of three minor capsid proteins (IIIa, VIII, and IX), extensions of the (penton base and hexon) major capsid proteins, and interactions within three protein-protein networks. One network is mediated by protein IIIa at the vertices, within group-of-six (GOS) tiles—a penton base and its five surrounding hexons. Another is mediated by ropes (protein IX) that lash hexons together to form group-of-nine (GON) tiles and bind GONs to GONs. The third, mediated by IIIa and VIII, binds each GOS to five surrounding GONs. Optimization of adenovirus for cancer and gene therapy could target these networks.

[1]  Zhen Gu,et al.  A novel intracellular protein delivery platform based on single-protein nanocapsules. , 2010, Nature nanotechnology.

[2]  Hildegund C.J. Ertl,et al.  Adenoviruses as vaccine vectors , 2004, Molecular Therapy.

[3]  D. Stuart,et al.  Insights into assembly from structural analysis of bacteriophage PRD1 , 2004, Nature.

[4]  G. Schoehn,et al.  The C-Terminal Domains of Adenovirus Serotype 5 Protein IX Assemble into an Antiparallel Structure on the Facets of the Capsid , 2008, Journal of Virology.

[5]  Roberto Marabini,et al.  Structure and uncoating of immature adenovirus. , 2009, Journal of molecular biology.

[6]  Yuyao Liang,et al.  IMIRS: a high-resolution 3D reconstruction package integrated with a relational image database. , 2002, Journal of structural biology.

[7]  G. Nemerow,et al.  Adenovirus Protein VI Mediates Membrane Disruption following Capsid Disassembly , 2005, Journal of Virology.

[8]  L. Philipson,et al.  Structural proteins of adenoviruses. XII. Location and neighbor relationship among proteins of adenovirion type 2 as revealed by enzymatic iodination, immunoprecipitation and chemical cross-linking. , 1975, Virology.

[9]  P. Hearing,et al.  Control of adenovirus packaging , 2005, Journal of cellular biochemistry.

[10]  R. Sweet,et al.  Crystallographic structure at 1.6-A resolution of the human adenovirus proteinase in a covalent complex with its 11-amino-acid peptide cofactor: insights on a new fold. , 2003, Biochimica et biophysica acta.

[11]  Glen R. Nemerow,et al.  Visualization of α-Helices in a 6-Ångstrom Resolution Cryoelectron Microscopy Structure of Adenovirus Allows Refinement of Capsid Protein Assignments , 2006, Journal of Virology.

[12]  D. Curiel,et al.  Transductional targeting of adenoviral cancer gene therapy. , 2004, Current gene therapy.

[13]  Roger M. Burnett,et al.  Image reconstruction reveals the complex molecular organization of adenovirus , 1991, Cell.

[14]  H. Pereira,et al.  Isolation of an internal component from adenovirus type 5. , 1968, Journal of molecular biology.

[15]  P. Stewart,et al.  Difference imaging of adenovirus: bridging the resolution gap between X‐ray crystallography and electron microscopy. , 1993, The EMBO journal.

[16]  P. Ng,et al.  Development of a size-restricted pIX-deleted helper virus for amplification of helper-dependent adenovirus vectors , 2004, Gene Therapy.

[17]  W. Russell,et al.  Adenoviruses: update on structure and function. , 2009, The Journal of general virology.

[18]  L. Philipson,et al.  Structural proteins of adenoviruses. 8. Characterization of incomplete particles of adenovirus type 3. , 1972, Virology.

[19]  K. Mansfield,et al.  Hexon-chimaeric adenovirus serotype 5 vectors circumvent pre-existing anti-vector immunity , 2006, Nature.

[20]  M. Trousdale,et al.  Architecture of the Adenovirus Capsid , 1965, Journal of bacteriology.

[21]  C. Napoli,et al.  Adenovirus Serotype 5 Hexon Mediates Liver Gene Transfer , 2008, Cell.

[22]  R. M. Burnett,et al.  Structural and Phylogenetic Analysis of Adenovirus Hexons by Use of High-Resolution X-Ray Crystallographic, Molecular Modeling, and Sequence-Based Methods , 2003, Journal of Virology.

[23]  R. Crowther,et al.  The structure of the groups of nine hexons from adenovirus. , 1972, Journal of molecular biology.

[24]  P. Boulanger,et al.  Human adenovirus type 2 protein IIIa. II. Maturation and encapsidation. , 1980, Virology.

[25]  Matthew L. Baker,et al.  Cryoelectron Microscopy of Protein IX-Modified Adenoviruses Suggests a New Position for the C Terminus of Protein IX , 2006, Journal of Virology.

[26]  J. King,et al.  Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus , 2006, Nature.

[27]  D. Stuart,et al.  Membrane structure and interactions with protein and DNA in bacteriophage PRD1 , 2004, Nature.

[28]  Z. Zhou,et al.  Direct Visualization of the Putative Portal in the Kaposi's Sarcoma-Associated Herpesvirus Capsid by Cryoelectron Tomography , 2007, Journal of Virology.

[29]  R. M. Burnett,et al.  The structure of the adenovirus capsid. II. The packing symmetry of hexon and its implications for viral architecture. , 1985, Journal of molecular biology.

[30]  W. Hancock,et al.  Reversed-phase high-performance liquid chromatographic assay for the adenovirus type 5 proteome. , 1999, Journal of chromatography. B, Biomedical sciences and applications.

[31]  T. Shenk,et al.  Adenovirus type 5 virions can be assembled in vivo in the absence of detectable polypeptide IX , 1981, Journal of virology.

[32]  S. Cusack,et al.  A quasi‐atomic model of human adenovirus type 5 capsid , 2005, The EMBO journal.

[33]  R. M. Burnett,et al.  Three-dimensional structure of the adenovirus major coat protein hexon. , 1986, Science.

[34]  Steffen Lindert,et al.  Cryo-Electron Microscopy Structure of Adenovirus Type 2 Temperature-Sensitive Mutant 1 Reveals Insight into the Cell Entry Defect , 2009, Journal of Virology.

[35]  R. Parks,et al.  DNA Genome Size Affects the Stability of the Adenovirus Virion , 2008, Journal of Virology.

[36]  Guy Schoehn,et al.  The structure of the human adenovirus 2 penton. , 2005, Molecular cell.

[37]  Anna Mitraki,et al.  A triple β-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein , 1999, Nature.

[38]  D. Matthews,et al.  Adenovirus core protein V is delivered by the invading virus to the nucleus of the infected cell and later in infection is associated with nucleoli. , 1998, The Journal of general virology.

[39]  R. Henderson,et al.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. , 2003, Journal of molecular biology.