Efficient algorithms for calculating small-angle scattering from large model structures

This paper compares Monte Carlo approaches and fast Fourier transform (FFT) methods to efficiently calculate small-angle scattering (SAS) profiles from large morphological models. These methods enable calculation of SAS from complex nanoscale morphologies commonly encountered in modern polymeric and nanoparticle-based systems which have no exact analytical representation and are instead represented digitally using many millions of subunits, so that algorithms with linear or near-linear scaling are essential. The Monte Carlo method, referred to as the Monte Carlo distribution function method (MC-DFM), is presented and its accuracy validated using a number of simple morphologies, while the FFT calculations are based on the fastest implementations available. The efficiency, usefulness and inherent limits of DFM and FFT approaches are explored using a series of complex morphological models, including Gaussian chain ensembles and two-phase three-dimensional interpenetrating nanostructures.

[1]  Elina Tjioe,et al.  ORNL_SAS: software for calculation of small-angle scattering intensities of proteins and protein complexes , 2007 .

[2]  G. Gebel,et al.  Small-Angle Scattering Study of Water-Swollen Perfluorinated Ionomer Membranes , 1997 .

[3]  Julia S. Higgins,et al.  Polymers and Neutron Scattering , 1997 .

[4]  Kell Mortensen,et al.  Analytical treatment of the resolution function for small-angle scattering , 1990 .

[5]  X. Zuo,et al.  X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis , 2009, Photosynthesis Research.

[6]  Itaru Honma,et al.  Ultrathin nanosheets of Li2MSiO4 (M = Fe, Mn) as high-capacity Li-ion battery electrode. , 2012, Nano letters.

[7]  Ronald L. Jones,et al.  Chain Conformation in Ultrathin Polymer Films Using Small-Angle Neutron Scattering , 2001 .

[8]  S. Henderson Monte Carlo modeling of small-angle scattering data from non-interacting homogeneous and heterogeneous particles in solution. , 1996, Biophysical journal.

[9]  K. Schmidt-Rohr Simulation of small-angle scattering curves by numerical Fourier transformation , 2007 .

[10]  Yoshinori Nishino,et al.  Advances in X-ray scattering: from solution SAXS to achievements with coherent beams. , 2012, Current opinion in structural biology.

[11]  P. Levitz,et al.  Small-angle scattering of dense, polydisperse granular porous media: computation free of size effects. , 2013, Physical review. E, Statistical, nonlinear, and soft matter physics.

[12]  RMCSANS--modelling the inter-particle term of small angle scattering data via the reverse Monte Carlo method. , 2010, Journal of physics. Condensed matter : an Institute of Physics journal.

[13]  S. Hansen Monte Carlo estimation of the structure factor for hard bodies in small-angle scattering , 2012 .

[14]  A. Nelson Elementary Scattering Theory for X-ray and Neutron Users , 2012 .

[15]  W. T. Heller ELLSTAT: shape modeling for solution small-angle scattering of proteins and protein complexes with automated statistical characterization , 2006 .

[16]  A. J. Goshe,et al.  Solution-phase structural characterization of supramolecular assemblies by molecular diffraction. , 2007, Journal of the American Chemical Society.

[17]  K Schulten,et al.  VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.

[18]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[19]  C. Batt,et al.  Effect of Nanoparticle Mobility on Toughness of Polymer Nanocomposites , 2005 .

[20]  D. Schlettwein,et al.  Structure and morphology in thin films of perfluorinated copper phthalocyanine grown on alkali halide surfaces (001) , 2012 .

[21]  Stephen R. Forrest,et al.  Efficient bulk heterojunction photovoltaic cells using small-molecular-weight organic thin films , 2003, Nature.

[22]  W. Su,et al.  Quantitative nanoorganized structural evolution for a high efficiency bulk heterojunction polymer solar cell. , 2011, Journal of the American Chemical Society.

[23]  E. Corwin,et al.  Mean-field granocentric approach in 2D & 3D polydisperse, frictionless packings , 2013, 1302.2511.

[24]  Steven R. Kline,et al.  Reduction and analysis of SANS and USANS data using IGOR Pro , 2006 .

[25]  Ramani Duraiswami,et al.  A hierarchical algorithm for fast debye summation with applications to small angle scattering , 2012, J. Comput. Chem..

[26]  Maxim V. Petoukhov,et al.  New developments in the ATSAS program package for small-angle scattering data analysis , 2012, Journal of applied crystallography.

[27]  P. Duxbury,et al.  Percolating bulk heterostructures from neutron reflectometry and small-angle scattering data. , 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

[28]  S. Hansen Calculation of small-angle scattering profiles using Monte Carlo simulation , 1990 .

[29]  O. Terasaki,et al.  Shape- and size-controlled synthesis in hard templates: sophisticated chemical reduction for mesoporous monocrystalline platinum nanoparticles. , 2011, Journal of the American Chemical Society.

[30]  Simulation of small-angle scattering from large assemblies of multi-type scatterer particles , 1996 .

[31]  Christoph J. Brabec,et al.  Interface modification for highly efficient organic photovoltaics , 2008 .

[32]  Pete R. Jemian,et al.  Irena: tool suite for modeling and analysis of small‐angle scattering , 2009 .